Wall clock time and date at job start Thu Apr 9 2020 14:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38102 * 120.03502 * 2 1 4 4 C 1.38291 * 120.07205 * 179.72446 * 3 2 1 5 5 C 1.38285 * 120.14873 * 0.30105 * 4 3 2 6 6 C 1.38102 * 120.07337 * 359.97438 * 5 4 3 7 7 C 1.50705 * 120.03252 * 180.02562 * 6 5 4 8 8 C 1.38902 * 119.93108 * 359.97438 * 6 5 4 9 9 N 1.39667 * 120.07956 * 180.02562 * 8 6 5 10 10 C 1.46902 * 111.00151 * 270.36631 * 9 8 6 11 11 C 1.53000 * 109.47345 * 185.15341 * 10 9 8 12 12 C 1.50705 * 109.46977 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00282 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99763 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00004 * 180.02562 * 14 12 11 16 16 Si 1.86796 * 120.00032 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.47183 * 90.00514 * 16 14 12 18 18 H 1.48500 * 109.47272 * 210.00000 * 16 14 12 19 19 H 1.48499 * 109.47492 * 330.00333 * 16 14 12 20 20 H 1.09002 * 109.47135 * 95.15971 * 1 2 3 21 21 H 1.09001 * 109.47156 * 215.15726 * 1 2 3 22 22 H 1.08997 * 109.46999 * 335.16069 * 1 2 3 23 23 H 1.08003 * 119.96324 * 0.02562 * 3 2 1 24 24 H 1.07999 * 119.92065 * 180.27797 * 4 3 2 25 25 H 1.07996 * 119.95992 * 179.97438 * 5 4 3 26 26 H 1.08997 * 109.47143 * 90.00284 * 7 6 5 27 27 H 1.09004 * 109.47213 * 209.99707 * 7 6 5 28 28 H 1.08998 * 109.47391 * 329.99432 * 7 6 5 29 29 H 1.00898 * 111.00344 * 34.31854 * 9 8 6 30 30 H 1.09004 * 109.47276 * 305.15317 * 10 9 8 31 31 H 1.09004 * 109.46970 * 65.15232 * 10 9 8 32 32 H 1.08996 * 109.47062 * 299.99889 * 11 10 9 33 33 H 1.08994 * 109.47037 * 59.99989 * 11 10 9 34 34 H 0.96998 * 120.00183 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1956 0.0000 4 6 3.5812 1.1965 0.0058 5 6 4.2765 0.0011 0.0052 6 6 3.5915 -1.1980 -0.0005 7 6 4.3501 -2.5001 -0.0005 8 6 2.2025 -1.2026 -0.0052 9 7 1.5065 -2.4135 -0.0105 10 6 1.2564 -2.8710 -1.3838 11 6 0.3843 -4.1277 -1.3519 12 6 0.1283 -4.5974 -2.7608 13 1 0.5455 -4.0537 -3.5955 14 6 -0.6395 -5.7206 -2.9842 15 7 -0.8625 -6.1308 -4.2137 16 14 -1.3617 -6.6606 -1.5406 17 1 -2.7028 -6.1128 -1.2143 18 1 -1.4871 -8.0965 -1.8978 19 1 -0.4693 -6.5199 -0.3619 20 1 -0.3633 -0.0924 -1.0235 21 1 -0.3633 -0.8402 0.5918 22 1 -0.3633 0.9326 0.4317 23 1 1.6583 2.1309 0.0004 24 1 4.1193 2.1329 0.0103 25 1 5.3565 0.0054 0.0093 26 1 4.5287 -2.8165 1.0272 27 1 3.7662 -3.2609 -0.5185 28 1 5.3041 -2.3648 -0.5101 29 1 1.9990 -3.1160 0.5206 30 1 0.7432 -2.0867 -1.9403 31 1 2.2053 -3.0995 -1.8691 32 1 0.8974 -4.9120 -0.7955 33 1 -0.5646 -3.8993 -0.8666 34 1 -1.4023 -6.9213 -4.3709 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051753696.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:14:20 Heat of formation + Delta-G solvation = -9.690410 kcal Electronic energy + Delta-G solvation = -14446.094473 eV Core-core repulsion = 12149.184067 eV Total energy + Delta-G solvation = -2296.910406 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.88074 -37.17389 -35.02592 -34.41150 -32.65079 -30.62595 -27.92611 -27.47029 -25.79813 -22.43039 -22.05947 -21.57559 -19.01457 -17.93775 -16.96117 -16.33639 -15.82984 -15.71833 -15.31655 -14.71262 -14.55744 -14.43178 -14.02379 -13.78581 -13.59384 -13.33085 -13.01359 -12.73278 -12.47014 -12.26240 -12.23650 -11.89636 -11.78324 -11.64075 -11.44659 -10.78507 -10.02336 -9.44074 -9.02426 -8.31017 -6.36206 0.43399 0.49116 1.37465 1.38286 1.51058 2.35865 2.78517 3.04575 3.28636 3.92779 3.95852 4.16808 4.32056 4.40520 4.44078 4.54775 4.65956 4.69844 4.74228 4.85667 4.89786 4.94733 4.97717 5.13605 5.31805 5.40977 5.43207 5.55600 5.60812 5.62890 5.72121 5.95163 6.21316 6.27674 6.60846 6.72247 7.28726 8.85710 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.040090 B = 0.006612 C = 0.006241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.254440 B = 4233.653535 C = 4485.053573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.092 4.092 3 C -0.124 4.124 4 C -0.127 4.127 5 C -0.122 4.122 6 C -0.135 4.135 7 C -0.118 4.118 8 C 0.075 3.925 9 N -0.645 5.645 10 C 0.100 3.900 11 C -0.001 4.001 12 C -0.534 4.534 13 H 0.030 0.970 14 C 0.007 3.993 15 N -0.950 5.950 16 Si 0.954 3.046 17 H -0.267 1.267 18 H -0.283 1.283 19 H -0.246 1.246 20 H 0.054 0.946 21 H 0.064 0.936 22 H 0.080 0.920 23 H 0.143 0.857 24 H 0.149 0.851 25 H 0.141 0.859 26 H 0.084 0.916 27 H 0.049 0.951 28 H 0.082 0.918 29 H 0.352 0.648 30 H 0.051 0.949 31 H 0.021 0.979 32 H 0.023 0.977 33 H 0.024 0.976 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.790 12.648 12.349 19.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.094 4.094 3 C -0.143 4.143 4 C -0.145 4.145 5 C -0.140 4.140 6 C -0.138 4.138 7 C -0.175 4.175 8 C -0.022 4.022 9 N -0.273 5.273 10 C -0.027 4.027 11 C -0.039 4.039 12 C -0.573 4.573 13 H 0.048 0.952 14 C -0.190 4.190 15 N -0.591 5.591 16 Si 0.777 3.223 17 H -0.193 1.193 18 H -0.209 1.209 19 H -0.169 1.169 20 H 0.072 0.928 21 H 0.083 0.917 22 H 0.098 0.902 23 H 0.161 0.839 24 H 0.166 0.834 25 H 0.159 0.841 26 H 0.103 0.897 27 H 0.068 0.932 28 H 0.101 0.899 29 H 0.173 0.827 30 H 0.070 0.930 31 H 0.039 0.961 32 H 0.041 0.959 33 H 0.042 0.958 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.067 12.767 12.303 19.479 hybrid contribution 0.334 -1.019 -0.373 1.136 sum 8.401 11.748 11.930 18.733 Atomic orbital electron populations 1.20619 0.90690 1.02904 1.01701 1.20035 0.96893 0.92100 1.00324 1.21247 0.94842 0.97301 1.00863 1.21419 0.94128 0.98783 1.00201 1.21178 1.00637 0.91471 1.00759 1.20707 0.93579 0.97185 1.02302 1.20813 1.00152 0.93406 1.03089 1.18786 0.90548 0.91241 1.01601 1.57822 1.50739 1.04440 1.14302 1.21604 0.97497 0.96770 0.86786 1.19423 0.95967 0.93659 0.94856 1.21352 1.31979 1.11270 0.92693 0.95197 1.25983 0.96155 0.98108 0.98716 1.70064 1.40741 1.25973 1.22280 0.85601 0.79555 0.77290 0.79827 1.19257 1.20884 1.16908 0.92775 0.91690 0.90163 0.83913 0.83375 0.84130 0.89722 0.93161 0.89924 0.82742 0.92995 0.96124 0.95891 0.95813 0.92379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.86 9.70 71.24 0.69 -2.17 16 2 C -0.09 -2.69 5.90 -19.73 -0.12 -2.81 16 3 C -0.12 -2.94 9.67 22.25 0.22 -2.73 16 4 C -0.13 -2.70 10.04 22.29 0.22 -2.48 16 5 C -0.12 -2.80 9.70 22.25 0.22 -2.58 16 6 C -0.14 -3.72 5.90 -19.74 -0.12 -3.83 16 7 C -0.12 -2.83 9.25 71.24 0.66 -2.17 16 8 C 0.07 2.36 5.24 38.21 0.20 2.56 16 9 N -0.65 -22.27 5.21 -338.54 -1.76 -24.03 16 10 C 0.10 4.15 5.25 86.30 0.45 4.60 16 11 C 0.00 -0.06 4.34 29.85 0.13 0.07 16 12 C -0.53 -31.39 9.66 25.60 0.25 -31.14 16 13 H 0.03 1.94 7.99 -2.91 -0.02 1.91 16 14 C 0.01 0.44 5.47 84.65 0.46 0.90 16 15 N -0.95 -60.16 13.96 21.45 0.30 -59.86 16 16 Si 0.95 44.74 27.47 68.60 1.88 46.62 16 17 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 18 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 19 H -0.25 -10.67 6.54 99.48 0.65 -10.02 16 20 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 21 H 0.06 1.98 7.64 -2.39 -0.02 1.97 16 22 H 0.08 1.76 8.05 -2.39 -0.02 1.74 16 23 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 24 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 25 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 26 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.05 1.40 5.82 -2.39 -0.01 1.39 16 28 H 0.08 1.69 8.09 -2.39 -0.02 1.68 16 29 H 0.35 11.19 7.32 -89.70 -0.66 10.53 16 30 H 0.05 2.29 8.11 -2.38 -0.02 2.27 16 31 H 0.02 0.88 7.12 -2.39 -0.02 0.86 16 32 H 0.02 1.06 7.20 -2.39 -0.02 1.04 16 33 H 0.02 1.12 7.57 -2.39 -0.02 1.11 16 34 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -66.83 281.18 4.05 -62.78 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: 0.36 Total: 16.27 kcal Atomic # 6 Polarization: -45.04 SS G_CDS: 3.27 Total: -41.78 kcal Atomic # 7 Polarization: -82.43 SS G_CDS: -1.46 Total: -83.89 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.88 Total: 46.62 kcal Total: -66.83 4.05 -62.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051753696.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.092 kcal (2) G-P(sol) polarization free energy of solvation -66.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds