Wall clock time and date at job start Thu Apr 9 2020 14:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50698 * 109.47210 * 2 1 4 4 C 1.38054 * 120.04575 * 264.99820 * 3 2 1 5 5 C 1.38325 * 120.08577 * 180.27780 * 4 3 2 6 6 C 1.38329 * 120.18169 * 359.48636 * 5 4 3 7 7 C 1.38042 * 120.09196 * 0.51854 * 6 5 4 8 8 C 1.50704 * 120.04838 * 179.76375 * 7 6 5 9 9 C 1.52999 * 109.47031 * 309.83103 * 8 7 6 10 10 C 1.39084 * 120.04214 * 85.02457 * 3 2 1 11 11 N 1.39299 * 120.09029 * 359.95721 * 10 3 2 12 12 C 1.36845 * 120.00102 * 102.54115 * 11 10 3 13 13 H 1.07993 * 120.00081 * 8.65026 * 12 11 10 14 14 C 1.38798 * 119.99855 * 188.65090 * 12 11 10 15 15 N 1.31593 * 119.99750 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99963 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47226 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.46804 * 119.99956 * 16 14 12 19 19 H 1.48498 * 109.47164 * 239.99980 * 16 14 12 20 20 H 1.09004 * 109.47300 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47420 * 299.99882 * 1 2 3 22 22 H 1.09002 * 109.47199 * 60.00155 * 1 2 3 23 23 H 1.09002 * 109.47327 * 239.99577 * 2 1 3 24 24 H 1.09006 * 109.47420 * 120.00557 * 2 1 3 25 25 H 1.07993 * 119.95376 * 0.02562 * 4 3 2 26 26 H 1.08004 * 119.90678 * 179.74820 * 5 4 3 27 27 H 1.08002 * 119.95358 * 180.25886 * 6 5 4 28 28 H 1.08995 * 109.47027 * 69.83295 * 8 7 6 29 29 H 1.08998 * 109.47005 * 189.82944 * 8 7 6 30 30 H 1.09002 * 109.47175 * 307.09532 * 9 8 7 31 31 H 1.08994 * 109.46900 * 67.09465 * 9 8 7 32 32 H 1.08995 * 109.47079 * 187.09969 * 9 8 7 33 33 H 0.97004 * 119.99489 * 282.53005 * 11 10 3 34 34 H 0.97005 * 119.99889 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3609 2.0377 -1.1905 5 6 2.8275 3.3399 -1.1909 6 6 2.9568 4.0328 -0.0007 7 6 2.6304 3.4231 1.1940 8 6 2.7767 4.1770 2.4907 9 6 4.1709 4.8032 2.5620 10 6 2.1659 2.1121 1.1995 11 7 1.8351 1.4933 2.4028 12 6 2.8228 1.0185 3.2223 13 1 3.8569 1.2446 3.0086 14 6 2.4955 0.2463 4.3283 15 7 1.2353 -0.0287 4.5889 16 14 3.8438 -0.4023 5.4466 17 1 5.1658 0.0450 4.9390 18 1 3.6398 0.1194 6.8218 19 1 3.7977 -1.8864 5.4682 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5139 0.8900 25 1 2.2574 1.5016 -2.1222 26 1 3.0877 3.8184 -2.1236 27 1 3.3176 5.0507 -0.0057 28 1 2.0226 4.9624 2.5413 29 1 2.6433 3.4908 3.3270 30 1 4.9237 4.0350 2.3854 31 1 4.2594 5.5801 1.8028 32 1 4.3227 5.2405 3.5488 33 1 0.9045 1.3991 2.6599 34 1 1.0066 -0.5687 5.3617 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051787623.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:14:22 Heat of formation + Delta-G solvation = 0.584542 kcal Electronic energy + Delta-G solvation = -14972.123419 eV Core-core repulsion = 12675.658569 eV Total energy + Delta-G solvation = -2296.464850 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.55010 -36.33891 -35.76309 -33.73975 -32.72092 -29.54271 -29.31906 -26.01810 -24.98914 -23.90053 -21.85073 -20.67389 -19.34357 -17.75911 -16.62954 -16.30980 -15.87562 -15.46983 -14.99898 -14.75148 -14.61147 -14.21764 -13.77830 -13.25420 -13.15419 -12.97564 -12.87558 -12.68673 -12.31920 -12.21087 -12.09877 -11.96460 -11.82367 -11.47831 -11.33692 -10.97534 -9.44291 -9.26131 -8.89083 -7.98215 -5.31629 0.69756 0.74933 1.44251 1.45433 1.54805 2.51649 3.06907 3.36745 3.93047 4.04617 4.10394 4.24110 4.40538 4.49501 4.56797 4.63087 4.71480 4.72690 4.84836 4.91732 5.04775 5.14274 5.22062 5.28567 5.36076 5.39400 5.45555 5.56567 5.64274 5.80333 5.87645 6.18758 6.21281 6.44335 7.27467 8.13768 8.22775 9.22697 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.022901 B = 0.011759 C = 0.008659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.370233 B = 2380.667369 C = 3233.022462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.071 4.071 3 C -0.121 4.121 4 C -0.122 4.122 5 C -0.139 4.139 6 C -0.121 4.121 7 C -0.119 4.119 8 C -0.085 4.085 9 C -0.132 4.132 10 C 0.166 3.834 11 N -0.679 5.679 12 C -0.230 4.230 13 H 0.065 0.935 14 C -0.059 4.059 15 N -0.958 5.958 16 Si 0.966 3.034 17 H -0.270 1.270 18 H -0.291 1.291 19 H -0.292 1.292 20 H 0.059 0.941 21 H 0.030 0.970 22 H 0.065 0.935 23 H 0.077 0.923 24 H 0.044 0.956 25 H 0.137 0.863 26 H 0.147 0.853 27 H 0.137 0.863 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.037 0.963 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.379 0.621 34 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.626 6.529 -10.396 12.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.108 4.108 3 C -0.124 4.124 4 C -0.140 4.140 5 C -0.157 4.157 6 C -0.139 4.139 7 C -0.122 4.122 8 C -0.122 4.122 9 C -0.189 4.189 10 C 0.069 3.931 11 N -0.314 5.314 12 C -0.360 4.360 13 H 0.083 0.917 14 C -0.252 4.252 15 N -0.608 5.608 16 Si 0.795 3.205 17 H -0.195 1.195 18 H -0.218 1.218 19 H -0.219 1.219 20 H 0.078 0.922 21 H 0.049 0.951 22 H 0.084 0.916 23 H 0.096 0.904 24 H 0.063 0.937 25 H 0.155 0.845 26 H 0.165 0.835 27 H 0.154 0.846 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.214 0.786 34 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.784 6.440 -10.272 12.439 hybrid contribution 0.077 -0.718 1.215 1.414 sum 2.861 5.722 -9.056 11.088 Atomic orbital electron populations 1.21562 0.94696 1.01440 1.00941 1.20268 0.96303 0.92870 1.01389 1.20690 1.01576 0.96406 0.93757 1.21106 1.00295 0.95822 0.96799 1.21283 1.01270 0.94712 0.98412 1.21062 1.00975 1.00436 0.91458 1.20676 1.01478 0.93943 0.96085 1.20399 0.98061 0.98431 0.95311 1.21652 0.95230 1.00027 1.02015 1.17870 0.97064 0.91013 0.87144 1.39726 1.05938 1.67809 1.17956 1.19273 0.88480 1.23885 1.04403 0.91662 1.25459 0.98081 1.00857 1.00810 1.69798 1.17063 1.43768 1.30123 0.85194 0.79137 0.77553 0.78630 1.19457 1.21765 1.21894 0.92193 0.95090 0.91613 0.90429 0.93718 0.84537 0.83549 0.84571 0.91419 0.92310 0.94339 0.90966 0.92198 0.78621 0.93796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.42 9.89 71.98 0.71 -3.71 16 2 C -0.07 -2.66 5.76 29.84 0.17 -2.49 16 3 C -0.12 -4.70 5.15 -19.71 -0.10 -4.80 16 4 C -0.12 -3.80 9.67 22.25 0.22 -3.58 16 5 C -0.14 -3.91 10.04 22.31 0.22 -3.69 16 6 C -0.12 -3.77 9.20 22.24 0.20 -3.56 16 7 C -0.12 -4.60 5.47 -19.71 -0.11 -4.71 16 8 C -0.08 -3.15 6.10 29.85 0.18 -2.97 16 9 C -0.13 -4.02 9.47 71.98 0.68 -3.34 16 10 C 0.17 7.29 5.85 38.36 0.22 7.51 16 11 N -0.68 -34.68 3.50 -184.29 -0.65 -35.33 16 12 C -0.23 -12.68 8.56 84.05 0.72 -11.96 16 13 H 0.07 3.63 7.83 -2.91 -0.02 3.61 16 14 C -0.06 -3.32 5.50 84.86 0.47 -2.85 16 15 N -0.96 -57.29 13.07 21.65 0.28 -57.01 16 16 Si 0.97 45.93 29.55 68.60 2.03 47.96 16 17 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 18 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 19 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 20 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 21 H 0.03 1.21 7.95 -2.39 -0.02 1.19 16 22 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 23 H 0.08 2.44 8.05 -2.39 -0.02 2.42 16 24 H 0.04 2.05 7.63 -2.38 -0.02 2.03 16 25 H 0.14 3.42 8.06 -2.91 -0.02 3.39 16 26 H 0.15 3.02 8.06 -2.91 -0.02 2.99 16 27 H 0.14 3.42 7.14 -2.91 -0.02 3.40 16 28 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.06 2.67 5.97 -2.39 -0.01 2.66 16 30 H 0.04 1.26 8.13 -2.39 -0.02 1.24 16 31 H 0.07 1.78 7.21 -2.39 -0.02 1.76 16 32 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.38 20.86 7.87 -92.71 -0.73 20.13 16 34 H 0.25 14.67 8.31 -92.70 -0.77 13.90 16 Total: -1.00 -61.51 282.91 5.60 -55.91 By element: Atomic # 1 Polarization: 28.27 SS G_CDS: 0.35 Total: 28.61 kcal Atomic # 6 Polarization: -43.74 SS G_CDS: 3.59 Total: -40.15 kcal Atomic # 7 Polarization: -91.98 SS G_CDS: -0.36 Total: -92.34 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -61.51 5.60 -55.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051787623.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.495 kcal (2) G-P(sol) polarization free energy of solvation -61.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds