Wall clock time and date at job start Thu Apr 9 2020 14:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47303 * 338.49533 * 3 2 1 5 5 C 1.37112 * 119.99907 * 81.84175 * 4 3 2 6 6 H 1.08000 * 120.00250 * 168.84951 * 5 4 3 7 7 C 1.38933 * 120.00398 * 348.84289 * 5 4 3 8 8 N 1.31440 * 119.99390 * 0.40418 * 7 5 4 9 9 Si 1.86798 * 120.00253 * 180.39884 * 7 5 4 10 10 H 1.48498 * 109.47014 * 60.00251 * 9 7 5 11 11 H 1.48498 * 109.47075 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47025 * 300.00156 * 9 7 5 13 13 C 1.34775 * 119.99736 * 261.83765 * 4 3 2 14 14 O 1.21500 * 119.99836 * 186.08846 * 13 4 3 15 15 N 1.34770 * 120.00086 * 6.08150 * 13 4 3 16 16 C 1.37480 * 126.53681 * 25.98097 * 15 13 4 17 17 C 1.34486 * 106.80233 * 179.97438 * 16 15 13 18 18 N 1.34250 * 108.30801 * 359.97438 * 17 16 15 19 19 C 1.30354 * 109.45686 * 359.97438 * 18 17 16 20 20 H 4.40644 * 5.51392 * 179.97438 * 4 1 2 21 21 H 1.09000 * 109.47018 * 218.48982 * 3 2 1 22 22 H 1.08999 * 109.46964 * 98.49523 * 3 2 1 23 23 H 0.97001 * 119.99482 * 179.97438 * 8 7 5 24 24 H 1.07999 * 126.59923 * 0.21846 * 16 15 13 25 25 H 1.08000 * 125.84013 * 179.97438 * 17 16 15 26 26 H 1.08000 * 125.74417 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.2842 0.5063 5 6 3.2051 -2.3686 -0.3298 6 1 3.7280 -3.2598 -0.0156 7 6 2.6034 -2.3212 -1.5811 8 7 1.9736 -1.2338 -1.9666 9 14 2.6894 -3.8027 -2.7157 10 1 2.0517 -4.9698 -2.0551 11 1 1.9753 -3.4987 -3.9817 12 1 4.1101 -4.1170 -3.0125 13 6 3.5159 -1.4001 1.7939 14 8 4.0242 -2.4315 2.1865 15 7 3.3330 -0.3721 2.6459 16 6 2.3826 0.6160 2.5443 17 6 2.5556 1.4318 3.5994 18 7 3.5794 0.9639 4.3309 19 6 4.0539 -0.1148 3.7737 20 1 -1.0498 -0.0003 0.0003 21 1 3.0089 0.8052 0.6396 22 1 3.0092 0.1526 -1.0164 23 1 1.5538 -1.2005 -2.8404 24 1 1.6375 0.7155 1.7688 25 1 1.9709 2.3126 3.8203 26 1 4.8800 -0.7045 4.1426 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300912782.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:13:38 Heat of formation + Delta-G solvation = 117.474141 kcal Electronic energy + Delta-G solvation = -14642.684337 eV Core-core repulsion = 12111.914762 eV Total energy + Delta-G solvation = -2530.769575 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 219.075 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.64044 -40.38254 -37.71780 -34.72802 -33.65015 -33.26953 -30.46519 -28.53466 -27.11977 -24.18290 -22.46068 -21.61666 -20.01497 -19.14374 -18.53453 -17.60950 -16.90924 -16.26169 -15.84713 -15.59236 -15.30279 -14.88215 -14.45077 -14.33408 -13.72693 -13.15343 -12.94088 -12.65669 -12.18600 -11.66006 -11.54092 -11.24748 -11.14653 -10.98248 -10.67691 -10.19028 -9.58295 -8.39147 -6.13831 0.41891 1.31512 1.41408 1.45669 1.59432 1.90617 2.07910 2.11456 2.22804 2.33584 2.94726 3.22660 3.69597 3.78266 4.07839 4.32855 4.47734 4.56958 4.88175 5.02555 5.29095 5.32952 5.55517 5.76920 6.10557 6.20176 6.81758 6.85396 7.02428 7.13465 7.56846 8.48156 Molecular weight = 219.07amu Principal moments of inertia in cm(-1) A = 0.040536 B = 0.010774 C = 0.008895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.573524 B = 2598.117929 C = 3147.131322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.147 4.147 3 C 0.219 3.781 4 N -0.427 5.427 5 C -0.342 4.342 6 H 0.090 0.910 7 C 0.007 3.993 8 N -0.868 5.868 9 Si 1.003 2.997 10 H -0.276 1.276 11 H -0.267 1.267 12 H -0.267 1.267 13 C 0.614 3.386 14 O -0.617 6.617 15 N -0.446 5.446 16 C -0.077 4.077 17 C -0.022 4.022 18 N -0.500 5.500 19 C 0.209 3.791 20 H 0.238 0.762 21 H 0.086 0.914 22 H 0.118 0.882 23 H 0.279 0.721 24 H 0.193 0.807 25 H 0.209 0.791 26 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.433 5.137 0.603 5.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.149 4.149 3 C 0.097 3.903 4 N -0.144 5.144 5 C -0.469 4.469 6 H 0.108 0.892 7 C -0.196 4.196 8 N -0.504 5.504 9 Si 0.826 3.174 10 H -0.202 1.202 11 H -0.191 1.191 12 H -0.192 1.192 13 C 0.318 3.682 14 O -0.499 6.499 15 N -0.147 5.147 16 C -0.204 4.204 17 C -0.167 4.167 18 N -0.218 5.218 19 C -0.072 4.072 20 H 0.254 0.746 21 H 0.104 0.896 22 H 0.135 0.865 23 H 0.090 0.910 24 H 0.210 0.790 25 H 0.226 0.774 26 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -1.955 4.907 1.143 5.405 hybrid contribution -0.447 -1.149 -1.345 1.824 sum -2.403 3.758 -0.201 4.465 Atomic orbital electron populations 1.25213 0.96287 1.00110 1.03773 1.22839 0.94409 1.00168 0.97483 1.19094 0.85514 0.83583 1.02090 1.43443 1.54414 1.11409 1.05158 1.19802 1.35798 0.94450 0.96896 0.89163 1.26127 0.93902 1.01320 0.98288 1.70061 1.32176 1.26941 1.21253 0.84836 0.78947 0.76857 0.76791 1.20159 1.19128 1.19159 1.15926 0.87710 0.82892 0.81659 1.90736 1.53192 1.28886 1.77131 1.43968 1.27408 1.22005 1.21339 1.23962 0.98722 0.92316 1.05397 1.22930 0.98536 1.02540 0.92675 1.70323 1.12303 1.09694 1.29480 1.25768 0.99819 0.96357 0.85303 0.74558 0.89618 0.86451 0.90971 0.79003 0.77404 0.75977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -8.55 19.18 74.32 1.43 -7.12 15 2 C -0.15 -6.07 8.40 31.12 0.26 -5.81 15 3 C 0.22 9.48 4.75 84.57 0.40 9.88 15 4 N -0.43 -21.40 2.61 -662.47 -1.73 -23.14 15 5 C -0.34 -18.22 9.49 84.03 0.80 -17.42 15 6 H 0.09 5.09 7.20 -2.91 -0.02 5.07 15 7 C 0.01 0.35 5.36 84.92 0.46 0.81 15 8 N -0.87 -40.90 7.97 21.66 0.17 -40.73 15 9 Si 1.00 39.27 29.55 68.60 2.03 41.30 15 10 H -0.28 -11.03 7.11 99.48 0.71 -10.33 15 11 H -0.27 -9.80 7.11 99.48 0.71 -9.09 15 12 H -0.27 -10.28 7.11 99.48 0.71 -9.57 15 13 C 0.61 30.72 7.98 179.06 1.43 32.15 15 14 O -0.62 -34.47 16.40 -3.71 -0.06 -34.53 15 15 N -0.45 -18.78 2.71 -489.62 -1.33 -20.11 15 16 C -0.08 -2.79 8.64 82.95 0.72 -2.07 15 17 C -0.02 -0.72 11.84 83.46 0.99 0.27 15 18 N -0.50 -17.79 11.24 -199.51 -2.24 -20.03 15 19 C 0.21 7.88 12.25 179.90 2.20 10.08 15 20 H 0.24 6.46 7.80 -4.43 -0.03 6.43 15 21 H 0.09 3.34 5.22 -2.39 -0.01 3.33 15 22 H 0.12 5.40 6.23 -2.39 -0.01 5.39 15 23 H 0.28 12.44 8.31 -92.71 -0.77 11.67 15 24 H 0.19 6.85 3.79 -2.91 -0.01 6.84 15 25 H 0.21 4.84 8.06 -2.91 -0.02 4.82 15 26 H 0.22 7.33 8.06 -2.91 -0.02 7.31 15 Total: -1.00 -61.34 234.35 6.73 -54.61 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: 1.21 Total: 21.84 kcal Atomic # 6 Polarization: 12.09 SS G_CDS: 8.68 Total: 20.77 kcal Atomic # 7 Polarization: -98.88 SS G_CDS: -5.13 Total: -104.00 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -0.06 Total: -34.53 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.03 Total: 41.30 kcal Total: -61.34 6.73 -54.61 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300912782.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.084 kcal (2) G-P(sol) polarization free energy of solvation -61.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds