Wall clock time and date at job start Thu Apr 9 2020 14:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42895 * 109.47070 * 2 1 4 4 C 1.35173 * 117.00160 * 180.02562 * 3 2 1 5 5 N 1.32517 * 119.99852 * 0.02562 * 4 3 2 6 6 C 1.32775 * 119.99562 * 172.85634 * 5 4 3 7 7 H 1.07994 * 120.00578 * 346.55848 * 6 5 4 8 8 C 1.40529 * 119.99820 * 166.56097 * 6 5 4 9 9 N 1.30717 * 119.99891 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00089 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47286 * 90.00286 * 10 8 6 12 12 H 1.48503 * 109.46884 * 209.99713 * 10 8 6 13 13 H 1.48496 * 109.47506 * 329.99858 * 10 8 6 14 14 C 1.46979 * 120.00222 * 180.02562 * 4 3 2 15 15 C 1.40072 * 120.19124 * 139.12463 * 14 4 3 16 16 C 1.37802 * 119.80821 * 180.02562 * 15 14 4 17 17 C 1.38479 * 120.18995 * 359.97438 * 16 15 14 18 18 C 1.38469 * 120.38793 * 0.29480 * 17 16 15 19 19 C 1.37817 * 120.18495 * 359.44564 * 18 17 16 20 20 H 1.08991 * 109.47385 * 59.99359 * 1 2 3 21 21 H 1.09006 * 109.46906 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46727 * 299.99009 * 1 2 3 23 23 H 1.09000 * 109.46727 * 240.00991 * 2 1 3 24 24 H 1.08991 * 109.47385 * 120.00641 * 2 1 3 25 25 H 0.97000 * 120.00057 * 180.02562 * 9 8 6 26 26 H 1.08004 * 120.09228 * 0.04763 * 15 14 4 27 27 H 1.07997 * 119.90545 * 179.97438 * 16 15 14 28 28 H 1.08004 * 119.80842 * 180.02562 * 17 16 15 29 29 H 1.07998 * 119.90721 * 179.72590 * 18 17 16 30 30 H 1.08000 * 120.09781 * 180.25211 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3464 1.5244 -0.0005 5 7 4.1537 0.4735 -0.0015 6 6 5.4628 0.6422 -0.1451 7 1 5.8517 1.5941 -0.4751 8 6 6.3425 -0.4180 0.1324 9 7 5.8719 -1.5701 0.5324 10 14 8.1842 -0.1809 -0.0701 11 1 8.7641 0.3064 1.2072 12 1 8.8125 -1.4755 -0.4368 13 1 8.4403 0.8147 -1.1417 14 6 3.9082 2.8826 0.0000 15 6 5.0238 3.1831 0.7920 16 6 5.5437 4.4593 0.7868 17 6 4.9669 5.4431 0.0014 18 6 3.8605 5.1562 -0.7803 19 6 3.3309 3.8839 -0.7913 20 1 -0.3634 0.5139 -0.8898 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5137 0.8901 23 1 1.8933 -0.5137 -0.8901 24 1 1.8934 -0.5139 0.8898 25 1 6.4791 -2.3018 0.7243 26 1 5.4753 2.4167 1.4045 27 1 6.4035 4.6928 1.3972 28 1 5.3796 6.4411 0.0017 29 1 3.4141 5.9306 -1.3866 30 1 2.4704 3.6607 -1.4046 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714559923.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:13:12 Heat of formation + Delta-G solvation = -7.065899 kcal Electronic energy + Delta-G solvation = -14326.235859 eV Core-core repulsion = 11893.606166 eV Total energy + Delta-G solvation = -2432.629693 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.47454 -36.98875 -34.75445 -32.40443 -30.57967 -29.91370 -29.37849 -25.25635 -22.90132 -21.57251 -21.37971 -19.61602 -17.30251 -16.26104 -15.75044 -14.90119 -14.78475 -14.39970 -13.73906 -13.35060 -12.65664 -12.58989 -12.55542 -11.93261 -11.72821 -11.67509 -11.52352 -11.32860 -10.72571 -10.56790 -10.37069 -10.21115 -10.16691 -9.53788 -8.32699 -8.13364 -7.83774 -7.42897 -7.04516 -4.16423 2.05328 2.28734 2.85569 2.95034 3.00833 3.71983 3.76627 4.56420 4.80667 5.46252 5.65716 5.75399 5.79836 5.84730 5.92160 6.06090 6.33034 6.38192 6.43223 6.59889 6.70684 6.76676 6.81144 6.90975 7.02518 7.14915 7.31717 7.46433 7.61228 7.80847 7.98077 8.46530 9.39773 9.84569 10.44966 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.017419 B = 0.013362 C = 0.007887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.033648 B = 2094.962152 C = 3549.368476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.083 3.917 3 O -0.326 6.326 4 C 0.018 3.982 5 N -0.368 5.368 6 C -0.257 4.257 7 H 0.071 0.929 8 C 0.069 3.931 9 N -0.752 5.752 10 Si 0.924 3.076 11 H -0.263 1.263 12 H -0.271 1.271 13 H -0.255 1.255 14 C 0.029 3.971 15 C -0.117 4.117 16 C -0.123 4.123 17 C -0.164 4.164 18 C -0.122 4.122 19 C -0.135 4.135 20 H 0.054 0.946 21 H 0.063 0.937 22 H 0.055 0.945 23 H 0.044 0.956 24 H 0.048 0.952 25 H 0.284 0.716 26 H 0.125 0.875 27 H 0.109 0.891 28 H 0.105 0.895 29 H 0.107 0.893 30 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.441 4.677 -0.435 4.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.006 3.994 3 O -0.237 6.237 4 C -0.177 4.177 5 N -0.090 5.090 6 C -0.410 4.410 7 H 0.089 0.911 8 C -0.155 4.155 9 N -0.376 5.376 10 Si 0.747 3.253 11 H -0.188 1.188 12 H -0.196 1.196 13 H -0.179 1.179 14 C 0.026 3.974 15 C -0.136 4.136 16 C -0.141 4.141 17 C -0.183 4.183 18 C -0.140 4.140 19 C -0.155 4.155 20 H 0.073 0.927 21 H 0.082 0.918 22 H 0.074 0.926 23 H 0.062 0.938 24 H 0.066 0.934 25 H 0.095 0.905 26 H 0.143 0.857 27 H 0.127 0.873 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.791 3.713 -0.289 3.808 hybrid contribution 1.225 0.502 -0.189 1.338 sum 0.435 4.215 -0.478 4.265 Atomic orbital electron populations 1.21770 0.95546 1.01184 1.02003 1.21959 0.92097 0.84270 1.01027 1.85673 1.19066 1.26563 1.92384 1.20044 0.82624 0.87450 1.27610 1.67147 1.06069 1.30240 1.05504 1.20470 0.88457 0.97318 1.34796 0.91133 1.26328 1.02230 0.93859 0.93097 1.69696 1.38302 1.01960 1.27668 0.85978 0.79788 0.79245 0.80313 1.18791 1.19607 1.17878 1.18698 0.93657 0.91643 0.93369 1.21304 0.97651 0.96001 0.98675 1.20855 0.99917 0.93363 0.99953 1.20860 0.98291 0.98478 1.00677 1.20857 0.96979 0.96386 0.99808 1.21314 1.01078 0.93097 1.00012 0.92695 0.91845 0.92611 0.93810 0.93369 0.90479 0.85742 0.87271 0.87673 0.87540 0.86899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 10.28 37.16 0.38 -2.08 16 2 C 0.08 1.82 6.03 37.16 0.22 2.05 16 3 O -0.33 -8.15 10.01 -17.22 -0.17 -8.32 16 4 C 0.02 0.49 7.35 -13.72 -0.10 0.39 16 5 N -0.37 -10.39 8.93 -10.40 -0.09 -10.48 16 6 C -0.26 -6.92 7.69 -16.28 -0.13 -7.05 16 7 H 0.07 1.88 5.47 -52.49 -0.29 1.60 16 8 C 0.07 1.72 5.53 -17.16 -0.09 1.62 16 9 N -0.75 -19.51 13.59 55.58 0.76 -18.75 16 10 Si 0.92 18.31 29.57 -169.99 -5.03 13.28 16 11 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 12 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 13 H -0.26 -5.05 7.11 56.52 0.40 -4.64 16 14 C 0.03 0.71 5.07 -104.98 -0.53 0.18 16 15 C -0.12 -2.62 7.59 -39.05 -0.30 -2.92 16 16 C -0.12 -2.35 10.03 -39.65 -0.40 -2.74 16 17 C -0.16 -2.92 10.04 -39.41 -0.40 -3.32 16 18 C -0.12 -2.25 10.03 -39.65 -0.40 -2.65 16 19 C -0.13 -2.89 9.70 -39.05 -0.38 -3.27 16 20 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 21 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 22 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.04 1.01 8.11 -51.93 -0.42 0.59 16 24 H 0.05 1.12 8.11 -51.93 -0.42 0.70 16 25 H 0.28 6.53 8.29 -40.82 -0.34 6.19 16 26 H 0.12 2.93 6.74 -52.48 -0.35 2.58 16 27 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 28 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 29 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 30 H 0.11 2.33 8.06 -52.49 -0.42 1.91 16 LS Contribution 266.12 15.07 4.01 4.01 Total: -1.00 -29.27 266.12 -6.22 -35.49 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -3.58 Total: 4.56 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: -2.11 Total: -19.79 kcal Atomic # 7 Polarization: -29.89 SS G_CDS: 0.66 Total: -29.23 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: -0.17 Total: -8.32 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.03 Total: 13.28 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.27 -6.22 -35.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714559923.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.420 kcal (2) G-P(sol) polarization free energy of solvation -29.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds