Wall clock time and date at job start Thu Apr 9 2020 14:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42907 * 109.47259 * 2 1 4 4 C 1.35893 * 117.00490 * 179.97438 * 3 2 1 5 5 C 1.38737 * 120.05726 * 179.97438 * 4 3 2 6 6 C 1.38142 * 119.94096 * 179.97438 * 5 4 3 7 7 C 1.38259 * 120.05784 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.94354 * 179.97438 * 7 6 5 9 9 H 1.08999 * 109.47082 * 0.02562 * 8 7 6 10 10 C 1.53000 * 109.46939 * 119.99959 * 8 7 6 11 11 C 1.50697 * 109.47410 * 240.00213 * 8 7 6 12 12 H 1.08000 * 119.99666 * 326.58801 * 11 8 7 13 13 C 1.37869 * 120.00353 * 146.59158 * 11 8 7 14 14 N 1.31513 * 119.99958 * 177.86663 * 13 11 8 15 15 Si 1.86798 * 120.00034 * 357.86138 * 13 11 8 16 16 H 1.48501 * 109.47525 * 268.79777 * 15 13 11 17 17 H 1.48504 * 109.46952 * 28.79525 * 15 13 11 18 18 H 1.48503 * 109.47147 * 148.79382 * 15 13 11 19 19 C 1.38259 * 120.11657 * 0.27119 * 7 6 5 20 20 C 1.38155 * 120.04940 * 359.45657 * 19 7 6 21 21 H 1.08999 * 109.46518 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47109 * 299.99895 * 1 2 3 23 23 H 1.08996 * 109.46952 * 60.00020 * 1 2 3 24 24 H 1.09001 * 109.47435 * 240.00137 * 2 1 3 25 25 H 1.09002 * 109.47606 * 119.99833 * 2 1 3 26 26 H 1.08004 * 120.02512 * 359.95911 * 5 4 3 27 27 H 1.08004 * 119.97058 * 180.02562 * 6 5 4 28 28 H 1.08995 * 109.47247 * 61.10738 * 10 8 7 29 29 H 1.09005 * 109.46630 * 181.10970 * 10 8 7 30 30 H 1.09003 * 109.47263 * 301.10869 * 10 8 7 31 31 H 0.97006 * 120.00266 * 179.97438 * 14 13 11 32 32 H 1.07995 * 119.97984 * 179.70386 * 19 7 6 33 33 H 1.08000 * 120.02403 * 180.27548 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5255 0.0005 5 6 3.8851 2.8070 0.0000 6 6 5.2549 2.9853 0.0011 7 6 6.0961 1.8880 0.0022 8 6 7.5902 2.0855 0.0028 9 1 7.8157 3.1519 0.0027 10 6 8.1897 1.4381 1.2527 11 6 8.1819 1.4464 -1.2270 12 1 7.7397 0.5498 -1.6355 13 6 9.2878 2.0063 -1.8306 14 7 9.8295 1.4254 -2.8788 15 14 10.0167 3.5899 -1.1597 16 1 9.3948 4.7508 -1.8458 17 1 9.7524 3.6774 0.2990 18 1 11.4823 3.6005 -1.3988 19 6 5.5690 0.6099 -0.0035 20 6 4.1998 0.4261 0.0011 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.2283 3.6644 -0.0015 27 1 5.6692 3.9827 0.0012 28 1 7.9810 0.3683 1.2434 29 1 9.2679 1.5980 1.2631 30 1 7.7472 1.8868 2.1421 31 1 10.6074 1.8195 -3.3038 32 1 6.2281 -0.2456 -0.0075 33 1 3.7885 -0.5725 0.0011 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084348991.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:13:46 Heat of formation + Delta-G solvation = -48.001013 kcal Electronic energy + Delta-G solvation = -14469.858015 eV Core-core repulsion = 12073.567675 eV Total energy + Delta-G solvation = -2396.290340 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.120 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.02287 -38.88247 -35.81017 -33.65311 -32.45878 -31.76086 -29.28534 -27.16121 -24.88354 -24.06511 -22.52606 -21.13985 -19.14784 -18.92476 -16.97843 -16.92324 -16.62489 -15.73313 -15.26447 -14.82061 -14.51235 -14.30480 -14.28038 -13.82434 -13.55813 -13.39077 -13.14922 -12.87928 -12.55762 -12.46911 -12.29199 -11.73966 -11.67427 -11.49907 -11.34762 -11.00292 -10.68545 -9.82754 -8.83225 -8.25482 -6.28735 0.51060 0.65130 1.37399 1.38895 1.50268 2.34600 2.38027 2.93847 3.14670 3.93795 4.02854 4.08455 4.18302 4.28040 4.40029 4.52208 4.59391 4.62138 4.77787 4.88102 4.97050 4.97902 5.01898 5.20005 5.23182 5.27668 5.45562 5.48380 5.64893 5.70585 5.93402 6.01249 6.37156 6.57415 6.77271 7.35718 8.91309 Molecular weight = 220.12amu Principal moments of inertia in cm(-1) A = 0.050365 B = 0.006384 C = 0.006239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.810845 B = 4385.120739 C = 4486.696690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.043 3.957 3 O -0.331 6.331 4 C 0.101 3.899 5 C -0.154 4.154 6 C -0.099 4.099 7 C -0.091 4.091 8 C 0.040 3.960 9 H 0.041 0.959 10 C -0.130 4.130 11 C -0.503 4.503 12 H 0.033 0.967 13 C 0.009 3.991 14 N -0.953 5.953 15 Si 0.938 3.062 16 H -0.269 1.269 17 H -0.237 1.237 18 H -0.289 1.289 19 C -0.086 4.086 20 C -0.206 4.206 21 H 0.099 0.901 22 H 0.066 0.934 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.144 0.856 27 H 0.136 0.864 28 H 0.044 0.956 29 H 0.039 0.961 30 H 0.051 0.949 31 H 0.264 0.736 32 H 0.112 0.888 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.970 0.173 8.520 17.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.032 4.032 3 O -0.246 6.246 4 C 0.056 3.944 5 C -0.173 4.173 6 C -0.117 4.117 7 C -0.092 4.092 8 C 0.021 3.979 9 H 0.059 0.941 10 C -0.187 4.187 11 C -0.541 4.541 12 H 0.052 0.948 13 C -0.187 4.187 14 N -0.593 5.593 15 Si 0.762 3.238 16 H -0.195 1.195 17 H -0.160 1.160 18 H -0.215 1.215 19 C -0.104 4.104 20 C -0.225 4.225 21 H 0.118 0.882 22 H 0.085 0.915 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.162 0.838 27 H 0.153 0.847 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.130 0.870 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -14.998 0.312 8.401 17.193 hybrid contribution 0.945 0.098 -0.402 1.031 sum -14.053 0.410 7.999 16.175 Atomic orbital electron populations 1.21785 0.91011 1.04160 1.03269 1.23035 0.97139 0.81136 1.01868 1.86004 1.18480 1.30916 1.89169 1.18978 0.82490 0.94257 0.98658 1.20541 0.94849 0.95313 1.06582 1.21068 0.92405 0.98959 0.99312 1.20209 0.96540 0.93492 0.98929 1.18244 0.89018 0.96591 0.94074 0.94104 1.21903 0.99600 1.00323 0.96899 1.21218 1.11748 1.10760 1.10353 0.94839 1.25925 0.97017 1.00914 0.94868 1.70056 1.23784 1.42016 1.23489 0.85865 0.77247 0.79778 0.80922 1.19482 1.16022 1.21488 1.20834 0.94395 0.97127 0.98063 1.21342 0.93614 0.98752 1.08758 0.88191 0.91523 0.91876 0.92035 0.91379 0.83846 0.84667 0.93643 0.94192 0.93008 0.92667 0.86956 0.84030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 10.28 71.98 0.74 -1.43 16 2 C 0.04 0.90 5.46 71.98 0.39 1.29 16 3 O -0.33 -9.51 10.14 -92.35 -0.94 -10.45 16 4 C 0.10 3.32 6.69 22.51 0.15 3.47 16 5 C -0.15 -5.09 9.99 22.37 0.22 -4.87 16 6 C -0.10 -3.64 9.66 22.25 0.22 -3.42 16 7 C -0.09 -3.82 4.77 -19.85 -0.09 -3.92 16 8 C 0.04 1.83 2.03 -12.28 -0.02 1.80 16 9 H 0.04 1.84 5.11 -2.39 -0.01 1.83 16 10 C -0.13 -5.32 8.90 71.98 0.64 -4.68 16 11 C -0.50 -28.47 8.64 25.60 0.22 -28.25 16 12 H 0.03 2.11 7.62 -2.91 -0.02 2.09 16 13 C 0.01 0.52 5.47 84.65 0.46 0.99 16 14 N -0.95 -59.77 13.96 21.44 0.30 -59.47 16 15 Si 0.94 43.66 26.75 68.60 1.83 45.49 16 16 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 17 H -0.24 -10.02 6.43 99.48 0.64 -9.38 16 18 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 19 C -0.09 -3.40 8.59 22.25 0.19 -3.21 16 20 C -0.21 -6.92 9.04 22.37 0.20 -6.72 16 21 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 22 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.06 1.27 7.66 -2.39 -0.02 1.25 16 25 H 0.07 1.30 7.66 -2.39 -0.02 1.28 16 26 H 0.14 3.97 8.06 -2.91 -0.02 3.94 16 27 H 0.14 4.43 7.94 -2.91 -0.02 4.41 16 28 H 0.04 1.83 7.44 -2.39 -0.02 1.81 16 29 H 0.04 1.65 7.60 -2.38 -0.02 1.63 16 30 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.26 15.55 8.31 -92.70 -0.77 14.78 16 32 H 0.11 4.57 7.51 -2.91 -0.02 4.55 16 33 H 0.14 3.91 6.30 -2.91 -0.02 3.89 16 Total: -1.00 -66.20 274.79 5.53 -60.67 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 1.01 Total: 12.71 kcal Atomic # 6 Polarization: -52.27 SS G_CDS: 3.32 Total: -48.95 kcal Atomic # 7 Polarization: -59.77 SS G_CDS: 0.30 Total: -59.47 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: -0.94 Total: -10.45 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.83 Total: 45.49 kcal Total: -66.20 5.53 -60.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084348991.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.672 kcal (2) G-P(sol) polarization free energy of solvation -66.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds