Wall clock time and date at job start Thu Apr 9 2020 14:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47156 * 2 1 4 4 C 1.50704 * 109.46779 * 119.99663 * 2 1 3 5 5 C 1.38235 * 119.99943 * 120.00116 * 4 2 1 6 6 C 1.38230 * 120.00080 * 180.02562 * 5 4 2 7 7 C 1.38235 * 120.00296 * 359.95530 * 6 5 4 8 8 C 1.50701 * 120.00138 * 180.02562 * 7 6 5 9 9 H 1.08992 * 109.47217 * 340.00362 * 8 7 6 10 10 N 1.46901 * 109.46883 * 219.99742 * 8 7 6 11 11 C 1.50699 * 109.46837 * 100.00154 * 8 7 6 12 12 H 1.08002 * 120.00511 * 0.02562 * 11 8 7 13 13 C 1.37884 * 119.99783 * 179.97438 * 11 8 7 14 14 N 1.31514 * 119.99573 * 180.27665 * 13 11 8 15 15 Si 1.86800 * 119.99781 * 359.97438 * 13 11 8 16 16 H 1.48501 * 109.46758 * 89.99934 * 15 13 11 17 17 H 1.48499 * 109.47026 * 209.99782 * 15 13 11 18 18 H 1.48496 * 109.47474 * 329.99818 * 15 13 11 19 19 C 1.38235 * 119.99778 * 0.27610 * 7 6 5 20 20 C 1.38236 * 120.00149 * 300.01826 * 4 2 1 21 21 H 1.09000 * 109.47024 * 300.00274 * 1 2 3 22 22 H 1.08996 * 109.46677 * 60.00081 * 1 2 3 23 23 H 1.08995 * 109.46871 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47024 * 239.99726 * 2 1 3 25 25 H 1.08999 * 109.47060 * 180.02562 * 3 2 1 26 26 H 1.09003 * 109.46934 * 299.99682 * 3 2 1 27 27 H 1.09000 * 109.47378 * 59.99942 * 3 2 1 28 28 H 1.08003 * 119.99873 * 359.97438 * 5 4 2 29 29 H 1.08005 * 120.00250 * 179.97438 * 6 5 4 30 30 H 1.00899 * 111.00549 * 300.00105 * 10 8 7 31 31 H 1.00907 * 110.99790 * 63.95798 * 10 8 7 32 32 H 0.97004 * 119.99485 * 179.72881 * 14 13 11 33 33 H 1.07997 * 120.00201 * 179.72563 * 19 7 6 34 34 H 1.07997 * 120.00089 * 0.02562 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 6 2.8271 -1.8343 1.1038 6 6 3.2873 -2.4862 2.2325 7 6 2.9537 -2.0137 3.4880 8 6 3.4560 -2.7241 4.7185 9 1 3.7450 -3.7421 4.4577 10 7 2.3923 -2.7611 5.7310 11 6 4.6498 -1.9888 5.2708 12 1 5.0087 -1.0961 4.7802 13 6 5.2834 -2.4552 6.4032 14 7 6.3219 -1.8104 6.8883 15 14 4.6613 -3.9980 7.2531 16 1 5.3443 -5.1868 6.6826 17 1 4.9490 -3.9122 8.7074 18 1 3.1962 -4.1214 7.0447 19 6 2.1550 -0.8926 3.6148 20 6 1.6980 -0.2383 2.4861 21 1 -0.3633 0.5139 0.8900 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 3.1301 1.4425 -0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6768 1.9564 0.8900 28 1 3.0877 -2.2036 0.1229 29 1 3.9079 -3.3646 2.1335 30 1 2.1066 -1.8286 5.9897 31 1 1.6051 -3.3041 5.4088 32 1 6.7651 -2.1363 7.6873 33 1 1.8907 -0.5260 4.5956 34 1 1.0766 0.6394 2.5851 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071500281.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:14:27 Heat of formation + Delta-G solvation = -7.617704 kcal Electronic energy + Delta-G solvation = -14517.642417 eV Core-core repulsion = 12220.821891 eV Total energy + Delta-G solvation = -2296.820527 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.56936 -37.45236 -35.27924 -33.79164 -31.71924 -30.21165 -28.16481 -27.94322 -24.70253 -23.71067 -21.91463 -20.66443 -18.92366 -17.46948 -16.81057 -16.18132 -15.94467 -15.74519 -14.94211 -14.77518 -14.41563 -14.32860 -14.06442 -13.79562 -13.35765 -13.21501 -12.95088 -12.71132 -12.31007 -12.04792 -11.99285 -11.84971 -11.49462 -11.40528 -11.31518 -10.73718 -9.72614 -9.29348 -8.87366 -8.24183 -6.37434 0.58702 0.59768 1.51052 1.57789 1.94729 2.61295 2.95841 3.14828 3.81793 3.92485 4.21580 4.24437 4.26251 4.26767 4.37344 4.59159 4.67849 4.73326 4.84090 4.98250 5.01018 5.02699 5.13200 5.28565 5.29031 5.39296 5.42729 5.54804 5.64428 5.80897 5.91646 6.13434 6.24763 6.51016 6.77755 7.04259 7.40617 8.89393 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.052229 B = 0.006797 C = 0.006601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.973942 B = 4118.595323 C = 4240.884337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.051 4.051 3 C -0.143 4.143 4 C -0.095 4.095 5 C -0.122 4.122 6 C -0.135 4.135 7 C -0.099 4.099 8 C 0.226 3.774 9 H 0.040 0.960 10 N -0.835 5.835 11 C -0.515 4.515 12 H 0.020 0.980 13 C 0.023 3.977 14 N -0.953 5.953 15 Si 0.932 3.068 16 H -0.301 1.301 17 H -0.314 1.314 18 H -0.156 1.156 19 C -0.129 4.129 20 C -0.117 4.117 21 H 0.054 0.946 22 H 0.073 0.927 23 H 0.051 0.949 24 H 0.084 0.916 25 H 0.043 0.957 26 H 0.076 0.924 27 H 0.053 0.947 28 H 0.138 0.862 29 H 0.117 0.883 30 H 0.335 0.665 31 H 0.330 0.670 32 H 0.262 0.738 33 H 0.114 0.886 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.837 1.661 -13.488 19.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.070 4.070 3 C -0.200 4.200 4 C -0.095 4.095 5 C -0.140 4.140 6 C -0.154 4.154 7 C -0.101 4.101 8 C 0.116 3.884 9 H 0.057 0.943 10 N -0.365 5.365 11 C -0.553 4.553 12 H 0.038 0.962 13 C -0.175 4.175 14 N -0.593 5.593 15 Si 0.757 3.243 16 H -0.229 1.229 17 H -0.243 1.243 18 H -0.076 1.076 19 C -0.147 4.147 20 C -0.134 4.134 21 H 0.073 0.927 22 H 0.092 0.908 23 H 0.070 0.930 24 H 0.102 0.898 25 H 0.062 0.938 26 H 0.094 0.906 27 H 0.072 0.928 28 H 0.156 0.844 29 H 0.135 0.865 30 H 0.149 0.851 31 H 0.143 0.857 32 H 0.071 0.929 33 H 0.132 0.868 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -13.218 1.312 -12.898 18.515 hybrid contribution 0.317 0.087 0.174 0.372 sum -12.900 1.399 -12.724 18.174 Atomic orbital electron populations 1.21824 0.93390 1.01921 1.02496 1.20130 0.96643 0.95911 0.94279 1.21854 1.00596 0.95065 1.02506 1.20079 0.98191 0.95887 0.95305 1.21248 0.98328 0.95990 0.98450 1.21197 1.00564 1.01094 0.92506 1.21016 0.95929 0.96641 0.96552 1.18227 0.89779 0.94629 0.85725 0.94253 1.59736 1.13437 1.19717 1.43615 1.20972 1.11967 1.11170 1.11236 0.96208 1.25959 0.93565 1.00822 0.97130 1.70117 1.23110 1.42541 1.23557 0.86271 0.86145 0.77143 0.74713 1.22857 1.24283 1.07598 1.21013 0.99028 0.95662 0.98998 1.21080 1.00599 0.99967 0.91797 0.92689 0.90775 0.92972 0.89791 0.93780 0.90557 0.92804 0.84428 0.86537 0.85119 0.85727 0.92941 0.86797 0.84860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.01 71.98 0.65 -1.73 16 2 C -0.05 -1.05 3.09 -11.54 -0.04 -1.08 16 3 C -0.14 -2.76 9.01 71.98 0.65 -2.12 16 4 C -0.09 -2.64 4.78 -19.86 -0.09 -2.73 16 5 C -0.12 -3.70 9.67 22.27 0.22 -3.49 16 6 C -0.13 -4.93 9.67 22.27 0.22 -4.72 16 7 C -0.10 -4.02 4.88 -19.87 -0.10 -4.11 16 8 C 0.23 10.35 2.35 43.42 0.10 10.45 16 9 H 0.04 1.83 7.43 -2.39 -0.02 1.81 16 10 N -0.83 -33.00 5.65 -174.96 -0.99 -33.99 16 11 C -0.52 -29.88 9.29 25.60 0.24 -29.64 16 12 H 0.02 1.30 7.98 -2.91 -0.02 1.28 16 13 C 0.02 1.39 5.47 84.66 0.46 1.86 16 14 N -0.95 -61.80 13.96 21.45 0.30 -61.50 16 15 Si 0.93 45.42 26.94 68.60 1.85 47.26 16 16 H -0.30 -14.72 7.11 99.48 0.71 -14.02 16 17 H -0.31 -15.77 7.11 99.48 0.71 -15.06 16 18 H -0.16 -6.65 5.16 99.48 0.51 -6.14 16 19 C -0.13 -4.68 9.29 22.27 0.21 -4.48 16 20 C -0.12 -3.54 8.71 22.27 0.19 -3.34 16 21 H 0.05 0.96 7.39 -2.39 -0.02 0.94 16 22 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.08 1.54 7.88 -2.39 -0.02 1.52 16 25 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.05 1.07 7.39 -2.39 -0.02 1.05 16 28 H 0.14 3.35 7.95 -2.91 -0.02 3.33 16 29 H 0.12 4.12 8.04 -2.91 -0.02 4.09 16 30 H 0.33 12.92 7.33 -89.69 -0.66 12.27 16 31 H 0.33 10.93 9.06 -89.69 -0.81 10.12 16 32 H 0.26 16.06 8.31 -92.71 -0.77 15.29 16 33 H 0.11 4.08 6.65 -2.91 -0.02 4.06 16 34 H 0.13 3.38 7.10 -2.91 -0.02 3.36 16 Total: -1.00 -68.84 276.24 3.29 -65.56 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: -0.57 Total: 27.81 kcal Atomic # 6 Polarization: -47.84 SS G_CDS: 2.70 Total: -45.13 kcal Atomic # 7 Polarization: -94.81 SS G_CDS: -0.69 Total: -95.50 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.85 Total: 47.26 kcal Total: -68.84 3.29 -65.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071500281.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.937 kcal (2) G-P(sol) polarization free energy of solvation -68.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds