Wall clock time and date at job start Thu Apr 9 2020 14:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46645 * 2 1 4 4 O 1.42899 * 109.47063 * 239.99862 * 2 1 3 5 5 C 1.53001 * 109.46867 * 120.00056 * 2 1 3 6 6 H 1.08999 * 109.47097 * 299.99703 * 5 2 1 7 7 N 1.46893 * 109.47654 * 60.00040 * 5 2 1 8 8 C 1.50705 * 109.46689 * 180.02562 * 5 2 1 9 9 C 1.37639 * 120.12452 * 264.97736 * 8 5 2 10 10 C 1.38606 * 120.24870 * 180.02562 * 9 8 5 11 11 C 1.38653 * 120.50218 * 359.97438 * 10 9 8 12 12 C 1.37595 * 120.25037 * 0.02562 * 11 10 9 13 13 C 1.40693 * 120.13164 * 84.99925 * 8 5 2 14 14 C 1.41400 * 120.24118 * 359.95350 * 13 8 5 15 15 H 1.07998 * 120.00371 * 334.19218 * 14 13 8 16 16 C 1.39945 * 119.99531 * 154.19204 * 14 13 8 17 17 N 1.30820 * 120.00362 * 343.54319 * 16 14 13 18 18 Si 1.86800 * 119.99690 * 163.54016 * 16 14 13 19 19 H 1.48505 * 109.47363 * 60.00167 * 18 16 14 20 20 H 1.48502 * 109.47369 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47194 * 300.00080 * 18 16 14 22 22 H 1.09007 * 109.46954 * 299.99829 * 1 2 3 23 23 H 1.08995 * 109.47450 * 59.99699 * 1 2 3 24 24 H 1.08994 * 109.46992 * 180.02562 * 1 2 3 25 25 H 0.96702 * 113.99971 * 60.00073 * 4 2 1 26 26 H 1.00901 * 111.00003 * 59.99718 * 7 5 2 27 27 H 1.00899 * 111.00677 * 183.95440 * 7 5 2 28 28 H 1.08001 * 119.87581 * 0.02562 * 9 8 5 29 29 H 1.08010 * 119.75210 * 180.02562 * 10 9 8 30 30 H 1.08008 * 119.87638 * 180.28134 * 11 10 9 31 31 H 1.08003 * 120.13121 * 180.02562 * 12 11 10 32 32 H 0.97001 * 119.99960 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.0400 -0.7213 1.2493 6 1 1.6767 -0.2074 2.1392 7 7 1.5504 -2.1062 1.2493 8 6 3.5471 -0.7207 1.2495 9 6 4.2384 -1.7995 0.7468 10 6 5.6244 -1.8019 0.7463 11 6 6.3303 -0.7202 1.2504 12 6 5.6601 0.3690 1.7580 13 6 4.2528 0.3823 1.7641 14 6 3.5533 1.4964 2.2827 15 1 2.5547 1.7165 1.9353 16 6 4.1550 2.3137 3.2461 17 7 5.2050 1.8890 3.9008 18 14 3.4590 4.0112 3.5973 19 1 2.0542 3.8839 4.0616 20 1 4.2712 4.6711 4.6510 21 1 3.4986 4.8286 2.3580 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 1.7211 -0.2701 -1.9979 26 1 1.8739 -2.6042 0.4336 27 1 1.8198 -2.5850 2.0956 28 1 3.6988 -2.6473 0.3512 29 1 6.1588 -2.6526 0.3494 30 1 7.4102 -0.7308 1.2408 31 1 6.2118 1.2108 2.1498 32 1 5.6223 2.4557 4.5684 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104497113.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:01 Heat of formation + Delta-G solvation = -42.045334 kcal Electronic energy + Delta-G solvation = -15319.585739 eV Core-core repulsion = 12858.127746 eV Total energy + Delta-G solvation = -2461.457994 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.44644 -36.53267 -33.81195 -33.44330 -29.98401 -29.68505 -28.57702 -25.40812 -24.46908 -21.08451 -20.64565 -19.03694 -17.26741 -16.81221 -15.42806 -15.03271 -14.84991 -14.20034 -13.87616 -13.32980 -12.97783 -12.55150 -12.32140 -12.05296 -11.70526 -11.44863 -11.32101 -11.08741 -10.95853 -10.85725 -10.45957 -10.06484 -9.60995 -9.47342 -9.30167 -9.16498 -7.98841 -7.33357 -7.25997 -6.74647 -4.36784 2.79959 3.02523 3.05324 3.07612 3.25342 3.91713 4.63972 4.89742 5.35462 5.47123 5.69543 5.77742 5.98685 6.19195 6.28029 6.32798 6.39557 6.50974 6.67507 6.72283 6.87150 7.07832 7.29332 7.37887 7.63213 7.76678 7.92818 8.08160 8.12273 8.16073 8.22864 8.33510 8.63145 8.89929 8.99579 10.19454 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.022656 B = 0.012547 C = 0.008975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.595911 B = 2231.055047 C = 3118.968893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.112 3.888 3 H 0.057 0.943 4 O -0.559 6.559 5 C 0.161 3.839 6 H 0.092 0.908 7 N -0.842 5.842 8 C -0.218 4.218 9 C -0.078 4.078 10 C -0.241 4.241 11 C -0.109 4.109 12 C -0.163 4.163 13 C 0.118 3.882 14 C -0.465 4.465 15 H 0.077 0.923 16 C 0.078 3.922 17 N -0.795 5.795 18 Si 0.904 3.096 19 H -0.265 1.265 20 H -0.279 1.279 21 H -0.264 1.264 22 H 0.058 0.942 23 H 0.041 0.959 24 H 0.070 0.930 25 H 0.363 0.637 26 H 0.339 0.661 27 H 0.334 0.666 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.116 0.884 32 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.951 -0.615 -3.947 6.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.053 3.947 3 H 0.075 0.925 4 O -0.363 6.363 5 C 0.050 3.950 6 H 0.109 0.891 7 N -0.370 5.370 8 C -0.221 4.221 9 C -0.097 4.097 10 C -0.260 4.260 11 C -0.128 4.128 12 C -0.182 4.182 13 C 0.115 3.885 14 C -0.495 4.495 15 H 0.095 0.905 16 C -0.140 4.140 17 N -0.421 5.421 18 Si 0.728 3.272 19 H -0.190 1.190 20 H -0.204 1.204 21 H -0.189 1.189 22 H 0.077 0.923 23 H 0.060 0.940 24 H 0.089 0.911 25 H 0.208 0.792 26 H 0.152 0.848 27 H 0.146 0.854 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.134 0.866 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.268 -0.608 -3.313 6.253 hybrid contribution 0.669 0.947 -0.095 1.163 sum -4.599 0.339 -3.408 5.734 Atomic orbital electron populations 1.22402 0.97211 1.02829 1.00771 1.21881 0.91638 0.95438 0.85728 0.92475 1.86559 1.77138 1.57246 1.15344 1.20017 0.90504 0.88947 0.95542 0.89060 1.59120 1.66332 1.04116 1.07407 1.20304 0.94610 0.96141 1.11036 1.20224 0.93646 0.96978 0.98842 1.20337 0.93941 0.99733 1.12002 1.20677 0.97229 0.95052 0.99818 1.21304 0.94731 0.98373 1.03800 1.17413 0.91739 0.90725 0.88624 1.19497 1.01780 1.08576 1.19622 0.90468 1.25882 0.94233 0.99374 0.94520 1.69816 1.18300 1.36302 1.17634 0.86442 0.79875 0.82058 0.78807 1.18961 1.20386 1.18884 0.92271 0.93997 0.91057 0.79206 0.84790 0.85450 0.89699 0.89860 0.89722 0.86637 0.90911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.66 9.38 37.16 0.35 -2.31 16 2 C 0.11 2.04 3.27 -26.73 -0.09 1.96 16 3 H 0.06 1.12 7.29 -51.93 -0.38 0.74 16 4 O -0.56 -9.87 12.21 -35.23 -0.43 -10.30 16 5 C 0.16 3.28 2.20 -68.87 -0.15 3.12 16 6 H 0.09 1.98 7.06 -51.93 -0.37 1.62 16 7 N -0.84 -15.02 8.06 -5.66 -0.05 -15.06 16 8 C -0.22 -5.15 4.80 -103.91 -0.50 -5.65 16 9 C -0.08 -1.80 9.09 -39.66 -0.36 -2.16 16 10 C -0.24 -5.62 10.05 -39.29 -0.39 -6.01 16 11 C -0.11 -2.66 10.02 -39.66 -0.40 -3.05 16 12 C -0.16 -4.29 8.69 -38.87 -0.34 -4.63 16 13 C 0.12 3.08 5.56 -106.82 -0.59 2.49 16 14 C -0.47 -11.89 8.11 -37.74 -0.31 -12.20 16 15 H 0.08 1.87 6.09 -52.49 -0.32 1.55 16 16 C 0.08 1.91 5.16 -17.34 -0.09 1.83 16 17 N -0.80 -20.44 10.97 55.55 0.61 -19.83 16 18 Si 0.90 18.43 29.59 -169.99 -5.03 13.40 16 19 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 20 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 21 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 22 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.07 1.11 7.60 -51.93 -0.39 0.72 16 25 H 0.36 4.76 9.08 45.56 0.41 5.17 16 26 H 0.34 6.03 6.67 -39.29 -0.26 5.77 16 27 H 0.33 5.79 9.06 -39.29 -0.36 5.44 16 28 H 0.08 1.77 6.28 -52.49 -0.33 1.44 16 29 H 0.08 1.74 8.06 -52.48 -0.42 1.32 16 30 H 0.08 1.85 8.06 -52.48 -0.42 1.43 16 31 H 0.12 3.13 6.21 -52.48 -0.33 2.81 16 32 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 LS Contribution 264.52 15.07 3.99 3.99 Total: -1.00 -27.67 264.52 -6.92 -34.60 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: -3.15 Total: 19.81 kcal Atomic # 6 Polarization: -23.74 SS G_CDS: -2.87 Total: -26.61 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: 0.56 Total: -34.89 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: -0.43 Total: -10.30 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.40 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -27.67 -6.92 -34.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104497113.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.447 kcal (2) G-P(sol) polarization free energy of solvation -27.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds