Wall clock time and date at job start Thu Apr 9 2020 14:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99920 * 2 1 4 4 H 1.48502 * 109.47267 * 274.41682 * 3 2 1 5 5 H 1.48497 * 109.47074 * 34.41772 * 3 2 1 6 6 H 1.48501 * 109.47069 * 154.41756 * 3 2 1 7 7 C 1.38814 * 120.00104 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00129 * 161.21510 * 7 2 1 9 9 N 1.36935 * 119.99993 * 341.21885 * 7 2 1 10 10 C 1.47238 * 121.36744 * 333.60646 * 9 7 2 11 11 C 1.52774 * 107.94261 * 115.85519 * 10 9 7 12 12 C 1.50700 * 110.85214 * 47.64303 * 11 10 9 13 13 N 1.32926 * 117.38762 * 160.13801 * 12 11 10 14 14 C 1.31603 * 122.64360 * 179.21218 * 13 12 11 15 15 C 1.37931 * 120.75018 * 0.13112 * 14 13 12 16 16 C 1.39264 * 118.68382 * 0.19635 * 15 14 13 17 17 N 1.39165 * 120.66289 * 179.78683 * 16 15 14 18 18 C 1.37291 * 122.65040 * 339.80102 * 12 11 10 19 19 C 1.46724 * 121.37413 * 153.58322 * 9 7 2 20 20 H 0.97004 * 120.00146 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.76840 * 235.46215 * 10 9 7 22 22 H 1.08993 * 109.77398 * 356.18745 * 10 9 7 23 23 H 1.08997 * 109.20670 * 167.99851 * 11 10 9 24 24 H 1.09003 * 109.19922 * 287.29210 * 11 10 9 25 25 H 1.07997 * 119.62114 * 180.41090 * 14 13 12 26 26 H 1.08001 * 120.65315 * 180.22300 * 15 14 13 27 27 H 0.96999 * 120.00323 * 359.97438 * 17 16 15 28 28 H 0.97000 * 119.99850 * 180.02562 * 17 16 15 29 29 H 1.09000 * 109.43711 * 104.00249 * 19 9 7 30 30 H 1.08995 * 109.43981 * 344.11769 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4043 2.1004 -1.3959 5 1 1.4974 2.6239 0.7913 6 1 3.5913 1.4151 0.6046 7 6 2.0102 -1.2021 -0.0005 8 1 3.0470 -1.2269 -0.3017 9 7 1.3803 -2.3567 0.3807 10 6 0.2342 -2.3351 1.3048 11 6 -0.9897 -2.8495 0.5488 12 6 -0.6660 -4.1194 -0.1951 13 7 -1.6848 -4.8936 -0.5554 14 6 -1.5218 -6.0169 -1.2215 15 6 -0.2615 -6.4484 -1.5789 16 6 0.8378 -5.6736 -1.2174 17 7 2.1282 -6.0722 -1.5530 18 6 0.6189 -4.4867 -0.5096 19 6 1.8192 -3.6660 -0.1151 20 1 -0.4850 0.8401 0.0004 21 1 0.4375 -2.9804 2.1595 22 1 0.0555 -1.3158 1.6470 23 1 -1.7936 -3.0447 1.2585 24 1 -1.3167 -2.0908 -0.1623 25 1 -2.3852 -6.6052 -1.4952 26 1 -0.1299 -7.3686 -2.1287 27 1 2.2690 -6.8973 -2.0432 28 1 2.8870 -5.5254 -1.2959 29 1 2.3714 -4.1842 0.6689 30 1 2.4650 -3.5276 -0.9822 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931510230.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:13:43 Heat of formation + Delta-G solvation = 34.940770 kcal Electronic energy + Delta-G solvation = -14825.977208 eV Core-core repulsion = 12427.461812 eV Total energy + Delta-G solvation = -2398.515396 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.30494 -37.86929 -36.48437 -34.14018 -32.24717 -31.18031 -30.24792 -27.40896 -24.97408 -24.25036 -22.71417 -21.11471 -19.01502 -18.18210 -17.52803 -16.94465 -16.01692 -15.86349 -15.61197 -15.19719 -14.99665 -14.74653 -14.17329 -13.83375 -13.35040 -12.91403 -12.89378 -12.63977 -12.43671 -12.23698 -12.02510 -11.72692 -11.41927 -10.54747 -10.16773 -9.52718 -8.81852 -8.66440 -7.85835 -5.31880 0.42132 0.73999 1.48750 1.51134 1.60844 2.52115 2.92795 3.05835 3.28519 3.54699 3.72892 3.98845 4.18434 4.35966 4.57792 4.72154 4.76966 4.86928 4.92071 4.93827 5.03763 5.16154 5.46289 5.54003 5.58787 5.75922 5.94136 6.37799 6.45995 6.95708 7.12455 7.40409 7.80315 8.38018 9.19907 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.042794 B = 0.009222 C = 0.008108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.143265 B = 3035.414909 C = 3452.567161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.045 4.045 3 Si 0.968 3.032 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.270 1.270 7 C -0.269 4.269 8 H 0.071 0.929 9 N -0.607 5.607 10 C 0.169 3.831 11 C -0.067 4.067 12 C 0.163 3.837 13 N -0.567 5.567 14 C 0.125 3.875 15 C -0.263 4.263 16 C 0.248 3.752 17 N -0.848 5.848 18 C -0.235 4.235 19 C 0.196 3.804 20 H 0.251 0.749 21 H 0.018 0.982 22 H 0.072 0.928 23 H 0.065 0.935 24 H 0.067 0.933 25 H 0.180 0.820 26 H 0.164 0.836 27 H 0.414 0.586 28 H 0.405 0.595 29 H 0.039 0.961 30 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.617 -12.304 -2.308 12.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.241 4.241 3 Si 0.796 3.204 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.194 1.194 7 C -0.398 4.398 8 H 0.088 0.912 9 N -0.330 5.330 10 C 0.043 3.957 11 C -0.107 4.107 12 C 0.030 3.970 13 N -0.281 5.281 14 C -0.034 4.034 15 C -0.289 4.289 16 C 0.133 3.867 17 N -0.389 5.389 18 C -0.243 4.243 19 C 0.069 3.931 20 H 0.060 0.940 21 H 0.036 0.964 22 H 0.090 0.910 23 H 0.083 0.917 24 H 0.086 0.914 25 H 0.197 0.803 26 H 0.181 0.819 27 H 0.245 0.755 28 H 0.235 0.765 29 H 0.057 0.943 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.708 -11.870 -2.071 12.170 hybrid contribution 1.221 0.738 -0.422 1.488 sum 2.929 -11.132 -2.494 11.778 Atomic orbital electron populations 1.70148 1.06455 1.25809 1.54144 1.25765 0.96062 1.01345 1.00966 0.85262 0.78263 0.79636 0.77189 1.21577 1.21800 1.19448 1.19432 0.93534 0.85788 1.41073 0.91169 1.44291 1.36409 1.01640 1.50687 1.20704 0.85651 0.99563 0.89824 1.20604 0.99225 0.92110 0.98753 1.20888 0.88312 0.94330 0.93435 1.67611 1.35507 1.07823 1.17187 1.22869 0.97497 0.91477 0.91569 1.21738 0.91977 1.04282 1.10915 1.18036 0.87597 0.90927 0.90178 1.42297 1.03532 1.29001 1.64065 1.20753 0.97480 0.98554 1.07533 1.19660 0.91916 0.85232 0.96251 0.94011 0.96373 0.91020 0.91695 0.91426 0.80322 0.81850 0.75456 0.76514 0.94333 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.44 10.16 21.65 0.22 -53.22 16 2 C -0.04 -2.48 4.93 84.86 0.42 -2.07 16 3 Si 0.97 44.45 29.59 68.60 2.03 46.48 16 4 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 5 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.27 -14.74 9.68 84.03 0.81 -13.92 16 8 H 0.07 3.71 7.90 -2.91 -0.02 3.68 16 9 N -0.61 -31.16 2.96 -704.40 -2.09 -33.25 16 10 C 0.17 8.45 5.59 86.16 0.48 8.93 16 11 C -0.07 -3.26 6.01 29.77 0.18 -3.08 16 12 C 0.16 7.30 6.64 42.17 0.28 7.58 16 13 N -0.57 -23.22 10.18 -184.30 -1.88 -25.10 16 14 C 0.12 3.92 11.18 84.65 0.95 4.87 16 15 C -0.26 -7.26 10.00 22.44 0.22 -7.03 16 16 C 0.25 7.83 6.77 38.63 0.26 8.09 16 17 N -0.85 -18.95 8.98 -50.85 -0.46 -19.40 16 18 C -0.23 -9.58 5.83 -19.69 -0.11 -9.69 16 19 C 0.20 8.29 5.35 85.58 0.46 8.74 16 20 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 21 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 22 H 0.07 3.95 5.92 -2.39 -0.01 3.93 16 23 H 0.06 2.92 8.14 -2.39 -0.02 2.90 16 24 H 0.07 3.75 7.16 -2.39 -0.02 3.74 16 25 H 0.18 4.12 8.06 -2.91 -0.02 4.10 16 26 H 0.16 3.06 8.06 -2.91 -0.02 3.03 16 27 H 0.41 6.24 8.85 -92.71 -0.82 5.42 16 28 H 0.40 8.85 7.18 -92.71 -0.67 8.19 16 29 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.06 2.42 7.32 -2.39 -0.02 2.40 16 Total: -1.00 -66.77 248.36 1.46 -65.30 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -0.31 Total: 16.77 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: 3.95 Total: 2.42 kcal Atomic # 7 Polarization: -126.77 SS G_CDS: -4.20 Total: -130.97 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -66.77 1.46 -65.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931510230.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.245 kcal (2) G-P(sol) polarization free energy of solvation -66.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds