Wall clock time and date at job start Thu Apr 9 2020 14:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38311 * 119.95861 * 2 1 4 4 C 1.38268 * 120.14416 * 180.02562 * 3 2 1 5 5 C 1.38125 * 120.07421 * 0.04300 * 4 3 2 6 6 C 1.38889 * 119.92697 * 359.97438 * 5 4 3 7 7 N 1.39678 * 120.07413 * 179.97438 * 6 5 4 8 8 C 1.46499 * 119.99952 * 354.23727 * 7 6 5 9 9 C 1.46498 * 120.00042 * 174.23278 * 7 6 5 10 10 H 1.08998 * 109.47003 * 4.75604 * 9 7 6 11 11 C 1.52988 * 109.47429 * 244.75591 * 9 7 6 12 12 C 1.50700 * 109.46824 * 124.75447 * 9 7 6 13 13 H 1.08000 * 120.00438 * 359.97438 * 12 9 7 14 14 C 1.37880 * 119.99783 * 180.02562 * 12 9 7 15 15 N 1.31514 * 119.99997 * 359.97438 * 14 12 9 16 16 Si 1.86800 * 119.99874 * 180.02562 * 14 12 9 17 17 H 1.48502 * 109.47048 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47122 * 119.99503 * 16 14 12 19 19 H 1.48501 * 109.47240 * 239.99483 * 16 14 12 20 20 C 1.38082 * 119.96115 * 180.02562 * 2 1 3 21 21 H 1.08997 * 109.47487 * 89.99793 * 1 2 3 22 22 H 1.09004 * 109.47015 * 209.99975 * 1 2 3 23 23 H 1.09001 * 109.46804 * 329.99663 * 1 2 3 24 24 H 1.07996 * 119.92672 * 0.02562 * 3 2 1 25 25 H 1.07992 * 119.95865 * 180.02562 * 4 3 2 26 26 H 1.08000 * 120.03184 * 179.70522 * 5 4 3 27 27 H 1.08997 * 109.47106 * 89.99633 * 8 7 6 28 28 H 1.08999 * 109.47031 * 210.00320 * 8 7 6 29 29 H 1.09003 * 109.47040 * 329.99605 * 8 7 6 30 30 H 1.09003 * 109.47763 * 180.02562 * 11 9 7 31 31 H 1.09005 * 109.46883 * 300.00317 * 11 9 7 32 32 H 1.09001 * 109.47502 * 59.99776 * 11 9 7 33 33 H 0.97003 * 119.99999 * 180.02562 * 15 14 12 34 34 H 1.08001 * 120.03789 * 359.94856 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1977 1.1983 0.0000 4 6 3.5804 1.2028 -0.0005 5 6 4.2765 0.0097 -0.0020 6 6 3.5859 -1.1953 -0.0023 7 7 4.2867 -2.4036 -0.0043 8 6 5.7460 -2.4038 -0.1334 9 6 3.5624 -3.6707 0.1228 10 1 2.4897 -3.4775 0.1225 11 6 3.9571 -4.3545 1.4331 12 6 3.9117 -4.5674 -1.0369 13 1 4.6036 -4.2273 -1.7933 14 6 3.3471 -5.8216 -1.1330 15 7 2.5041 -6.2355 -0.2123 16 14 3.7806 -6.9334 -2.5701 17 1 4.7446 -6.2383 -3.4605 18 1 4.3925 -8.1865 -2.0596 19 1 2.5489 -7.2592 -3.3331 20 6 2.1967 -1.1963 -0.0005 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5139 24 1 1.6559 2.1325 0.0004 25 1 4.1167 2.1402 -0.0001 26 1 5.3564 0.0140 -0.0072 27 1 6.1984 -2.3530 0.8570 28 1 6.0664 -3.3181 -0.6329 29 1 6.0589 -1.5404 -0.7205 30 1 3.4186 -5.2975 1.5276 31 1 5.0299 -4.5476 1.4334 32 1 3.7046 -3.7060 2.2720 33 1 2.1072 -7.1180 -0.2797 34 1 1.6566 -2.1316 -0.0001 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049806309.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:14:00 Heat of formation + Delta-G solvation = 10.988882 kcal Electronic energy + Delta-G solvation = -14785.052436 eV Core-core repulsion = 12489.038751 eV Total energy + Delta-G solvation = -2296.013684 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.45446 -37.77545 -35.00385 -33.26126 -31.51589 -30.58480 -27.55522 -27.27553 -26.59351 -23.71936 -21.84461 -20.77697 -18.54547 -17.95291 -16.95793 -16.24634 -15.97549 -15.33946 -15.02621 -14.76330 -14.37598 -14.16679 -14.00518 -13.48497 -13.14602 -12.94755 -12.79009 -12.76830 -12.69165 -12.47883 -12.23407 -12.16544 -11.98020 -11.48808 -11.10981 -10.53326 -10.37080 -9.47448 -8.24096 -7.83972 -6.31366 0.66386 0.91102 1.37813 1.40093 1.50937 2.35470 2.66700 3.09305 3.13332 4.06475 4.18433 4.32025 4.51660 4.58167 4.70543 4.72664 4.74610 4.84218 4.87121 4.90604 4.99172 5.05559 5.11751 5.20415 5.33529 5.44112 5.60090 5.62589 5.77511 5.87861 5.94629 6.14835 6.29037 6.53337 6.89911 7.01626 7.40010 8.87354 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.032393 B = 0.008312 C = 0.007536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.179542 B = 3367.955019 C = 3714.733923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.049 4.049 3 C -0.200 4.200 4 C -0.067 4.067 5 C -0.228 4.228 6 C 0.209 3.791 7 N -0.624 5.624 8 C 0.102 3.898 9 C 0.270 3.730 10 H 0.024 0.976 11 C -0.135 4.135 12 C -0.538 4.538 13 H 0.054 0.946 14 C 0.018 3.982 15 N -0.915 5.915 16 Si 0.960 3.040 17 H -0.270 1.270 18 H -0.276 1.276 19 H -0.281 1.281 20 C -0.232 4.232 21 H 0.075 0.925 22 H 0.055 0.945 23 H 0.088 0.912 24 H 0.141 0.859 25 H 0.148 0.852 26 H 0.129 0.871 27 H 0.045 0.955 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.033 0.967 32 H 0.018 0.982 33 H 0.265 0.735 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.043 11.414 0.456 11.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.050 4.050 3 C -0.220 4.220 4 C -0.086 4.086 5 C -0.251 4.251 6 C 0.104 3.896 7 N -0.331 5.331 8 C -0.041 4.041 9 C 0.167 3.833 10 H 0.042 0.958 11 C -0.193 4.193 12 C -0.576 4.576 13 H 0.072 0.928 14 C -0.182 4.182 15 N -0.554 5.554 16 Si 0.785 3.215 17 H -0.195 1.195 18 H -0.202 1.202 19 H -0.207 1.207 20 C -0.255 4.255 21 H 0.094 0.906 22 H 0.074 0.926 23 H 0.107 0.893 24 H 0.158 0.842 25 H 0.165 0.835 26 H 0.147 0.853 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.052 0.948 32 H 0.037 0.963 33 H 0.074 0.926 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.061 11.043 0.505 11.106 hybrid contribution 0.126 -1.233 -0.598 1.376 sum 1.186 9.811 -0.093 9.882 Atomic orbital electron populations 1.20812 0.90041 1.03077 1.02748 1.19965 0.96878 0.92307 0.95849 1.20970 0.94422 0.97218 1.09420 1.21150 0.94318 0.97388 0.95694 1.20825 1.00007 0.91012 1.13276 1.18335 0.91697 0.86852 0.92728 1.47059 1.06017 1.03581 1.76478 1.21485 0.80079 1.02233 1.00339 1.18568 0.91579 0.79862 0.93267 0.95839 1.21928 0.99700 1.01220 0.96494 1.21657 1.27179 1.00268 1.08536 0.92824 1.25656 0.94752 0.99045 0.98706 1.69997 1.30387 1.19932 1.35102 0.85484 0.78032 0.78646 0.79323 1.19495 1.20185 1.20682 1.20761 0.93017 0.98278 1.13457 0.90629 0.92599 0.89346 0.84156 0.83457 0.85347 0.93683 0.92208 0.90969 0.91271 0.94827 0.96287 0.92600 0.88507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.95 10.01 71.24 0.71 -2.24 16 2 C -0.05 -1.66 5.88 -19.88 -0.12 -1.78 16 3 C -0.20 -5.78 9.70 22.29 0.22 -5.56 16 4 C -0.07 -1.92 10.04 22.25 0.22 -1.69 16 5 C -0.23 -7.78 9.16 22.40 0.21 -7.58 16 6 C 0.21 8.71 6.54 38.21 0.25 8.96 16 7 N -0.62 -27.89 2.89 -702.30 -2.03 -29.92 16 8 C 0.10 3.80 9.22 127.77 1.18 4.98 16 9 C 0.27 13.91 2.58 44.24 0.11 14.02 16 10 H 0.02 1.35 5.31 -2.39 -0.01 1.34 16 11 C -0.13 -6.68 9.04 71.98 0.65 -6.03 16 12 C -0.54 -29.51 7.96 25.60 0.20 -29.30 16 13 H 0.05 2.95 7.00 -2.91 -0.02 2.93 16 14 C 0.02 0.98 5.30 84.66 0.45 1.43 16 15 N -0.92 -51.84 11.32 21.45 0.24 -51.60 16 16 Si 0.96 43.30 29.54 68.60 2.03 45.32 16 17 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 18 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 20 C -0.23 -9.73 8.96 22.40 0.20 -9.53 16 21 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 22 H 0.05 1.57 8.08 -2.39 -0.02 1.55 16 23 H 0.09 1.85 8.08 -2.39 -0.02 1.83 16 24 H 0.14 3.10 8.06 -2.91 -0.02 3.07 16 25 H 0.15 3.08 8.06 -2.91 -0.02 3.05 16 26 H 0.13 3.87 6.31 -2.91 -0.02 3.85 16 27 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.06 2.38 6.66 -2.39 -0.02 2.37 16 29 H 0.07 2.31 6.45 -2.39 -0.02 2.30 16 30 H 0.07 3.74 6.07 -2.39 -0.01 3.72 16 31 H 0.03 1.57 7.79 -2.38 -0.02 1.55 16 32 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 34 H 0.10 4.57 5.74 -2.91 -0.02 4.56 16 Total: -1.00 -60.81 275.82 5.60 -55.21 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 1.07 Total: 15.30 kcal Atomic # 6 Polarization: -38.61 SS G_CDS: 4.29 Total: -34.32 kcal Atomic # 7 Polarization: -79.73 SS G_CDS: -1.79 Total: -81.51 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -60.81 5.60 -55.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049806309.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.197 kcal (2) G-P(sol) polarization free energy of solvation -60.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds