Wall clock time and date at job start Thu Apr 9 2020 14:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99920 * 2 1 4 4 H 1.48502 * 109.47267 * 274.41682 * 3 2 1 5 5 H 1.48497 * 109.47074 * 34.41772 * 3 2 1 6 6 H 1.48501 * 109.47069 * 154.41756 * 3 2 1 7 7 C 1.38814 * 120.00104 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00129 * 161.21510 * 7 2 1 9 9 N 1.36935 * 119.99993 * 341.21885 * 7 2 1 10 10 C 1.47238 * 121.36744 * 333.60646 * 9 7 2 11 11 C 1.52774 * 107.94261 * 115.85519 * 10 9 7 12 12 C 1.50700 * 110.85214 * 47.64303 * 11 10 9 13 13 N 1.32926 * 117.38762 * 160.13801 * 12 11 10 14 14 C 1.31603 * 122.64360 * 179.21218 * 13 12 11 15 15 C 1.37931 * 120.75018 * 0.13112 * 14 13 12 16 16 C 1.39264 * 118.68382 * 0.19635 * 15 14 13 17 17 N 1.39165 * 120.66289 * 179.78683 * 16 15 14 18 18 C 1.37291 * 122.65040 * 339.80102 * 12 11 10 19 19 C 1.46724 * 121.37413 * 153.58322 * 9 7 2 20 20 H 0.97004 * 120.00146 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.76840 * 235.46215 * 10 9 7 22 22 H 1.08993 * 109.77398 * 356.18745 * 10 9 7 23 23 H 1.08997 * 109.20670 * 167.99851 * 11 10 9 24 24 H 1.09003 * 109.19922 * 287.29210 * 11 10 9 25 25 H 1.07997 * 119.62114 * 180.41090 * 14 13 12 26 26 H 1.08001 * 120.65315 * 180.22300 * 15 14 13 27 27 H 0.96999 * 120.00323 * 359.97438 * 17 16 15 28 28 H 0.97000 * 119.99850 * 180.02562 * 17 16 15 29 29 H 1.09000 * 109.43711 * 104.00249 * 19 9 7 30 30 H 1.08995 * 109.43981 * 344.11769 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4043 2.1004 -1.3959 5 1 1.4974 2.6239 0.7913 6 1 3.5913 1.4151 0.6046 7 6 2.0102 -1.2021 -0.0005 8 1 3.0470 -1.2269 -0.3017 9 7 1.3803 -2.3567 0.3807 10 6 0.2342 -2.3351 1.3048 11 6 -0.9897 -2.8495 0.5488 12 6 -0.6660 -4.1194 -0.1951 13 7 -1.6848 -4.8936 -0.5554 14 6 -1.5218 -6.0169 -1.2215 15 6 -0.2615 -6.4484 -1.5789 16 6 0.8378 -5.6736 -1.2174 17 7 2.1282 -6.0722 -1.5530 18 6 0.6189 -4.4867 -0.5096 19 6 1.8192 -3.6660 -0.1151 20 1 -0.4850 0.8401 0.0004 21 1 0.4375 -2.9804 2.1595 22 1 0.0555 -1.3158 1.6470 23 1 -1.7936 -3.0447 1.2585 24 1 -1.3167 -2.0908 -0.1623 25 1 -2.3852 -6.6052 -1.4952 26 1 -0.1299 -7.3686 -2.1287 27 1 2.2690 -6.8973 -2.0432 28 1 2.8870 -5.5254 -1.2959 29 1 2.3714 -4.1842 0.6689 30 1 2.4650 -3.5276 -0.9822 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931510230.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:13:43 Heat of formation + Delta-G solvation = 55.941914 kcal Electronic energy + Delta-G solvation = -14825.066531 eV Core-core repulsion = 12427.461812 eV Total energy + Delta-G solvation = -2397.604718 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.84506 -36.08830 -35.16535 -32.26761 -30.55336 -29.51628 -28.79524 -25.59662 -23.26055 -22.53231 -21.23528 -19.40485 -17.41881 -16.70516 -15.98472 -15.15485 -14.61055 -14.18363 -14.06938 -13.43053 -13.34327 -13.22670 -12.51533 -12.22325 -11.44348 -11.25227 -11.21462 -10.79590 -10.73399 -10.64025 -10.14902 -9.84244 -9.57311 -8.70906 -8.51985 -8.03041 -7.49930 -6.71734 -5.82037 -3.24635 1.86266 2.13240 3.36545 3.44192 3.46386 4.06855 4.46788 4.50855 5.04886 5.28156 5.35773 5.43006 5.70868 5.81661 6.07494 6.17952 6.40450 6.43890 6.51341 6.59513 6.73097 6.79105 7.09029 7.25016 7.51636 7.60136 7.71671 7.79433 7.93747 8.38952 8.84754 9.15613 9.78120 10.37823 11.25835 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.042794 B = 0.009222 C = 0.008108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.143265 B = 3035.414909 C = 3452.567161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.004 3.996 3 Si 0.904 3.096 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.067 0.933 9 N -0.589 5.589 10 C 0.164 3.836 11 C -0.080 4.080 12 C 0.193 3.807 13 N -0.539 5.539 14 C 0.130 3.870 15 C -0.275 4.275 16 C 0.244 3.756 17 N -0.868 5.868 18 C -0.208 4.208 19 C 0.193 3.807 20 H 0.255 0.745 21 H 0.007 0.993 22 H 0.099 0.901 23 H 0.059 0.941 24 H 0.106 0.894 25 H 0.143 0.857 26 H 0.120 0.880 27 H 0.395 0.605 28 H 0.401 0.599 29 H 0.026 0.974 30 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.624 -10.228 -1.346 10.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.195 4.195 3 Si 0.733 3.267 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.383 4.383 8 H 0.085 0.915 9 N -0.311 5.311 10 C 0.038 3.962 11 C -0.119 4.119 12 C 0.060 3.940 13 N -0.252 5.252 14 C -0.030 4.030 15 C -0.301 4.301 16 C 0.131 3.869 17 N -0.408 5.408 18 C -0.216 4.216 19 C 0.065 3.935 20 H 0.065 0.935 21 H 0.025 0.975 22 H 0.117 0.883 23 H 0.077 0.923 24 H 0.124 0.876 25 H 0.160 0.840 26 H 0.138 0.862 27 H 0.223 0.777 28 H 0.230 0.770 29 H 0.043 0.957 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.672 -9.747 -1.094 9.831 hybrid contribution 1.509 0.247 -0.673 1.670 sum 2.181 -9.500 -1.767 9.906 Atomic orbital electron populations 1.69977 1.05221 1.25589 1.53134 1.25013 0.95289 0.98411 1.00748 0.86268 0.79237 0.83597 0.77560 1.21546 1.21458 1.20445 1.19116 0.93160 0.84670 1.41387 0.91482 1.44102 1.36317 1.00634 1.50093 1.20849 0.85061 1.00936 0.89343 1.20917 0.99689 0.91876 0.99460 1.21101 0.87062 0.94117 0.91687 1.67673 1.35654 1.06268 1.15560 1.22177 0.95299 0.92536 0.92991 1.21325 0.93230 1.03446 1.12139 1.17976 0.85558 0.92066 0.91315 1.42346 1.04939 1.28441 1.65091 1.20827 0.98546 0.96733 1.05531 1.19623 0.91330 0.86624 0.95875 0.93488 0.97512 0.88322 0.92261 0.87601 0.83999 0.86217 0.77742 0.76976 0.95675 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.10 10.16 55.49 0.56 -24.53 16 2 C 0.00 0.12 4.93 -17.43 -0.09 0.03 16 3 Si 0.90 21.30 29.59 -169.99 -5.03 16.27 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.25 -6.89 9.68 -15.06 -0.15 -7.03 16 8 H 0.07 1.77 7.90 -52.49 -0.41 1.36 16 9 N -0.59 -14.89 2.96 -174.00 -0.52 -15.41 16 10 C 0.16 3.98 5.59 -3.75 -0.02 3.96 16 11 C -0.08 -1.86 6.01 -28.00 -0.17 -2.03 16 12 C 0.19 4.31 6.64 -82.46 -0.55 3.77 16 13 N -0.54 -11.24 10.18 -9.60 -0.10 -11.34 16 14 C 0.13 2.24 11.18 -17.76 -0.20 2.04 16 15 C -0.28 -4.37 10.00 -39.31 -0.39 -4.77 16 16 C 0.24 4.21 6.77 -83.52 -0.57 3.65 16 17 N -0.87 -11.32 8.98 32.58 0.29 -11.03 16 18 C -0.21 -4.35 5.83 -104.36 -0.61 -4.96 16 19 C 0.19 4.14 5.35 -5.09 -0.03 4.11 16 20 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 21 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 22 H 0.10 2.59 5.92 -51.93 -0.31 2.28 16 23 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 24 H 0.11 2.77 7.16 -51.93 -0.37 2.40 16 25 H 0.14 1.93 8.06 -52.49 -0.42 1.51 16 26 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 27 H 0.39 3.91 8.85 -40.82 -0.36 3.54 16 28 H 0.40 5.01 7.18 -40.82 -0.29 4.72 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 1.17 7.32 -51.93 -0.38 0.79 16 LS Contribution 248.36 15.07 3.74 3.74 Total: -1.00 -30.35 248.36 -7.18 -37.53 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -3.38 Total: 6.00 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -2.76 Total: -1.23 kcal Atomic # 7 Polarization: -62.55 SS G_CDS: 0.24 Total: -62.31 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -30.35 -7.18 -37.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931510230.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.472 kcal (2) G-P(sol) polarization free energy of solvation -30.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds