Wall clock time and date at job start Thu Apr 9 2020 14:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50698 * 109.47210 * 2 1 4 4 C 1.38054 * 120.04575 * 264.99820 * 3 2 1 5 5 C 1.38325 * 120.08577 * 180.27780 * 4 3 2 6 6 C 1.38329 * 120.18169 * 359.48636 * 5 4 3 7 7 C 1.38042 * 120.09196 * 0.51854 * 6 5 4 8 8 C 1.50704 * 120.04838 * 179.76375 * 7 6 5 9 9 C 1.52999 * 109.47031 * 309.83103 * 8 7 6 10 10 C 1.39084 * 120.04214 * 85.02457 * 3 2 1 11 11 N 1.39299 * 120.09029 * 359.95721 * 10 3 2 12 12 C 1.36845 * 120.00102 * 102.54115 * 11 10 3 13 13 H 1.07993 * 120.00081 * 8.65026 * 12 11 10 14 14 C 1.38798 * 119.99855 * 188.65090 * 12 11 10 15 15 N 1.31593 * 119.99750 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99963 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47226 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.46804 * 119.99956 * 16 14 12 19 19 H 1.48498 * 109.47164 * 239.99980 * 16 14 12 20 20 H 1.09004 * 109.47300 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47420 * 299.99882 * 1 2 3 22 22 H 1.09002 * 109.47199 * 60.00155 * 1 2 3 23 23 H 1.09002 * 109.47327 * 239.99577 * 2 1 3 24 24 H 1.09006 * 109.47420 * 120.00557 * 2 1 3 25 25 H 1.07993 * 119.95376 * 0.02562 * 4 3 2 26 26 H 1.08004 * 119.90678 * 179.74820 * 5 4 3 27 27 H 1.08002 * 119.95358 * 180.25886 * 6 5 4 28 28 H 1.08995 * 109.47027 * 69.83295 * 8 7 6 29 29 H 1.08998 * 109.47005 * 189.82944 * 8 7 6 30 30 H 1.09002 * 109.47175 * 307.09532 * 9 8 7 31 31 H 1.08994 * 109.46900 * 67.09465 * 9 8 7 32 32 H 1.08995 * 109.47079 * 187.09969 * 9 8 7 33 33 H 0.97004 * 119.99489 * 282.53005 * 11 10 3 34 34 H 0.97005 * 119.99889 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3609 2.0377 -1.1905 5 6 2.8275 3.3399 -1.1909 6 6 2.9568 4.0328 -0.0007 7 6 2.6304 3.4231 1.1940 8 6 2.7767 4.1770 2.4907 9 6 4.1709 4.8032 2.5620 10 6 2.1659 2.1121 1.1995 11 7 1.8351 1.4933 2.4028 12 6 2.8228 1.0185 3.2223 13 1 3.8569 1.2446 3.0086 14 6 2.4955 0.2463 4.3283 15 7 1.2353 -0.0287 4.5889 16 14 3.8438 -0.4023 5.4466 17 1 5.1658 0.0450 4.9390 18 1 3.6398 0.1194 6.8218 19 1 3.7977 -1.8864 5.4682 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5139 0.8900 25 1 2.2574 1.5016 -2.1222 26 1 3.0877 3.8184 -2.1236 27 1 3.3176 5.0507 -0.0057 28 1 2.0226 4.9624 2.5413 29 1 2.6433 3.4908 3.3270 30 1 4.9237 4.0350 2.3854 31 1 4.2594 5.5801 1.8028 32 1 4.3227 5.2405 3.5488 33 1 0.9045 1.3991 2.6599 34 1 1.0066 -0.5687 5.3617 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051787623.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:14:22 Heat of formation + Delta-G solvation = 14.176829 kcal Electronic energy + Delta-G solvation = -14971.534013 eV Core-core repulsion = 12675.658569 eV Total energy + Delta-G solvation = -2295.875445 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.05148 -34.57101 -34.31084 -32.12893 -30.95993 -28.14783 -27.67448 -24.11481 -23.58558 -22.37615 -20.35695 -19.19887 -17.34517 -16.15108 -15.12241 -14.72084 -14.13650 -13.75159 -13.44713 -13.24717 -13.10672 -12.78971 -12.29562 -11.85579 -11.56498 -11.44655 -11.09968 -10.99575 -10.84275 -10.61281 -10.46602 -10.20821 -10.15204 -9.97045 -9.71996 -9.07073 -7.84142 -7.77083 -7.07677 -5.91890 -3.24634 2.13666 2.21399 3.36065 3.43223 3.44862 4.43351 4.57543 5.40608 5.47037 5.54252 5.55165 5.62305 5.81380 5.82511 5.94988 6.03028 6.09237 6.10165 6.22702 6.35483 6.41484 6.52686 6.70029 6.72601 6.75871 6.87493 6.93437 7.15168 7.21277 7.35847 7.61125 7.68690 7.83399 8.34415 9.36618 10.04535 10.22170 11.28451 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.022901 B = 0.011759 C = 0.008659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.370233 B = 2380.667369 C = 3233.022462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.075 4.075 3 C -0.109 4.109 4 C -0.121 4.121 5 C -0.154 4.154 6 C -0.121 4.121 7 C -0.106 4.106 8 C -0.086 4.086 9 C -0.140 4.140 10 C 0.210 3.790 11 N -0.673 5.673 12 C -0.243 4.243 13 H 0.074 0.926 14 C -0.002 4.002 15 N -0.923 5.923 16 Si 0.908 3.092 17 H -0.278 1.278 18 H -0.290 1.290 19 H -0.289 1.289 20 H 0.048 0.952 21 H 0.058 0.942 22 H 0.042 0.958 23 H 0.051 0.949 24 H 0.087 0.913 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.107 0.893 28 H 0.056 0.944 29 H 0.099 0.901 30 H 0.052 0.948 31 H 0.043 0.957 32 H 0.048 0.952 33 H 0.393 0.607 34 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.494 5.121 -7.943 9.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.112 4.112 3 C -0.112 4.112 4 C -0.140 4.140 5 C -0.173 4.173 6 C -0.140 4.140 7 C -0.109 4.109 8 C -0.123 4.123 9 C -0.197 4.197 10 C 0.111 3.889 11 N -0.309 5.309 12 C -0.373 4.373 13 H 0.092 0.908 14 C -0.200 4.200 15 N -0.569 5.569 16 Si 0.738 3.262 17 H -0.203 1.203 18 H -0.217 1.217 19 H -0.216 1.216 20 H 0.067 0.933 21 H 0.077 0.923 22 H 0.061 0.939 23 H 0.070 0.930 24 H 0.106 0.894 25 H 0.124 0.876 26 H 0.124 0.876 27 H 0.125 0.875 28 H 0.074 0.926 29 H 0.118 0.882 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.230 0.770 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.620 5.001 -7.769 9.381 hybrid contribution 0.418 -0.389 0.634 0.853 sum 2.038 4.613 -7.136 8.738 Atomic orbital electron populations 1.21637 0.95721 1.00766 1.01274 1.20328 0.95390 0.93162 1.02321 1.20537 1.01302 0.95976 0.93366 1.20767 1.01297 0.95125 0.96773 1.20785 1.03986 0.95348 0.97151 1.20737 1.01831 0.99126 0.92258 1.20501 1.01481 0.94334 0.94600 1.20460 0.95905 0.98941 0.96980 1.21712 0.97709 0.99974 1.00330 1.17489 0.94102 0.89830 0.87478 1.39870 1.07216 1.66947 1.16842 1.19180 0.88409 1.25027 1.04668 0.90806 1.24800 0.96293 0.99751 0.99114 1.69664 1.15478 1.42264 1.29495 0.86115 0.81088 0.78541 0.80474 1.20296 1.21661 1.21623 0.93325 0.92289 0.93922 0.93039 0.89437 0.87597 0.87612 0.87518 0.92563 0.88207 0.92851 0.93747 0.93276 0.76989 0.93217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.89 37.15 0.37 -1.99 16 2 C -0.07 -1.41 5.76 -27.89 -0.16 -1.57 16 3 C -0.11 -2.15 5.15 -104.38 -0.54 -2.69 16 4 C -0.12 -2.10 9.67 -39.62 -0.38 -2.49 16 5 C -0.15 -2.54 10.04 -39.52 -0.40 -2.93 16 6 C -0.12 -2.10 9.20 -39.62 -0.36 -2.46 16 7 C -0.11 -2.10 5.47 -104.38 -0.57 -2.67 16 8 C -0.09 -1.61 6.10 -27.88 -0.17 -1.78 16 9 C -0.14 -2.25 9.47 37.16 0.35 -1.90 16 10 C 0.21 4.57 5.85 -83.84 -0.49 4.08 16 11 N -0.67 -16.41 3.50 -9.60 -0.03 -16.44 16 12 C -0.24 -6.44 8.56 -15.11 -0.13 -6.57 16 13 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 14 C 0.00 -0.06 5.50 -17.45 -0.10 -0.16 16 15 N -0.92 -26.37 13.07 55.49 0.73 -25.64 16 16 Si 0.91 21.67 29.55 -169.99 -5.02 16.65 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 21 H 0.06 1.12 7.95 -51.93 -0.41 0.71 16 22 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.05 0.85 8.05 -51.93 -0.42 0.44 16 24 H 0.09 1.93 7.63 -51.93 -0.40 1.54 16 25 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 26 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 27 H 0.11 1.61 7.14 -52.49 -0.37 1.23 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.10 2.19 5.97 -51.93 -0.31 1.88 16 30 H 0.05 0.91 8.13 -51.93 -0.42 0.49 16 31 H 0.04 0.62 7.21 -51.93 -0.37 0.25 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.39 10.15 7.87 -40.82 -0.32 9.83 16 34 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 282.91 15.07 4.26 4.26 Total: -1.00 -27.41 282.91 -7.76 -35.17 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -5.11 Total: 9.13 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: -2.58 Total: -23.14 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: 0.69 Total: -42.08 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -27.41 -7.76 -35.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051787623.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.350 kcal (2) G-P(sol) polarization free energy of solvation -27.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds