Wall clock time and date at job start Thu Apr 9 2020 14:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47156 * 2 1 4 4 C 1.50704 * 109.46779 * 119.99663 * 2 1 3 5 5 C 1.38235 * 119.99943 * 120.00116 * 4 2 1 6 6 C 1.38230 * 120.00080 * 180.02562 * 5 4 2 7 7 C 1.38235 * 120.00296 * 359.95530 * 6 5 4 8 8 C 1.50701 * 120.00138 * 180.02562 * 7 6 5 9 9 H 1.08992 * 109.47217 * 340.00362 * 8 7 6 10 10 N 1.46901 * 109.46883 * 219.99742 * 8 7 6 11 11 C 1.50699 * 109.46837 * 100.00154 * 8 7 6 12 12 H 1.08002 * 120.00511 * 0.02562 * 11 8 7 13 13 C 1.37884 * 119.99783 * 179.97438 * 11 8 7 14 14 N 1.31514 * 119.99573 * 180.27665 * 13 11 8 15 15 Si 1.86800 * 119.99781 * 359.97438 * 13 11 8 16 16 H 1.48501 * 109.46758 * 89.99934 * 15 13 11 17 17 H 1.48499 * 109.47026 * 209.99782 * 15 13 11 18 18 H 1.48496 * 109.47474 * 329.99818 * 15 13 11 19 19 C 1.38235 * 119.99778 * 0.27610 * 7 6 5 20 20 C 1.38236 * 120.00149 * 300.01826 * 4 2 1 21 21 H 1.09000 * 109.47024 * 300.00274 * 1 2 3 22 22 H 1.08996 * 109.46677 * 60.00081 * 1 2 3 23 23 H 1.08995 * 109.46871 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47024 * 239.99726 * 2 1 3 25 25 H 1.08999 * 109.47060 * 180.02562 * 3 2 1 26 26 H 1.09003 * 109.46934 * 299.99682 * 3 2 1 27 27 H 1.09000 * 109.47378 * 59.99942 * 3 2 1 28 28 H 1.08003 * 119.99873 * 359.97438 * 5 4 2 29 29 H 1.08005 * 120.00250 * 179.97438 * 6 5 4 30 30 H 1.00899 * 111.00549 * 300.00105 * 10 8 7 31 31 H 1.00907 * 110.99790 * 63.95798 * 10 8 7 32 32 H 0.97004 * 119.99485 * 179.72881 * 14 13 11 33 33 H 1.07997 * 120.00201 * 179.72563 * 19 7 6 34 34 H 1.07997 * 120.00089 * 0.02562 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 6 2.8271 -1.8343 1.1038 6 6 3.2873 -2.4862 2.2325 7 6 2.9537 -2.0137 3.4880 8 6 3.4560 -2.7241 4.7185 9 1 3.7450 -3.7421 4.4577 10 7 2.3923 -2.7611 5.7310 11 6 4.6498 -1.9888 5.2708 12 1 5.0087 -1.0961 4.7802 13 6 5.2834 -2.4552 6.4032 14 7 6.3219 -1.8104 6.8883 15 14 4.6613 -3.9980 7.2531 16 1 5.3443 -5.1868 6.6826 17 1 4.9490 -3.9122 8.7074 18 1 3.1962 -4.1214 7.0447 19 6 2.1550 -0.8926 3.6148 20 6 1.6980 -0.2383 2.4861 21 1 -0.3633 0.5139 0.8900 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 3.1301 1.4425 -0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6768 1.9564 0.8900 28 1 3.0877 -2.2036 0.1229 29 1 3.9079 -3.3646 2.1335 30 1 2.1066 -1.8286 5.9897 31 1 1.6051 -3.3041 5.4088 32 1 6.7651 -2.1363 7.6873 33 1 1.8907 -0.5260 4.5956 34 1 1.0766 0.6394 2.5851 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071500281.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:14:27 Heat of formation + Delta-G solvation = 12.060473 kcal Electronic energy + Delta-G solvation = -14516.789108 eV Core-core repulsion = 12220.821891 eV Total energy + Delta-G solvation = -2295.967217 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.23876 -36.05978 -33.77675 -31.72648 -30.36471 -28.83642 -27.11961 -26.17916 -23.20559 -22.33038 -20.44228 -19.37745 -16.82782 -16.09794 -15.16608 -14.72418 -14.45170 -14.03270 -13.67660 -13.48325 -13.41912 -12.79013 -12.39116 -12.30023 -12.25263 -11.85578 -11.49636 -11.13949 -10.99539 -10.72454 -10.66394 -10.32342 -10.05785 -9.84219 -9.23609 -8.51564 -8.37133 -7.84526 -7.17759 -5.98170 -4.08012 1.95497 1.95741 3.52529 3.62743 3.94516 4.33043 4.72851 4.84384 4.92853 5.26103 5.31568 5.44996 5.48504 5.56402 5.61485 5.76147 5.81539 5.83812 5.94252 5.95803 6.07800 6.16041 6.26417 6.33478 6.50645 6.62360 6.84506 7.02790 7.07058 7.35497 7.56508 7.66764 8.19831 8.36145 8.72672 9.02884 9.66167 11.11635 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.052229 B = 0.006797 C = 0.006601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.973942 B = 4118.595323 C = 4240.884337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.052 4.052 3 C -0.143 4.143 4 C -0.103 4.103 5 C -0.120 4.120 6 C -0.120 4.120 7 C -0.068 4.068 8 C 0.217 3.783 9 H 0.044 0.956 10 N -0.834 5.834 11 C -0.519 4.519 12 H 0.068 0.932 13 C 0.084 3.916 14 N -0.901 5.901 15 Si 0.867 3.133 16 H -0.297 1.297 17 H -0.304 1.304 18 H -0.192 1.192 19 C -0.117 4.117 20 C -0.116 4.116 21 H 0.055 0.945 22 H 0.052 0.948 23 H 0.054 0.946 24 H 0.071 0.929 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.111 0.889 29 H 0.116 0.884 30 H 0.329 0.671 31 H 0.307 0.693 32 H 0.263 0.737 33 H 0.117 0.883 34 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.411 1.964 -11.798 16.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.070 4.070 3 C -0.200 4.200 4 C -0.103 4.103 5 C -0.138 4.138 6 C -0.138 4.138 7 C -0.070 4.070 8 C 0.108 3.892 9 H 0.062 0.938 10 N -0.363 5.363 11 C -0.557 4.557 12 H 0.087 0.913 13 C -0.120 4.120 14 N -0.538 5.538 15 Si 0.694 3.306 16 H -0.225 1.225 17 H -0.232 1.232 18 H -0.113 1.113 19 C -0.135 4.135 20 C -0.134 4.134 21 H 0.074 0.926 22 H 0.071 0.929 23 H 0.073 0.927 24 H 0.089 0.911 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.129 0.871 29 H 0.134 0.866 30 H 0.143 0.857 31 H 0.118 0.882 32 H 0.072 0.928 33 H 0.134 0.866 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.762 1.613 -11.183 15.604 hybrid contribution -0.429 -0.128 -0.206 0.493 sum -11.191 1.485 -11.388 16.036 Atomic orbital electron populations 1.21844 0.94896 1.01720 1.01450 1.20036 0.95472 0.95844 0.95673 1.21850 1.01380 0.95392 1.01421 1.19616 0.99881 0.96647 0.94182 1.20929 0.98853 0.96006 0.98053 1.21050 1.00105 1.00502 0.92164 1.21224 0.93618 0.95156 0.96993 1.18591 0.90906 0.95462 0.84287 0.93838 1.60081 1.12941 1.18930 1.44356 1.20731 1.10243 1.12731 1.11964 0.91341 1.25002 0.93431 0.97435 0.96142 1.69966 1.21018 1.40216 1.22567 0.87205 0.84793 0.81670 0.76951 1.22512 1.23181 1.11337 1.20930 0.98743 0.95781 0.98065 1.20816 1.00817 0.99620 0.92149 0.92565 0.92899 0.92733 0.91059 0.92518 0.92919 0.92514 0.87143 0.86551 0.85678 0.88169 0.92823 0.86556 0.87164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.01 37.16 0.33 -1.15 16 2 C -0.05 -0.62 3.09 -91.77 -0.28 -0.90 16 3 C -0.14 -1.61 9.01 37.16 0.33 -1.27 16 4 C -0.10 -1.57 4.78 -104.62 -0.50 -2.07 16 5 C -0.12 -1.94 9.67 -39.59 -0.38 -2.33 16 6 C -0.12 -2.22 9.67 -39.59 -0.38 -2.60 16 7 C -0.07 -1.38 4.88 -104.62 -0.51 -1.89 16 8 C 0.22 4.97 2.35 -70.02 -0.16 4.80 16 9 H 0.04 1.02 7.43 -51.93 -0.39 0.64 16 10 N -0.83 -17.15 5.65 -6.65 -0.04 -17.19 16 11 C -0.52 -14.59 9.29 -34.44 -0.32 -14.91 16 12 H 0.07 2.14 7.98 -52.49 -0.42 1.73 16 13 C 0.08 2.45 5.47 -17.82 -0.10 2.35 16 14 N -0.90 -28.13 13.96 55.43 0.77 -27.35 16 15 Si 0.87 21.76 26.94 -169.99 -4.58 17.18 16 16 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 17 H -0.30 -7.87 7.11 56.52 0.40 -7.46 16 18 H -0.19 -4.44 5.16 56.52 0.29 -4.14 16 19 C -0.12 -2.16 9.29 -39.58 -0.37 -2.53 16 20 C -0.12 -1.87 8.71 -39.58 -0.34 -2.21 16 21 H 0.06 0.59 7.39 -51.93 -0.38 0.21 16 22 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.07 0.80 7.88 -51.93 -0.41 0.39 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.64 7.39 -51.93 -0.38 0.26 16 28 H 0.11 1.51 7.95 -52.48 -0.42 1.10 16 29 H 0.12 2.06 8.04 -52.48 -0.42 1.64 16 30 H 0.33 6.54 7.33 -39.29 -0.29 6.25 16 31 H 0.31 5.48 9.06 -39.29 -0.36 5.13 16 32 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 33 H 0.12 2.10 6.65 -52.49 -0.35 1.75 16 34 H 0.11 1.54 7.10 -52.49 -0.37 1.17 16 LS Contribution 276.24 15.07 4.16 4.16 Total: -1.00 -31.02 276.24 -7.49 -38.51 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -5.12 Total: 9.40 kcal Atomic # 6 Polarization: -22.03 SS G_CDS: -2.69 Total: -24.71 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: 0.74 Total: -44.54 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.58 Total: 17.18 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.02 -7.49 -38.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071500281.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.570 kcal (2) G-P(sol) polarization free energy of solvation -31.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds