Wall clock time and date at job start Thu Apr 9 2020 14:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38311 * 119.92515 * 2 1 4 4 C 1.38081 * 120.07458 * 180.27984 * 3 2 1 5 5 C 1.38940 * 119.92257 * 359.43770 * 4 3 2 6 6 N 1.39672 * 120.07103 * 180.25996 * 5 4 3 7 7 C 1.46507 * 119.99644 * 179.97438 * 6 5 4 8 8 C 1.46500 * 120.00547 * 359.97438 * 6 5 4 9 9 C 1.50703 * 109.46674 * 89.99774 * 8 6 5 10 10 H 1.07996 * 120.00701 * 0.02562 * 9 8 6 11 11 C 1.37877 * 119.99720 * 180.02562 * 9 8 6 12 12 N 1.31516 * 120.00079 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00159 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47492 * 89.99834 * 13 11 9 15 15 H 1.48495 * 109.47418 * 210.00239 * 13 11 9 16 16 H 1.48506 * 109.46767 * 330.00016 * 13 11 9 17 17 C 1.38882 * 119.84964 * 0.28125 * 5 4 3 18 18 C 1.38130 * 119.92768 * 0.02562 * 17 5 4 19 19 C 1.50705 * 119.96204 * 180.02562 * 18 17 5 20 20 H 1.08998 * 109.47133 * 270.27881 * 1 2 3 21 21 H 1.08999 * 109.46716 * 30.28524 * 1 2 3 22 22 H 1.09000 * 109.46703 * 150.27706 * 1 2 3 23 23 H 1.08004 * 119.96553 * 359.97438 * 3 2 1 24 24 H 1.08002 * 120.04165 * 179.72174 * 4 3 2 25 25 H 1.09006 * 109.46726 * 90.00099 * 7 6 5 26 26 H 1.08997 * 109.46876 * 209.99777 * 7 6 5 27 27 H 1.08993 * 109.47226 * 329.99965 * 7 6 5 28 28 H 1.08990 * 109.47405 * 210.00236 * 8 6 5 29 29 H 1.08996 * 109.46806 * 330.00694 * 8 6 5 30 30 H 0.97006 * 120.00220 * 180.02562 * 12 11 9 31 31 H 1.08007 * 120.03975 * 180.02562 * 17 5 4 32 32 H 1.08998 * 109.46692 * 90.00115 * 19 18 17 33 33 H 1.09002 * 109.46577 * 209.99690 * 19 18 17 34 34 H 1.09000 * 109.46874 * 329.99994 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1987 0.0000 4 6 3.5778 1.2023 -0.0058 5 6 4.2741 0.0000 0.0001 6 7 5.6708 0.0000 -0.0003 7 6 6.4033 -1.2687 0.0065 8 6 6.4033 1.2687 -0.0075 9 6 6.6548 1.7115 1.4108 10 1 6.3045 1.1082 2.2352 11 6 7.3323 2.8871 1.6561 12 7 7.7585 3.6222 0.6523 13 14 7.6447 3.4358 3.4142 14 1 8.9402 2.8817 3.8829 15 1 7.6918 4.9190 3.4689 16 1 6.5502 2.9427 4.2884 17 6 3.5780 -1.2018 0.0060 18 6 2.1967 -1.1983 0.0054 19 6 1.4407 -2.5019 0.0123 20 1 -0.3633 0.0050 1.0276 21 1 -0.3633 0.8874 -0.5183 22 1 -0.3633 -0.8925 -0.5095 23 1 1.6552 2.1330 -0.0004 24 1 4.1160 2.1387 -0.0104 25 1 6.5847 -1.5891 -1.0195 26 1 7.3558 -1.1355 0.5193 27 1 5.8144 -2.0255 0.5247 28 1 7.3555 1.1355 -0.5209 29 1 5.8141 2.0255 -0.5253 30 1 8.2354 4.4491 0.8248 31 1 4.1162 -2.1383 0.0110 32 1 1.2580 -2.8104 1.0417 33 1 0.4887 -2.3725 -0.5026 34 1 2.0286 -3.2655 -0.4970 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049806315.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:14:09 Heat of formation + Delta-G solvation = 3.173533 kcal Electronic energy + Delta-G solvation = -14544.364334 eV Core-core repulsion = 12248.011750 eV Total energy + Delta-G solvation = -2296.352583 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.55815 -37.65002 -34.86520 -33.38344 -32.40440 -30.03731 -28.04681 -27.65935 -25.75711 -23.86622 -22.54085 -20.46040 -18.63337 -17.86901 -16.99680 -16.38345 -15.71579 -15.42949 -14.96927 -14.78987 -14.70018 -14.06797 -14.02059 -13.45169 -13.21580 -13.13375 -13.05288 -12.69494 -12.62836 -12.58191 -12.50222 -12.18142 -11.82658 -11.70771 -11.37217 -10.65811 -10.25732 -9.47534 -8.36699 -7.77929 -6.39551 0.66116 0.87020 1.35368 1.36570 1.47883 2.33064 2.62594 3.04106 3.08076 4.04477 4.14234 4.27781 4.42372 4.47411 4.63225 4.67783 4.73614 4.83642 4.85953 4.93589 5.01098 5.01937 5.13496 5.15393 5.20355 5.37347 5.39918 5.60975 5.69169 5.75474 5.98182 6.05620 6.26028 6.49600 6.81368 6.93574 7.32502 8.81764 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.034558 B = 0.007476 C = 0.006814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.045753 B = 3744.362632 C = 4108.319483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.171 4.171 3 C -0.078 4.078 4 C -0.221 4.221 5 C 0.207 3.793 6 N -0.633 5.633 7 C 0.099 3.901 8 C 0.267 3.733 9 C -0.543 4.543 10 H 0.048 0.952 11 C 0.012 3.988 12 N -0.927 5.927 13 Si 0.963 3.037 14 H -0.269 1.269 15 H -0.277 1.277 16 H -0.273 1.273 17 C -0.218 4.218 18 C -0.048 4.048 19 C -0.109 4.109 20 H 0.067 0.933 21 H 0.063 0.937 22 H 0.081 0.919 23 H 0.126 0.874 24 H 0.094 0.906 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.009 0.991 29 H 0.010 0.990 30 H 0.268 0.732 31 H 0.131 0.869 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.608 -10.188 -0.953 15.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.173 4.173 3 C -0.097 4.097 4 C -0.244 4.244 5 C 0.103 3.897 6 N -0.342 5.342 7 C -0.044 4.044 8 C 0.145 3.855 9 C -0.582 4.582 10 H 0.066 0.934 11 C -0.187 4.187 12 N -0.567 5.567 13 Si 0.788 3.212 14 H -0.194 1.194 15 H -0.203 1.203 16 H -0.198 1.198 17 C -0.241 4.241 18 C -0.048 4.048 19 C -0.165 4.165 20 H 0.086 0.914 21 H 0.082 0.918 22 H 0.099 0.901 23 H 0.144 0.856 24 H 0.112 0.888 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.095 0.905 28 H 0.027 0.973 29 H 0.027 0.973 30 H 0.077 0.923 31 H 0.149 0.851 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.272 -10.037 -1.008 15.127 hybrid contribution 0.949 0.977 0.749 1.554 sum -10.323 -9.060 -0.259 13.738 Atomic orbital electron populations 1.20689 0.89306 1.03117 1.02249 1.19783 0.97282 0.91921 1.08309 1.20921 0.92434 0.98546 0.97795 1.20796 0.95271 0.96580 1.11763 1.18197 0.83635 0.94535 0.93314 1.46936 1.02360 1.06865 1.78011 1.21587 0.96630 0.85274 1.00907 1.18761 0.90246 0.81025 0.95451 1.21785 1.36199 1.06895 0.93313 0.93359 1.25806 0.95082 0.96219 1.01624 1.70041 1.38960 1.14934 1.32755 0.85477 0.78717 0.77552 0.79471 1.19416 1.20258 1.19765 1.20675 0.94451 0.95709 1.13269 1.19839 0.92447 0.96203 0.96338 1.20870 1.00209 0.92396 1.03005 0.91407 0.91772 0.90067 0.85563 0.88750 0.92986 0.92462 0.90482 0.97258 0.97253 0.92326 0.85114 0.90375 0.89602 0.91049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.09 9.60 71.24 0.68 -1.41 16 2 C -0.17 -5.24 5.88 -19.84 -0.12 -5.36 16 3 C -0.08 -2.84 9.69 22.25 0.22 -2.63 16 4 C -0.22 -9.82 9.21 22.40 0.21 -9.62 16 5 C 0.21 8.97 6.55 38.21 0.25 9.22 16 6 N -0.63 -29.00 2.99 -726.56 -2.17 -31.18 16 7 C 0.10 3.59 10.19 127.77 1.30 4.89 16 8 C 0.27 14.51 4.91 85.63 0.42 14.93 16 9 C -0.54 -31.38 9.39 25.60 0.24 -31.14 16 10 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 11 C 0.01 0.68 5.46 84.65 0.46 1.14 16 12 N -0.93 -55.39 13.29 21.45 0.28 -55.10 16 13 Si 0.96 44.80 29.54 68.60 2.03 46.83 16 14 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 15 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 16 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 17 C -0.22 -7.69 8.86 22.40 0.20 -7.50 16 18 C -0.05 -1.44 5.88 -19.88 -0.12 -1.55 16 19 C -0.11 -2.21 9.60 71.24 0.68 -1.53 16 20 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 21 H 0.06 1.28 8.09 -2.39 -0.02 1.26 16 22 H 0.08 1.40 5.94 -2.39 -0.01 1.39 16 23 H 0.13 4.01 8.06 -2.91 -0.02 3.99 16 24 H 0.09 4.77 6.14 -2.91 -0.02 4.75 16 25 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 26 H 0.06 2.14 8.07 -2.39 -0.02 2.12 16 27 H 0.08 2.39 6.20 -2.39 -0.01 2.37 16 28 H 0.01 0.54 8.07 -2.39 -0.02 0.52 16 29 H 0.01 0.56 6.20 -2.39 -0.01 0.54 16 30 H 0.27 14.99 8.31 -92.70 -0.77 14.22 16 31 H 0.13 4.02 6.14 -2.91 -0.02 4.00 16 32 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.09 1.42 5.94 -2.39 -0.01 1.40 16 34 H 0.07 1.31 8.08 -2.39 -0.02 1.29 16 Total: -1.00 -65.49 279.83 5.64 -59.85 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 1.07 Total: 10.16 kcal Atomic # 6 Polarization: -34.99 SS G_CDS: 4.43 Total: -30.56 kcal Atomic # 7 Polarization: -84.39 SS G_CDS: -1.89 Total: -86.28 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -65.49 5.64 -59.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049806315.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.023 kcal (2) G-P(sol) polarization free energy of solvation -65.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds