Wall clock time and date at job start Thu Apr 9 2020 14:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38302 * 119.96758 * 2 1 4 4 C 1.38260 * 120.15447 * 179.97438 * 3 2 1 5 5 C 1.38127 * 120.07388 * 0.04181 * 4 3 2 6 6 C 1.38885 * 119.92502 * 359.97438 * 5 4 3 7 7 N 1.39677 * 120.07727 * 179.97438 * 6 5 4 8 8 C 1.46891 * 110.99994 * 63.97290 * 7 6 5 9 9 C 1.46903 * 110.99573 * 300.01623 * 7 6 5 10 10 C 1.50700 * 109.47110 * 189.99912 * 9 7 6 11 11 H 1.08002 * 119.99917 * 359.97438 * 10 9 7 12 12 C 1.37875 * 119.99868 * 180.02562 * 10 9 7 13 13 N 1.31511 * 120.00178 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 119.99689 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47348 * 359.97438 * 14 12 10 16 16 H 1.48492 * 109.47422 * 119.99589 * 14 12 10 17 17 H 1.48502 * 109.46815 * 239.99499 * 14 12 10 18 18 C 1.38091 * 119.96047 * 180.02562 * 2 1 3 19 19 C 1.50702 * 120.03543 * 0.25846 * 18 2 1 20 20 H 1.09001 * 109.47081 * 269.95649 * 1 2 3 21 21 H 1.09002 * 109.46779 * 29.95662 * 1 2 3 22 22 H 1.08998 * 109.47508 * 149.95285 * 1 2 3 23 23 H 1.08007 * 119.92335 * 359.97438 * 3 2 1 24 24 H 1.08002 * 119.96778 * 180.02562 * 4 3 2 25 25 H 1.08007 * 120.03668 * 180.02562 * 5 4 3 26 26 H 1.09000 * 109.47639 * 60.00446 * 8 7 6 27 27 H 1.09007 * 109.47317 * 180.02562 * 8 7 6 28 28 H 1.08999 * 109.47146 * 300.00018 * 8 7 6 29 29 H 1.08992 * 109.47557 * 310.00174 * 9 7 6 30 30 H 1.09008 * 109.46598 * 70.00494 * 9 7 6 31 31 H 0.97004 * 119.99744 * 180.02562 * 13 12 10 32 32 H 1.08998 * 109.46764 * 269.71583 * 19 18 2 33 33 H 1.08992 * 109.47200 * 29.72360 * 19 18 2 34 34 H 1.09002 * 109.46842 * 149.72320 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1978 1.1981 0.0000 4 6 3.5804 1.2026 0.0005 5 6 4.2764 0.0096 0.0002 6 6 3.5859 -1.1954 -0.0001 7 7 4.2866 -2.4038 -0.0010 8 6 5.0717 -2.5579 1.2309 9 6 5.1437 -2.5143 -1.1890 10 6 5.6905 -3.9153 -1.2853 11 1 5.4279 -4.6500 -0.5384 12 6 6.5267 -4.2589 -2.3262 13 7 6.8469 -3.3642 -3.2353 14 14 7.2039 -5.9958 -2.4459 15 1 6.6963 -6.8045 -1.3087 16 1 6.7667 -6.6105 -3.7250 17 1 8.6875 -5.9529 -2.3990 18 6 2.1966 -1.1964 -0.0005 19 6 1.4430 -2.5014 -0.0070 20 1 -0.3633 -0.0008 1.0277 21 1 -0.3633 0.8904 -0.5132 22 1 -0.3634 -0.8895 -0.5145 23 1 1.6560 2.1325 -0.0004 24 1 4.1168 2.1400 0.0010 25 1 5.3565 0.0138 0.0010 26 1 4.4036 -2.5421 2.0920 27 1 5.6076 -3.5067 1.2039 28 1 5.7869 -1.7392 1.3108 29 1 4.5589 -2.2904 -2.0811 30 1 5.9691 -1.8069 -1.1085 31 1 7.4350 -3.6061 -3.9679 32 1 1.2617 -2.8213 1.0191 33 1 0.4905 -2.3684 -0.5199 34 1 2.0319 -3.2585 -0.5249 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049806317.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:14:13 Heat of formation + Delta-G solvation = 21.993306 kcal Electronic energy + Delta-G solvation = -14717.230510 eV Core-core repulsion = 12421.694014 eV Total energy + Delta-G solvation = -2295.536497 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.52074 -36.18278 -32.90582 -32.61054 -30.50875 -27.35688 -26.87046 -26.03252 -24.70404 -22.20111 -20.46973 -19.52101 -16.54418 -15.81928 -15.36696 -14.92421 -14.55940 -14.03556 -13.37673 -13.28821 -13.04351 -12.54441 -12.33516 -12.10708 -12.01595 -11.62574 -11.44142 -11.27761 -10.99221 -10.86639 -10.58387 -10.52605 -10.43372 -9.98001 -9.26081 -8.46831 -8.13143 -7.96467 -7.39218 -6.04438 -4.06463 1.78506 1.83869 3.30053 3.37470 3.42170 4.15144 4.40987 4.87481 5.16964 5.29078 5.31537 5.48369 5.52525 5.66709 5.73520 5.86234 5.98393 6.10040 6.15666 6.19735 6.28272 6.36846 6.41782 6.68926 6.77494 6.91431 6.94417 7.13576 7.21348 7.35207 7.48180 7.83245 8.07328 8.15915 8.62383 9.00915 9.57726 11.06364 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.041015 B = 0.007265 C = 0.006919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.515327 B = 3852.983498 C = 4045.606199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.092 4.092 3 C -0.136 4.136 4 C -0.118 4.118 5 C -0.152 4.152 6 C 0.116 3.884 7 N -0.511 5.511 8 C 0.044 3.956 9 C 0.199 3.801 10 C -0.509 4.509 11 H 0.065 0.935 12 C 0.055 3.945 13 N -0.897 5.897 14 Si 0.899 3.101 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.285 1.285 18 C -0.071 4.071 19 C -0.106 4.106 20 H 0.065 0.935 21 H 0.060 0.940 22 H 0.069 0.931 23 H 0.113 0.887 24 H 0.113 0.887 25 H 0.117 0.883 26 H 0.046 0.954 27 H 0.079 0.921 28 H 0.015 0.985 29 H 0.030 0.970 30 H -0.005 1.005 31 H 0.261 0.739 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.130 6.245 6.972 13.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.092 4.092 3 C -0.154 4.154 4 C -0.137 4.137 5 C -0.173 4.173 6 C 0.021 3.979 7 N -0.232 5.232 8 C -0.103 4.103 9 C 0.075 3.925 10 C -0.547 4.547 11 H 0.084 0.916 12 C -0.146 4.146 13 N -0.537 5.537 14 Si 0.726 3.274 15 H -0.196 1.196 16 H -0.210 1.210 17 H -0.211 1.211 18 C -0.072 4.072 19 C -0.162 4.162 20 H 0.083 0.917 21 H 0.079 0.921 22 H 0.088 0.912 23 H 0.131 0.869 24 H 0.131 0.869 25 H 0.135 0.865 26 H 0.065 0.935 27 H 0.098 0.902 28 H 0.034 0.966 29 H 0.048 0.952 30 H 0.013 0.987 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.346 5.846 6.786 12.945 hybrid contribution 1.237 -0.079 -0.247 1.264 sum -8.109 5.767 6.539 11.906 Atomic orbital electron populations 1.20792 0.91727 1.02474 1.01797 1.19631 0.95559 0.92614 1.01428 1.20834 0.94100 0.96945 1.03517 1.20899 0.94157 0.97448 1.01174 1.21768 1.00298 0.93285 1.01914 1.19004 0.92730 0.89507 0.96635 1.59841 1.30381 1.28256 1.04733 1.22220 0.95658 1.01630 0.90791 1.19793 0.89712 0.97113 0.85837 1.21186 1.27533 0.96062 1.09958 0.91641 1.24995 0.96445 0.97553 0.95602 1.69978 1.36286 1.33852 1.13541 0.86429 0.78516 0.84366 0.78047 1.19614 1.20981 1.21103 1.19695 0.92516 0.94881 1.00107 1.20680 0.98763 0.95127 1.01634 0.91677 0.92145 0.91187 0.86872 0.86868 0.86487 0.93541 0.90207 0.96596 0.95169 0.98695 0.92930 0.92107 0.92567 0.89660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 9.60 36.00 0.35 -0.97 16 2 C -0.09 -1.42 5.88 -104.65 -0.62 -2.04 16 3 C -0.14 -2.04 9.70 -39.55 -0.38 -2.42 16 4 C -0.12 -1.91 10.04 -39.61 -0.40 -2.30 16 5 C -0.15 -2.90 8.66 -39.38 -0.34 -3.24 16 6 C 0.12 2.35 4.66 -83.79 -0.39 1.96 16 7 N -0.51 -11.40 3.68 -180.33 -0.66 -12.07 16 8 C 0.04 0.88 9.20 60.06 0.55 1.43 16 9 C 0.20 5.28 4.30 -4.97 -0.02 5.26 16 10 C -0.51 -14.29 8.46 -34.44 -0.29 -14.58 16 11 H 0.07 1.81 7.12 -52.49 -0.37 1.43 16 12 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 13 N -0.90 -26.82 13.29 55.43 0.74 -26.09 16 14 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 15 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 C -0.07 -1.28 5.90 -104.42 -0.62 -1.89 16 19 C -0.11 -1.71 9.36 36.01 0.34 -1.38 16 20 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 21 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 22 H 0.07 0.79 5.94 -51.93 -0.31 0.49 16 23 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 24 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 25 H 0.12 2.28 7.14 -52.48 -0.37 1.91 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.08 1.66 6.76 -51.93 -0.35 1.31 16 28 H 0.02 0.31 7.34 -51.93 -0.38 -0.07 16 29 H 0.03 0.88 8.06 -51.93 -0.42 0.46 16 30 H 0.00 -0.13 7.48 -51.92 -0.39 -0.52 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.06 0.77 5.94 -51.93 -0.31 0.47 16 34 H 0.08 1.60 7.46 -51.93 -0.39 1.21 16 LS Contribution 279.19 15.07 4.21 4.21 Total: -1.00 -30.08 279.19 -7.62 -37.70 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -4.96 Total: -1.64 kcal Atomic # 6 Polarization: -16.77 SS G_CDS: -1.92 Total: -18.69 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.07 Total: -38.15 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -30.08 -7.62 -37.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049806317.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.693 kcal (2) G-P(sol) polarization free energy of solvation -30.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds