Wall clock time and date at job start Thu Apr 9 2020 14:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86791 * 120.00433 * 2 1 4 4 H 1.48502 * 109.47209 * 271.90742 * 3 2 1 5 5 H 1.48500 * 109.47145 * 31.90517 * 3 2 1 6 6 H 1.48499 * 109.47028 * 151.90410 * 3 2 1 7 7 C 1.38817 * 119.99408 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00519 * 344.67518 * 7 2 1 9 9 N 1.36936 * 119.99429 * 164.67672 * 7 2 1 10 10 C 1.46504 * 119.99970 * 124.47343 * 9 7 2 11 11 C 1.50707 * 109.47081 * 89.99697 * 10 9 7 12 12 C 1.38385 * 120.00233 * 94.72291 * 11 10 9 13 13 N 1.32122 * 119.99938 * 179.77568 * 12 11 10 14 14 C 1.32160 * 119.99816 * 0.50237 * 13 12 11 15 15 C 1.38340 * 120.00164 * 359.73039 * 14 13 12 16 16 N 1.32127 * 119.99730 * 274.99856 * 11 10 9 17 17 C 1.46505 * 120.00187 * 304.46674 * 9 7 2 18 18 C 1.52995 * 117.49895 * 3.07401 * 17 9 7 19 19 C 1.52997 * 117.49959 * 294.41411 * 17 9 7 20 20 H 0.96997 * 119.99935 * 0.02562 * 1 2 3 21 21 H 1.08996 * 109.47123 * 209.99367 * 10 9 7 22 22 H 1.08996 * 109.47148 * 329.99678 * 10 9 7 23 23 H 1.08007 * 119.99752 * 0.02792 * 12 11 10 24 24 H 1.08000 * 119.99917 * 179.70886 * 14 13 12 25 25 H 1.08005 * 120.00103 * 180.02562 * 15 14 13 26 26 H 1.09003 * 115.54597 * 148.73913 * 17 9 7 27 27 H 1.09009 * 117.49376 * 359.97438 * 18 17 9 28 28 H 1.08994 * 117.50090 * 145.01435 * 18 17 9 29 29 H 1.09003 * 117.49898 * 214.97718 * 19 17 9 30 30 H 1.08999 * 117.49960 * 359.97121 * 19 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4575 2.0696 -1.3993 5 1 1.4685 2.6406 0.7400 6 1 3.5674 1.4286 0.6594 7 6 2.0101 -1.2023 -0.0005 8 1 1.4990 -2.1210 0.2462 9 7 3.3430 -1.2232 -0.3140 10 6 4.3064 -1.8085 0.6218 11 6 4.4707 -3.2761 0.3212 12 6 5.5000 -3.7035 -0.4991 13 7 5.6466 -4.9906 -0.7590 14 6 4.8042 -5.8689 -0.2436 15 6 3.7724 -5.4412 0.5726 16 7 3.6286 -4.1542 0.8365 17 6 3.8056 -0.6605 -1.5851 18 6 2.7611 0.0003 -2.4869 19 6 3.3561 -1.3567 -2.8711 20 1 -0.4850 0.8400 -0.0004 21 1 5.2677 -1.3060 0.5151 22 1 3.9431 -1.6850 1.6419 23 1 6.1859 -2.9852 -0.9236 24 1 4.9213 -6.9205 -0.4598 25 1 3.0842 -6.1590 0.9941 26 1 4.8052 -0.2261 -1.5708 27 1 1.7296 0.0158 -2.1346 28 1 3.0736 0.8690 -3.0662 29 1 4.0598 -1.3801 -3.7032 30 1 2.7165 -2.2338 -2.7715 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706770736.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:13:10 Heat of formation + Delta-G solvation = 82.033593 kcal Electronic energy + Delta-G solvation = -14745.472875 eV Core-core repulsion = 12348.999577 eV Total energy + Delta-G solvation = -2396.473298 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.83269 -39.03963 -35.55050 -34.65440 -34.04553 -32.00570 -28.17138 -25.68099 -25.37246 -23.40743 -23.24102 -21.60341 -18.84921 -18.30674 -17.76770 -17.18468 -16.73548 -16.41708 -15.55589 -15.34822 -14.99404 -14.46733 -13.91781 -13.65596 -13.54707 -12.82605 -12.59476 -12.45541 -12.21994 -12.13311 -12.03088 -11.78463 -11.34759 -10.88927 -10.53210 -10.08267 -9.90814 -8.42665 -8.12935 -5.86501 -0.02791 0.32320 1.45812 1.48997 1.61759 2.48927 2.78758 3.02130 3.27647 3.34622 3.42688 3.50323 3.72952 4.08695 4.23756 4.29428 4.35663 4.43421 4.58079 4.67300 4.80370 4.90015 4.97807 5.03770 5.29759 5.54010 5.56831 5.99205 6.34106 6.47961 7.01224 7.10101 7.56065 8.04113 8.98174 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.038108 B = 0.010006 C = 0.009206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.572486 B = 2797.606960 C = 3040.703915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.008 3.992 3 Si 0.949 3.051 4 H -0.247 1.247 5 H -0.317 1.317 6 H -0.253 1.253 7 C -0.269 4.269 8 H 0.016 0.984 9 N -0.573 5.573 10 C 0.190 3.810 11 C 0.066 3.934 12 C 0.053 3.947 13 N -0.458 5.458 14 C 0.037 3.963 15 C 0.037 3.963 16 N -0.466 5.466 17 C 0.103 3.897 18 C -0.210 4.210 19 C -0.197 4.197 20 H 0.264 0.736 21 H 0.103 0.897 22 H 0.058 0.942 23 H 0.188 0.812 24 H 0.202 0.798 25 H 0.187 0.813 26 H 0.136 0.864 27 H 0.077 0.923 28 H 0.104 0.896 29 H 0.112 0.888 30 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.964 -5.178 -2.155 14.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.190 4.190 3 Si 0.774 3.226 4 H -0.172 1.172 5 H -0.246 1.246 6 H -0.177 1.177 7 C -0.398 4.398 8 H 0.034 0.966 9 N -0.293 5.293 10 C 0.064 3.936 11 C -0.076 4.076 12 C -0.107 4.107 13 N -0.173 5.173 14 C -0.123 4.123 15 C -0.123 4.123 16 N -0.182 5.182 17 C -0.004 4.004 18 C -0.248 4.248 19 C -0.237 4.237 20 H 0.073 0.927 21 H 0.121 0.879 22 H 0.076 0.924 23 H 0.205 0.795 24 H 0.219 0.781 25 H 0.204 0.796 26 H 0.153 0.847 27 H 0.095 0.905 28 H 0.123 0.877 29 H 0.130 0.870 30 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 12.829 -5.068 -2.118 13.955 hybrid contribution -0.837 0.441 0.106 0.952 sum 11.992 -4.627 -2.012 13.010 Atomic orbital electron populations 1.70009 1.08354 1.27826 1.52905 1.26491 0.95435 1.02114 0.94959 0.85780 0.79097 0.78432 0.79277 1.17157 1.24580 1.17667 1.18175 0.84806 0.91526 1.45329 0.96618 1.43577 1.03041 1.67831 1.14804 1.20016 0.94494 0.85234 0.93874 1.23525 0.90930 0.99071 0.94065 1.23804 0.97740 0.93597 0.95538 1.68452 1.26311 1.02931 1.19559 1.24202 0.91805 1.01971 0.94331 1.24289 0.98263 0.93066 0.96634 1.68358 1.24760 1.03556 1.21572 1.21759 0.96605 0.99686 0.82313 1.23435 0.99958 0.96442 1.04923 1.23252 1.04285 0.94510 1.01679 0.92707 0.87935 0.92393 0.79509 0.78123 0.79577 0.84701 0.90492 0.87732 0.87003 0.93245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.19 13.97 21.65 0.30 -58.89 16 2 C 0.01 0.45 3.74 84.86 0.32 0.77 16 3 Si 0.95 44.36 24.88 68.60 1.71 46.07 16 4 H -0.25 -10.55 5.79 99.48 0.58 -9.98 16 5 H -0.32 -15.40 7.11 99.48 0.71 -14.70 16 6 H -0.25 -11.04 7.11 99.48 0.71 -10.33 16 7 C -0.27 -15.21 9.17 84.03 0.77 -14.44 16 8 H 0.02 1.08 8.06 -2.91 -0.02 1.05 16 9 N -0.57 -25.84 2.03 -682.33 -1.39 -27.23 16 10 C 0.19 7.18 6.04 85.63 0.52 7.69 16 11 C 0.07 2.40 6.37 42.55 0.27 2.67 16 12 C 0.05 1.60 10.86 84.68 0.92 2.52 16 13 N -0.46 -13.48 10.50 -195.22 -2.05 -15.53 16 14 C 0.04 0.94 11.22 84.67 0.95 1.89 16 15 C 0.04 1.11 11.22 84.67 0.95 2.06 16 16 N -0.47 -18.13 10.42 -183.28 -1.91 -20.04 16 17 C 0.10 3.95 5.16 44.99 0.23 4.19 16 18 C -0.21 -8.65 6.69 30.62 0.20 -8.45 16 19 C -0.20 -7.44 10.36 30.62 0.32 -7.13 16 20 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 21 H 0.10 2.95 7.98 -2.39 -0.02 2.93 16 22 H 0.06 2.40 8.04 -2.39 -0.02 2.38 16 23 H 0.19 4.43 8.06 -2.91 -0.02 4.41 16 24 H 0.20 3.30 8.06 -2.91 -0.02 3.27 16 25 H 0.19 4.23 8.06 -2.91 -0.02 4.21 16 26 H 0.14 4.06 8.14 -2.39 -0.02 4.04 16 27 H 0.08 3.93 5.08 -2.38 -0.01 3.92 16 28 H 0.10 3.69 7.85 -2.39 -0.02 3.68 16 29 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 30 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -71.74 256.57 3.11 -68.63 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 1.00 Total: 15.20 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: 5.45 Total: -8.22 kcal Atomic # 7 Polarization: -116.63 SS G_CDS: -5.04 Total: -121.68 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.71 Total: 46.07 kcal Total: -71.74 3.11 -68.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706770736.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.661 kcal (2) G-P(sol) polarization free energy of solvation -71.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds