Wall clock time and date at job start Thu Apr 9 2020 14:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46645 * 2 1 4 4 O 1.42899 * 109.47063 * 239.99862 * 2 1 3 5 5 C 1.53001 * 109.46867 * 120.00056 * 2 1 3 6 6 H 1.08999 * 109.47097 * 299.99703 * 5 2 1 7 7 N 1.46893 * 109.47654 * 60.00040 * 5 2 1 8 8 C 1.50705 * 109.46689 * 180.02562 * 5 2 1 9 9 C 1.37639 * 120.12452 * 264.97736 * 8 5 2 10 10 C 1.38606 * 120.24870 * 180.02562 * 9 8 5 11 11 C 1.38653 * 120.50218 * 359.97438 * 10 9 8 12 12 C 1.37595 * 120.25037 * 0.02562 * 11 10 9 13 13 C 1.40693 * 120.13164 * 84.99925 * 8 5 2 14 14 C 1.41400 * 120.24118 * 359.95350 * 13 8 5 15 15 H 1.07998 * 120.00371 * 334.19218 * 14 13 8 16 16 C 1.39945 * 119.99531 * 154.19204 * 14 13 8 17 17 N 1.30820 * 120.00362 * 343.54319 * 16 14 13 18 18 Si 1.86800 * 119.99690 * 163.54016 * 16 14 13 19 19 H 1.48505 * 109.47363 * 60.00167 * 18 16 14 20 20 H 1.48502 * 109.47369 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47194 * 300.00080 * 18 16 14 22 22 H 1.09007 * 109.46954 * 299.99829 * 1 2 3 23 23 H 1.08995 * 109.47450 * 59.99699 * 1 2 3 24 24 H 1.08994 * 109.46992 * 180.02562 * 1 2 3 25 25 H 0.96702 * 113.99971 * 60.00073 * 4 2 1 26 26 H 1.00901 * 111.00003 * 59.99718 * 7 5 2 27 27 H 1.00899 * 111.00677 * 183.95440 * 7 5 2 28 28 H 1.08001 * 119.87581 * 0.02562 * 9 8 5 29 29 H 1.08010 * 119.75210 * 180.02562 * 10 9 8 30 30 H 1.08008 * 119.87638 * 180.28134 * 11 10 9 31 31 H 1.08003 * 120.13121 * 180.02562 * 12 11 10 32 32 H 0.97001 * 119.99960 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.0400 -0.7213 1.2493 6 1 1.6767 -0.2074 2.1392 7 7 1.5504 -2.1062 1.2493 8 6 3.5471 -0.7207 1.2495 9 6 4.2384 -1.7995 0.7468 10 6 5.6244 -1.8019 0.7463 11 6 6.3303 -0.7202 1.2504 12 6 5.6601 0.3690 1.7580 13 6 4.2528 0.3823 1.7641 14 6 3.5533 1.4964 2.2827 15 1 2.5547 1.7165 1.9353 16 6 4.1550 2.3137 3.2461 17 7 5.2050 1.8890 3.9008 18 14 3.4590 4.0112 3.5973 19 1 2.0542 3.8839 4.0616 20 1 4.2712 4.6711 4.6510 21 1 3.4986 4.8286 2.3580 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 1.7211 -0.2701 -1.9979 26 1 1.8739 -2.6042 0.4336 27 1 1.8198 -2.5850 2.0956 28 1 3.6988 -2.6473 0.3512 29 1 6.1588 -2.6526 0.3494 30 1 7.4102 -0.7308 1.2408 31 1 6.2118 1.2108 2.1498 32 1 5.6223 2.4557 4.5684 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104497113.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:01 Heat of formation + Delta-G solvation = -61.552479 kcal Electronic energy + Delta-G solvation = -15320.431632 eV Core-core repulsion = 12858.127746 eV Total energy + Delta-G solvation = -2462.303887 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.14536 -38.11211 -35.58663 -35.08562 -31.76464 -31.16442 -30.31747 -27.23907 -26.06621 -22.80914 -22.40164 -20.72749 -19.14705 -18.25417 -17.24454 -16.55844 -16.48777 -15.71335 -15.61696 -14.99953 -14.56122 -14.32492 -13.97602 -13.55951 -13.23591 -13.07393 -12.85352 -12.82283 -12.69190 -12.42020 -12.11792 -11.64262 -11.35154 -11.28053 -11.03144 -10.71705 -9.55086 -9.25530 -9.10794 -8.59477 -6.30313 1.00071 1.14798 1.38371 1.48617 1.55100 2.20844 2.77369 3.55952 3.74116 3.85855 4.22824 4.30576 4.41670 4.57273 4.65362 4.72976 4.83489 5.00288 5.06446 5.16880 5.27915 5.38501 5.49033 5.54141 5.76206 6.03566 6.08657 6.20955 6.31653 6.46174 6.72050 6.72692 6.99000 7.05715 7.10208 8.36728 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.022656 B = 0.012547 C = 0.008975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.595911 B = 2231.055047 C = 3118.968893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.117 3.883 3 H 0.038 0.962 4 O -0.572 6.572 5 C 0.163 3.837 6 H 0.073 0.927 7 N -0.826 5.826 8 C -0.219 4.219 9 C -0.084 4.084 10 C -0.245 4.245 11 C -0.119 4.119 12 C -0.194 4.194 13 C 0.086 3.914 14 C -0.488 4.488 15 H 0.082 0.918 16 C 0.035 3.965 17 N -0.829 5.829 18 Si 0.974 3.026 19 H -0.256 1.256 20 H -0.272 1.272 21 H -0.261 1.261 22 H 0.058 0.942 23 H 0.067 0.933 24 H 0.070 0.930 25 H 0.384 0.616 26 H 0.342 0.658 27 H 0.338 0.662 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.258 -0.793 -4.709 7.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.058 3.942 3 H 0.056 0.944 4 O -0.379 6.379 5 C 0.052 3.948 6 H 0.091 0.909 7 N -0.355 5.355 8 C -0.222 4.222 9 C -0.103 4.103 10 C -0.264 4.264 11 C -0.137 4.137 12 C -0.213 4.213 13 C 0.084 3.916 14 C -0.518 4.518 15 H 0.100 0.900 16 C -0.179 4.179 17 N -0.456 5.456 18 Si 0.795 3.205 19 H -0.180 1.180 20 H -0.197 1.197 21 H -0.185 1.185 22 H 0.077 0.923 23 H 0.086 0.914 24 H 0.089 0.911 25 H 0.232 0.768 26 H 0.156 0.844 27 H 0.149 0.851 28 H 0.127 0.873 29 H 0.128 0.872 30 H 0.121 0.879 31 H 0.115 0.885 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.582 -0.801 -4.096 7.794 hybrid contribution 1.111 0.894 0.086 1.429 sum -5.471 0.093 -4.010 6.783 Atomic orbital electron populations 1.22281 0.94567 1.03154 1.02074 1.21682 0.93521 0.93858 0.85140 0.94431 1.86489 1.77641 1.57540 1.16224 1.19927 0.88455 0.90317 0.96147 0.90865 1.59081 1.65640 1.02989 1.07749 1.20726 0.96560 0.95413 1.09537 1.20534 0.93839 0.97456 0.98442 1.20709 0.94461 1.00056 1.11193 1.20928 0.98375 0.94880 0.99550 1.21311 0.95284 0.98925 1.05795 1.17801 0.92057 0.92077 0.89690 1.19737 1.02264 1.09431 1.20369 0.90029 1.26730 0.94404 1.02887 0.93921 1.69891 1.19607 1.37786 1.18281 0.85371 0.79429 0.76989 0.78711 1.18024 1.19701 1.18548 0.92338 0.91387 0.91120 0.76793 0.84378 0.85074 0.87318 0.87187 0.87936 0.88543 0.90444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.57 9.38 71.98 0.68 -3.89 16 2 C 0.12 4.10 3.27 30.60 0.10 4.20 16 3 H 0.04 1.46 7.29 -2.39 -0.02 1.44 16 4 O -0.57 -18.96 12.21 -148.98 -1.82 -20.78 16 5 C 0.16 6.51 2.20 44.17 0.10 6.61 16 6 H 0.07 3.19 7.06 -2.39 -0.02 3.18 16 7 N -0.83 -28.00 8.06 -171.81 -1.38 -29.38 16 8 C -0.22 -10.31 4.80 -19.40 -0.09 -10.40 16 9 C -0.08 -3.75 9.09 22.22 0.20 -3.55 16 10 C -0.25 -11.10 10.05 22.46 0.23 -10.88 16 11 C -0.12 -5.80 10.02 22.22 0.22 -5.58 16 12 C -0.19 -10.49 8.69 22.73 0.20 -10.30 16 13 C 0.09 4.61 5.56 -21.29 -0.12 4.49 16 14 C -0.49 -25.49 8.11 23.46 0.19 -25.30 16 15 H 0.08 4.03 6.09 -2.91 -0.02 4.01 16 16 C 0.04 1.75 5.16 85.26 0.44 2.19 16 17 N -0.83 -43.75 10.97 21.83 0.24 -43.51 16 18 Si 0.97 37.90 29.59 68.60 2.03 39.93 16 19 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 20 H -0.27 -10.20 7.11 99.48 0.71 -9.50 16 21 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 22 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 23 H 0.07 1.54 8.14 -2.39 -0.02 1.53 16 24 H 0.07 2.00 7.60 -2.39 -0.02 1.98 16 25 H 0.38 9.06 9.08 -74.06 -0.67 8.39 16 26 H 0.34 11.35 6.67 -89.69 -0.60 10.75 16 27 H 0.34 11.16 9.06 -89.69 -0.81 10.35 16 28 H 0.11 4.25 6.28 -2.91 -0.02 4.23 16 29 H 0.11 4.33 8.06 -2.91 -0.02 4.30 16 30 H 0.10 4.47 8.06 -2.91 -0.02 4.45 16 31 H 0.10 5.48 6.21 -2.91 -0.02 5.46 16 32 H 0.29 13.75 8.30 -92.71 -0.77 12.98 16 Total: -1.00 -59.30 264.52 0.28 -59.02 By element: Atomic # 1 Polarization: 48.04 SS G_CDS: -0.92 Total: 47.11 kcal Atomic # 6 Polarization: -54.52 SS G_CDS: 2.14 Total: -52.39 kcal Atomic # 7 Polarization: -71.75 SS G_CDS: -1.15 Total: -72.90 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -1.82 Total: -20.78 kcal Atomic # 14 Polarization: 37.90 SS G_CDS: 2.03 Total: 39.93 kcal Total: -59.30 0.28 -59.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104497113.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.532 kcal (2) G-P(sol) polarization free energy of solvation -59.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds