Wall clock time and date at job start Thu Apr 9 2020 14:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38102 * 120.03502 * 2 1 4 4 C 1.38291 * 120.07205 * 179.72446 * 3 2 1 5 5 C 1.38285 * 120.14873 * 0.30105 * 4 3 2 6 6 C 1.38102 * 120.07337 * 359.97438 * 5 4 3 7 7 C 1.50705 * 120.03252 * 180.02562 * 6 5 4 8 8 C 1.38902 * 119.93108 * 359.97438 * 6 5 4 9 9 N 1.39667 * 120.07956 * 180.02562 * 8 6 5 10 10 C 1.46902 * 111.00151 * 270.36631 * 9 8 6 11 11 C 1.53000 * 109.47345 * 185.15341 * 10 9 8 12 12 C 1.50705 * 109.46977 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00282 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99763 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00004 * 180.02562 * 14 12 11 16 16 Si 1.86796 * 120.00032 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.47183 * 90.00514 * 16 14 12 18 18 H 1.48500 * 109.47272 * 210.00000 * 16 14 12 19 19 H 1.48499 * 109.47492 * 330.00333 * 16 14 12 20 20 H 1.09002 * 109.47135 * 95.15971 * 1 2 3 21 21 H 1.09001 * 109.47156 * 215.15726 * 1 2 3 22 22 H 1.08997 * 109.46999 * 335.16069 * 1 2 3 23 23 H 1.08003 * 119.96324 * 0.02562 * 3 2 1 24 24 H 1.07999 * 119.92065 * 180.27797 * 4 3 2 25 25 H 1.07996 * 119.95992 * 179.97438 * 5 4 3 26 26 H 1.08997 * 109.47143 * 90.00284 * 7 6 5 27 27 H 1.09004 * 109.47213 * 209.99707 * 7 6 5 28 28 H 1.08998 * 109.47391 * 329.99432 * 7 6 5 29 29 H 1.00898 * 111.00344 * 34.31854 * 9 8 6 30 30 H 1.09004 * 109.47276 * 305.15317 * 10 9 8 31 31 H 1.09004 * 109.46970 * 65.15232 * 10 9 8 32 32 H 1.08996 * 109.47062 * 299.99889 * 11 10 9 33 33 H 1.08994 * 109.47037 * 59.99989 * 11 10 9 34 34 H 0.96998 * 120.00183 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1956 0.0000 4 6 3.5812 1.1965 0.0058 5 6 4.2765 0.0011 0.0052 6 6 3.5915 -1.1980 -0.0005 7 6 4.3501 -2.5001 -0.0005 8 6 2.2025 -1.2026 -0.0052 9 7 1.5065 -2.4135 -0.0105 10 6 1.2564 -2.8710 -1.3838 11 6 0.3843 -4.1277 -1.3519 12 6 0.1283 -4.5974 -2.7608 13 1 0.5455 -4.0537 -3.5955 14 6 -0.6395 -5.7206 -2.9842 15 7 -0.8625 -6.1308 -4.2137 16 14 -1.3617 -6.6606 -1.5406 17 1 -2.7028 -6.1128 -1.2143 18 1 -1.4871 -8.0965 -1.8978 19 1 -0.4693 -6.5199 -0.3619 20 1 -0.3633 -0.0924 -1.0235 21 1 -0.3633 -0.8402 0.5918 22 1 -0.3633 0.9326 0.4317 23 1 1.6583 2.1309 0.0004 24 1 4.1193 2.1329 0.0103 25 1 5.3565 0.0054 0.0093 26 1 4.5287 -2.8165 1.0272 27 1 3.7662 -3.2609 -0.5185 28 1 5.3041 -2.3648 -0.5101 29 1 1.9990 -3.1160 0.5206 30 1 0.7432 -2.0867 -1.9403 31 1 2.2053 -3.0995 -1.8691 32 1 0.8974 -4.9120 -0.7955 33 1 -0.5646 -3.8993 -0.8666 34 1 -1.4023 -6.9213 -4.3709 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051753696.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:14:20 Heat of formation + Delta-G solvation = 8.230405 kcal Electronic energy + Delta-G solvation = -14445.317368 eV Core-core repulsion = 12149.184067 eV Total energy + Delta-G solvation = -2296.133301 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.76560 -35.76308 -33.38660 -32.97668 -31.01112 -29.19262 -26.66773 -26.38590 -24.03099 -20.99254 -20.64400 -20.35597 -16.96190 -16.61717 -15.76745 -14.87339 -14.38751 -14.16023 -13.88267 -13.36001 -13.12564 -12.92258 -12.78934 -12.57767 -12.49429 -11.71832 -11.48584 -11.39121 -11.19207 -10.99048 -10.92055 -10.30510 -9.91280 -9.81965 -9.25651 -8.73320 -8.54798 -8.40330 -7.78332 -6.05910 -4.04794 1.50001 1.55476 3.31683 3.38733 3.43003 3.85564 4.44618 4.58193 4.95456 4.96720 5.11757 5.28463 5.35726 5.55315 5.63469 5.66147 5.75180 5.92242 5.99833 6.01716 6.12273 6.14931 6.29707 6.51067 6.60294 6.64154 6.70741 6.82189 6.96032 7.24346 7.31891 7.59179 7.79451 7.88432 8.50777 8.97916 9.56019 11.07352 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.040090 B = 0.006612 C = 0.006241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.254440 B = 4233.653535 C = 4485.053573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.074 4.074 3 C -0.120 4.120 4 C -0.134 4.134 5 C -0.117 4.117 6 C -0.125 4.125 7 C -0.120 4.120 8 C 0.110 3.890 9 N -0.651 5.651 10 C 0.081 3.919 11 C -0.009 4.009 12 C -0.522 4.522 13 H 0.071 0.929 14 C 0.068 3.932 15 N -0.903 5.903 16 Si 0.882 3.118 17 H -0.276 1.276 18 H -0.289 1.289 19 H -0.265 1.265 20 H 0.068 0.932 21 H 0.079 0.921 22 H 0.054 0.946 23 H 0.119 0.881 24 H 0.116 0.884 25 H 0.115 0.885 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.346 0.654 30 H 0.067 0.933 31 H 0.029 0.971 32 H 0.014 0.986 33 H 0.022 0.978 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.924 11.604 10.199 17.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.075 4.075 3 C -0.138 4.138 4 C -0.152 4.152 5 C -0.135 4.135 6 C -0.128 4.128 7 C -0.177 4.177 8 C 0.012 3.988 9 N -0.278 5.278 10 C -0.044 4.044 11 C -0.047 4.047 12 C -0.561 4.561 13 H 0.089 0.911 14 C -0.133 4.133 15 N -0.542 5.542 16 Si 0.710 3.290 17 H -0.202 1.202 18 H -0.215 1.215 19 H -0.190 1.190 20 H 0.086 0.914 21 H 0.098 0.902 22 H 0.073 0.927 23 H 0.137 0.863 24 H 0.134 0.866 25 H 0.133 0.867 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.166 0.834 30 H 0.086 0.914 31 H 0.048 0.952 32 H 0.033 0.967 33 H 0.040 0.960 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.182 11.699 10.136 17.064 hybrid contribution 0.515 -0.821 0.363 1.035 sum 7.697 10.878 10.499 16.965 Atomic orbital electron populations 1.20660 0.90717 1.02192 1.02687 1.19782 0.96489 0.91470 0.99777 1.20922 0.94118 0.97154 1.01636 1.20983 0.94271 0.97589 1.02368 1.20820 0.99214 0.91910 1.01595 1.20470 0.94025 0.95740 1.02571 1.20802 1.00064 0.94637 1.02157 1.18616 0.89566 0.91711 0.98877 1.57983 1.49662 1.03678 1.16502 1.22030 0.98863 0.98762 0.84776 1.19563 0.95196 0.92038 0.97884 1.21038 1.32263 1.11376 0.91381 0.91095 1.24995 0.95747 0.96998 0.95586 1.69914 1.39543 1.25062 1.19648 0.86741 0.80000 0.78948 0.83358 1.20215 1.21479 1.18974 0.91371 0.90173 0.92698 0.86317 0.86583 0.86663 0.91321 0.91151 0.91430 0.83362 0.91424 0.95227 0.96728 0.95974 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 9.70 36.01 0.35 -1.16 16 2 C -0.07 -1.12 5.90 -104.42 -0.62 -1.73 16 3 C -0.12 -1.57 9.67 -39.61 -0.38 -1.96 16 4 C -0.13 -1.65 10.04 -39.54 -0.40 -2.05 16 5 C -0.12 -1.51 9.70 -39.61 -0.38 -1.89 16 6 C -0.13 -1.82 5.90 -104.42 -0.62 -2.44 16 7 C -0.12 -1.53 9.25 36.01 0.33 -1.19 16 8 C 0.11 1.77 5.24 -83.79 -0.44 1.33 16 9 N -0.65 -11.28 5.21 -58.36 -0.30 -11.58 16 10 C 0.08 1.65 5.25 -3.82 -0.02 1.63 16 11 C -0.01 -0.21 4.34 -27.88 -0.12 -0.34 16 12 C -0.52 -14.89 9.66 -34.44 -0.33 -15.22 16 13 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 14 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 15 N -0.90 -27.88 13.96 55.43 0.77 -27.11 16 16 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 20 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 21 H 0.08 1.23 7.64 -51.93 -0.40 0.83 16 22 H 0.05 0.64 8.05 -51.93 -0.42 0.23 16 23 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 24 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 25 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.07 1.00 5.82 -51.93 -0.30 0.69 16 28 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 29 H 0.35 5.59 7.32 -39.29 -0.29 5.30 16 30 H 0.07 1.43 8.11 -51.93 -0.42 1.01 16 31 H 0.03 0.61 7.12 -51.93 -0.37 0.24 16 32 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 33 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 34 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 281.18 15.07 4.24 4.24 Total: -1.00 -30.52 281.18 -7.77 -38.29 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -5.08 Total: 2.17 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: -2.72 Total: -23.13 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.47 Total: -38.69 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.52 -7.77 -38.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051753696.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.516 kcal (2) G-P(sol) polarization free energy of solvation -30.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds