Wall clock time and date at job start Thu Apr 9 2020 14:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38281 * 119.92435 * 2 1 4 4 C 1.38108 * 120.07459 * 179.70232 * 3 2 1 5 5 C 1.38915 * 119.92236 * 0.27583 * 4 3 2 6 6 N 1.39672 * 120.07419 * 179.97438 * 5 4 3 7 7 C 1.46502 * 120.00127 * 174.20074 * 6 5 4 8 8 C 1.46504 * 119.99890 * 354.20542 * 6 5 4 9 9 H 1.08993 * 109.47093 * 4.65627 * 8 6 5 10 10 C 1.53003 * 109.47214 * 124.65925 * 8 6 5 11 11 C 1.50700 * 109.46843 * 244.65778 * 8 6 5 12 12 H 1.07998 * 119.99953 * 0.02562 * 11 8 6 13 13 C 1.37881 * 119.99614 * 179.97438 * 11 8 6 14 14 N 1.31509 * 120.00082 * 0.02562 * 13 11 8 15 15 Si 1.86801 * 119.99466 * 179.97438 * 13 11 8 16 16 H 1.48503 * 109.47346 * 60.00174 * 15 13 11 17 17 H 1.48500 * 109.47036 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47476 * 300.00057 * 15 13 11 19 19 C 1.38905 * 119.85116 * 0.02562 * 5 4 3 20 20 C 1.38107 * 119.92683 * 359.97438 * 19 5 4 21 21 H 1.08994 * 109.47039 * 89.99717 * 1 2 3 22 22 H 1.08998 * 109.47204 * 210.00008 * 1 2 3 23 23 H 1.09001 * 109.46785 * 329.99862 * 1 2 3 24 24 H 1.08000 * 119.96659 * 359.97438 * 3 2 1 25 25 H 1.07993 * 120.04116 * 180.29866 * 4 3 2 26 26 H 1.08997 * 109.46709 * 90.00317 * 7 6 5 27 27 H 1.09001 * 109.47130 * 210.00359 * 7 6 5 28 28 H 1.09000 * 109.47038 * 330.00226 * 7 6 5 29 29 H 1.09005 * 109.47161 * 59.99553 * 10 8 6 30 30 H 1.08999 * 109.47170 * 179.97438 * 10 8 6 31 31 H 1.09003 * 109.47093 * 299.99753 * 10 8 6 32 32 H 0.97005 * 120.00002 * 180.02562 * 14 13 11 33 33 H 1.08007 * 120.03847 * 179.97438 * 19 5 4 34 34 H 1.07996 * 119.96526 * 180.02562 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1985 0.0000 4 6 3.5779 1.2021 0.0062 5 6 4.2740 -0.0001 0.0067 6 7 5.6707 -0.0001 0.0124 7 6 6.4027 -1.2626 0.1411 8 6 6.4038 1.2624 -0.1102 9 1 5.6984 2.0934 -0.1119 10 6 7.3644 1.4112 1.0714 11 6 7.1869 1.2656 -1.3977 12 1 7.1426 0.4127 -2.0588 13 6 7.9590 2.3579 -1.7322 14 7 8.0125 3.3966 -0.9275 15 14 8.9302 2.3614 -3.3279 16 1 7.9984 2.2160 -4.4750 17 1 9.6722 3.6417 -3.4529 18 1 9.8917 1.2298 -3.3248 19 6 3.5779 -1.2021 0.0003 20 6 2.1969 -1.1985 -0.0059 21 1 -0.3633 0.0001 -1.0276 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5139 24 1 1.6551 2.1327 -0.0004 25 1 4.1161 2.1384 0.0111 26 1 6.5884 -1.6774 -0.8496 27 1 7.3531 -1.0820 0.6434 28 1 5.8112 -1.9676 0.7252 29 1 8.0697 0.5802 1.0731 30 1 7.9101 2.3504 0.9799 31 1 6.7980 1.4090 2.0027 32 1 8.5554 4.1652 -1.1630 33 1 4.1161 -2.1385 0.0002 34 1 1.6550 -2.1327 -0.0104 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049806312.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:14:02 Heat of formation + Delta-G solvation = 26.211596 kcal Electronic energy + Delta-G solvation = -14691.477644 eV Core-core repulsion = 12396.124066 eV Total energy + Delta-G solvation = -2295.353578 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.99182 -36.24507 -33.15175 -31.20217 -30.51170 -28.94118 -26.77950 -25.26238 -24.27039 -21.95618 -20.84797 -19.17786 -16.75849 -16.31815 -15.11097 -14.62410 -14.21655 -13.72296 -13.62717 -13.22726 -13.11423 -12.95107 -12.44550 -11.82282 -11.51842 -11.50130 -11.32120 -11.11422 -10.88734 -10.81835 -10.55838 -10.41190 -10.13310 -9.87742 -9.29715 -8.65927 -8.45594 -8.29950 -6.36578 -6.02578 -4.18103 2.08400 2.26959 3.26594 3.31236 3.34217 4.16561 4.40702 4.52241 5.19225 5.37230 5.45094 5.62815 5.70986 5.87010 5.92195 6.04675 6.11255 6.16920 6.33135 6.41461 6.49459 6.58580 6.73469 6.86923 6.99570 7.03720 7.11823 7.26245 7.40771 7.60415 7.67350 7.88331 8.17478 8.34473 8.60765 8.89245 9.48948 10.93997 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.036656 B = 0.007494 C = 0.007152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.679296 B = 3735.332526 C = 3913.889063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.179 4.179 3 C -0.071 4.071 4 C -0.198 4.198 5 C 0.236 3.764 6 N -0.609 5.609 7 C 0.102 3.898 8 C 0.264 3.736 9 H 0.053 0.947 10 C -0.150 4.150 11 C -0.524 4.524 12 H 0.058 0.942 13 C 0.064 3.936 14 N -0.892 5.892 15 Si 0.898 3.102 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.277 1.277 19 C -0.218 4.218 20 C -0.072 4.072 21 H 0.055 0.945 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.111 0.889 25 H 0.128 0.872 26 H 0.038 0.962 27 H 0.066 0.934 28 H 0.049 0.951 29 H 0.031 0.969 30 H 0.093 0.907 31 H 0.012 0.988 32 H 0.264 0.736 33 H 0.113 0.887 34 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.024 -6.002 2.629 10.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.181 4.181 3 C -0.090 4.090 4 C -0.220 4.220 5 C 0.128 3.872 6 N -0.314 5.314 7 C -0.042 4.042 8 C 0.163 3.837 9 H 0.070 0.930 10 C -0.209 4.209 11 C -0.563 4.563 12 H 0.076 0.924 13 C -0.138 4.138 14 N -0.530 5.530 15 Si 0.725 3.275 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.203 1.203 19 C -0.241 4.241 20 C -0.091 4.091 21 H 0.073 0.927 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.129 0.871 25 H 0.146 0.854 26 H 0.057 0.943 27 H 0.085 0.915 28 H 0.067 0.933 29 H 0.050 0.950 30 H 0.111 0.889 31 H 0.031 0.969 32 H 0.074 0.926 33 H 0.131 0.869 34 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.662 -5.803 2.648 9.970 hybrid contribution 0.716 0.018 -0.953 1.192 sum -6.946 -5.785 1.696 9.197 Atomic orbital electron populations 1.20544 0.92427 1.01355 1.00948 1.19430 0.95067 0.93278 1.10367 1.20673 0.93472 0.96777 0.98034 1.20882 0.93935 0.97422 1.09762 1.17997 0.84253 0.93469 0.91454 1.47192 1.01260 1.08005 1.74983 1.21388 0.96753 0.86124 0.99969 1.18917 0.90418 0.80424 0.93893 0.92959 1.22131 0.99727 1.03218 0.95805 1.21400 1.27622 1.02567 1.04711 0.92384 1.24898 0.96506 0.95291 0.97106 1.69852 1.40553 1.06075 1.36536 0.86563 0.80005 0.77251 0.83649 1.20241 1.21158 1.20262 1.20563 0.94120 0.96321 1.13089 1.20564 0.93359 0.96651 0.98543 0.92668 0.92776 0.92644 0.87124 0.85437 0.94301 0.91515 0.93283 0.95027 0.88885 0.96879 0.92635 0.86878 0.87396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.19 10.01 36.01 0.36 -0.83 16 2 C -0.18 -2.88 5.88 -104.59 -0.62 -3.49 16 3 C -0.07 -1.23 9.69 -39.61 -0.38 -1.62 16 4 C -0.20 -4.01 9.31 -39.38 -0.37 -4.38 16 5 C 0.24 4.87 6.54 -83.79 -0.55 4.33 16 6 N -0.61 -13.31 2.89 -173.32 -0.50 -13.81 16 7 C 0.10 1.90 9.51 59.85 0.57 2.46 16 8 C 0.26 6.54 2.58 -69.08 -0.18 6.36 16 9 H 0.05 1.39 5.31 -51.93 -0.28 1.12 16 10 C -0.15 -3.56 8.85 37.16 0.33 -3.23 16 11 C -0.52 -14.15 8.44 -34.44 -0.29 -14.44 16 12 H 0.06 1.59 7.79 -52.49 -0.41 1.18 16 13 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 14 N -0.89 -24.67 11.32 55.43 0.63 -24.04 16 15 Si 0.90 21.08 29.54 -169.99 -5.02 16.05 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 C -0.22 -3.93 9.16 -39.38 -0.36 -4.29 16 20 C -0.07 -1.18 9.69 -39.61 -0.38 -1.56 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.05 0.60 8.09 -51.93 -0.42 0.18 16 23 H 0.05 0.63 8.08 -51.93 -0.42 0.21 16 24 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 25 H 0.13 2.75 5.74 -52.49 -0.30 2.45 16 26 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 1.24 6.19 -51.93 -0.32 0.92 16 28 H 0.05 0.78 6.46 -51.93 -0.34 0.45 16 29 H 0.03 0.71 6.53 -51.93 -0.34 0.37 16 30 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 31 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.11 1.86 6.31 -52.48 -0.33 1.53 16 34 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 LS Contribution 275.46 15.07 4.15 4.15 Total: -1.00 -27.89 275.46 -7.42 -35.31 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -4.72 Total: 1.39 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: -1.96 Total: -19.06 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: 0.13 Total: -37.85 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -27.89 -7.42 -35.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049806312.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.526 kcal (2) G-P(sol) polarization free energy of solvation -27.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds