Wall clock time and date at job start Thu Apr 9 2020 14:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86791 * 120.00433 * 2 1 4 4 H 1.48502 * 109.47209 * 271.90742 * 3 2 1 5 5 H 1.48500 * 109.47145 * 31.90517 * 3 2 1 6 6 H 1.48499 * 109.47028 * 151.90410 * 3 2 1 7 7 C 1.38817 * 119.99408 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00519 * 344.67518 * 7 2 1 9 9 N 1.36936 * 119.99429 * 164.67672 * 7 2 1 10 10 C 1.46504 * 119.99970 * 124.47343 * 9 7 2 11 11 C 1.50707 * 109.47081 * 89.99697 * 10 9 7 12 12 C 1.38385 * 120.00233 * 94.72291 * 11 10 9 13 13 N 1.32122 * 119.99938 * 179.77568 * 12 11 10 14 14 C 1.32160 * 119.99816 * 0.50237 * 13 12 11 15 15 C 1.38340 * 120.00164 * 359.73039 * 14 13 12 16 16 N 1.32127 * 119.99730 * 274.99856 * 11 10 9 17 17 C 1.46505 * 120.00187 * 304.46674 * 9 7 2 18 18 C 1.52995 * 117.49895 * 3.07401 * 17 9 7 19 19 C 1.52997 * 117.49959 * 294.41411 * 17 9 7 20 20 H 0.96997 * 119.99935 * 0.02562 * 1 2 3 21 21 H 1.08996 * 109.47123 * 209.99367 * 10 9 7 22 22 H 1.08996 * 109.47148 * 329.99678 * 10 9 7 23 23 H 1.08007 * 119.99752 * 0.02792 * 12 11 10 24 24 H 1.08000 * 119.99917 * 179.70886 * 14 13 12 25 25 H 1.08005 * 120.00103 * 180.02562 * 15 14 13 26 26 H 1.09003 * 115.54597 * 148.73913 * 17 9 7 27 27 H 1.09009 * 117.49376 * 359.97438 * 18 17 9 28 28 H 1.08994 * 117.50090 * 145.01435 * 18 17 9 29 29 H 1.09003 * 117.49898 * 214.97718 * 19 17 9 30 30 H 1.08999 * 117.49960 * 359.97121 * 19 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4575 2.0696 -1.3993 5 1 1.4685 2.6406 0.7400 6 1 3.5674 1.4286 0.6594 7 6 2.0101 -1.2023 -0.0005 8 1 1.4990 -2.1210 0.2462 9 7 3.3430 -1.2232 -0.3140 10 6 4.3064 -1.8085 0.6218 11 6 4.4707 -3.2761 0.3212 12 6 5.5000 -3.7035 -0.4991 13 7 5.6466 -4.9906 -0.7590 14 6 4.8042 -5.8689 -0.2436 15 6 3.7724 -5.4412 0.5726 16 7 3.6286 -4.1542 0.8365 17 6 3.8056 -0.6605 -1.5851 18 6 2.7611 0.0003 -2.4869 19 6 3.3561 -1.3567 -2.8711 20 1 -0.4850 0.8400 -0.0004 21 1 5.2677 -1.3060 0.5151 22 1 3.9431 -1.6850 1.6419 23 1 6.1859 -2.9852 -0.9236 24 1 4.9213 -6.9205 -0.4598 25 1 3.0842 -6.1590 0.9941 26 1 4.8052 -0.2261 -1.5708 27 1 1.7296 0.0158 -2.1346 28 1 3.0736 0.8690 -3.0662 29 1 4.0598 -1.3801 -3.7032 30 1 2.7165 -2.2338 -2.7715 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706770736.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:13:10 Heat of formation + Delta-G solvation = 103.906708 kcal Electronic energy + Delta-G solvation = -14744.524386 eV Core-core repulsion = 12348.999577 eV Total energy + Delta-G solvation = -2395.524809 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.56934 -37.34332 -34.15401 -33.11008 -32.15088 -30.46209 -26.54501 -24.13642 -23.87018 -21.99357 -21.59173 -19.81411 -17.16602 -16.77295 -16.54578 -15.73987 -15.10417 -14.70062 -14.14211 -13.62303 -13.39875 -12.95068 -12.25425 -12.04657 -11.93352 -11.13050 -11.05940 -10.82451 -10.68170 -10.56817 -10.41301 -9.83956 -9.54043 -9.21457 -8.89798 -8.64082 -8.39199 -6.56460 -6.02775 -3.73510 1.19979 1.59140 3.37461 3.46657 3.52930 4.09036 4.48556 4.51473 4.69376 4.82531 4.89319 4.98246 5.20436 5.32064 5.60337 5.75038 5.79391 5.83201 6.00048 6.09063 6.19755 6.46520 6.54108 6.57234 6.78608 6.97137 7.27539 7.70363 8.06692 8.27999 8.52047 8.96174 9.60829 10.05142 11.07021 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.038108 B = 0.010006 C = 0.009206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.572486 B = 2797.606960 C = 3040.703915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.885 3.115 4 H -0.270 1.270 5 H -0.304 1.304 6 H -0.270 1.270 7 C -0.281 4.281 8 H 0.075 0.925 9 N -0.561 5.561 10 C 0.191 3.809 11 C 0.091 3.909 12 C 0.048 3.952 13 N -0.446 5.446 14 C 0.022 3.978 15 C 0.048 3.952 16 N -0.419 5.419 17 C 0.104 3.896 18 C -0.194 4.194 19 C -0.212 4.212 20 H 0.265 0.735 21 H 0.060 0.940 22 H 0.080 0.920 23 H 0.161 0.839 24 H 0.159 0.841 25 H 0.161 0.839 26 H 0.091 0.909 27 H 0.120 0.880 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.766 -5.267 -0.996 11.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.713 3.287 4 H -0.196 1.196 5 H -0.232 1.232 6 H -0.195 1.195 7 C -0.410 4.410 8 H 0.093 0.907 9 N -0.280 5.280 10 C 0.064 3.936 11 C -0.053 4.053 12 C -0.113 4.113 13 N -0.160 5.160 14 C -0.138 4.138 15 C -0.112 4.112 16 N -0.134 5.134 17 C -0.003 4.003 18 C -0.232 4.232 19 C -0.253 4.253 20 H 0.075 0.925 21 H 0.079 0.921 22 H 0.099 0.901 23 H 0.178 0.822 24 H 0.177 0.823 25 H 0.178 0.822 26 H 0.108 0.892 27 H 0.138 0.862 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.582 -5.143 -0.949 10.917 hybrid contribution 0.193 0.705 -0.252 0.773 sum 9.775 -4.438 -1.200 10.803 Atomic orbital electron populations 1.69863 1.06290 1.27106 1.50180 1.25847 0.95003 0.98545 0.95174 0.86806 0.80236 0.83470 0.78227 1.19593 1.23154 1.19452 1.18599 0.82610 0.93638 1.46148 0.90702 1.43527 1.04224 1.67153 1.13080 1.19925 0.93814 0.84104 0.95767 1.23736 0.89547 0.99740 0.92237 1.23519 0.98302 0.92844 0.96606 1.68331 1.25752 1.02843 1.19110 1.23541 0.93477 1.00294 0.96457 1.23773 0.97213 0.93928 0.96297 1.68463 1.23434 1.01574 1.19965 1.21396 0.95285 1.00069 0.83536 1.23510 1.01837 0.94432 1.03380 1.23335 1.04662 0.96814 1.00460 0.92496 0.92149 0.90133 0.82201 0.82345 0.82213 0.89183 0.86163 0.90546 0.90987 0.89648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.60 13.97 55.49 0.78 -25.82 16 2 C 0.06 1.59 3.74 -17.43 -0.07 1.52 16 3 Si 0.88 21.54 24.88 -169.99 -4.23 17.31 16 4 H -0.27 -6.27 5.79 56.52 0.33 -5.94 16 5 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.28 -7.67 9.17 -15.06 -0.14 -7.81 16 8 H 0.08 2.33 8.06 -52.49 -0.42 1.90 16 9 N -0.56 -12.86 2.03 -167.02 -0.34 -13.20 16 10 C 0.19 3.72 6.04 -5.19 -0.03 3.69 16 11 C 0.09 1.68 6.37 -82.41 -0.52 1.16 16 12 C 0.05 0.80 10.86 -17.37 -0.19 0.61 16 13 N -0.45 -7.22 10.50 -13.06 -0.14 -7.36 16 14 C 0.02 0.31 11.22 -17.37 -0.20 0.12 16 15 C 0.05 0.74 11.22 -17.37 -0.20 0.54 16 16 N -0.42 -8.08 10.42 -9.28 -0.10 -8.17 16 17 C 0.10 2.17 5.16 -67.93 -0.35 1.82 16 18 C -0.19 -4.20 6.69 -26.70 -0.18 -4.38 16 19 C -0.21 -4.26 10.36 -26.70 -0.28 -4.54 16 20 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 21 H 0.06 0.98 7.98 -51.93 -0.41 0.56 16 22 H 0.08 1.64 8.04 -51.93 -0.42 1.23 16 23 H 0.16 2.23 8.06 -52.48 -0.42 1.81 16 24 H 0.16 1.64 8.06 -52.49 -0.42 1.22 16 25 H 0.16 1.92 8.06 -52.48 -0.42 1.50 16 26 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 27 H 0.12 3.05 5.08 -51.92 -0.26 2.79 16 28 H 0.08 1.50 7.85 -51.93 -0.41 1.09 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.08 1.92 8.14 -51.93 -0.42 1.49 16 LS Contribution 256.57 15.07 3.87 3.87 Total: -1.00 -31.09 256.57 -5.98 -37.07 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -3.67 Total: 3.58 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -2.14 Total: -7.27 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: 0.20 Total: -54.56 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.23 Total: 17.31 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -31.09 -5.98 -37.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706770736.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.973 kcal (2) G-P(sol) polarization free energy of solvation -31.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds