Wall clock time and date at job start Thu Apr 9 2020 14:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31994 * 119.62231 * 2 1 4 4 C 1.32322 * 121.69706 * 180.02562 * 3 2 1 5 5 N 1.39311 * 119.62537 * 179.97438 * 4 3 2 6 6 C 1.46504 * 119.99992 * 4.99985 * 5 4 3 7 7 C 1.46501 * 120.00007 * 185.00241 * 5 4 3 8 8 C 1.50699 * 109.47038 * 90.00062 * 7 5 4 9 9 H 1.08000 * 120.00509 * 359.97438 * 8 7 5 10 10 C 1.37881 * 119.99884 * 179.97438 * 8 7 5 11 11 N 1.31505 * 119.99971 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99833 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47033 * 90.00438 * 12 10 8 14 14 H 1.48494 * 109.47200 * 210.00162 * 12 10 8 15 15 H 1.48504 * 109.47389 * 330.00242 * 12 10 8 16 16 C 1.39083 * 120.74573 * 0.02562 * 4 3 2 17 17 C 1.38276 * 119.17525 * 359.72173 * 16 4 3 18 18 C 1.38625 * 119.62561 * 180.02562 * 2 1 3 19 19 N 1.40047 * 120.40521 * 359.97438 * 18 2 1 20 20 H 1.08998 * 109.47365 * 269.97771 * 1 2 3 21 21 H 1.08998 * 109.46811 * 29.97864 * 1 2 3 22 22 H 1.08997 * 109.46818 * 149.98020 * 1 2 3 23 23 H 1.09006 * 109.46997 * 90.00342 * 6 5 4 24 24 H 1.09002 * 109.47109 * 209.99548 * 6 5 4 25 25 H 1.08997 * 109.47602 * 329.99962 * 6 5 4 26 26 H 1.09004 * 109.46955 * 209.99872 * 7 5 4 27 27 H 1.08998 * 109.46855 * 330.00343 * 7 5 4 28 28 H 0.97007 * 120.00091 * 179.97438 * 11 10 8 29 29 H 1.08005 * 120.41301 * 179.97438 * 16 4 3 30 30 H 1.08003 * 120.78008 * 180.28889 * 17 16 4 31 31 H 0.97001 * 120.00365 * 0.02562 * 19 18 2 32 32 H 0.97005 * 119.99910 * 179.72110 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1595 1.1474 0.0000 4 6 3.4818 1.1953 -0.0005 5 7 4.1262 2.4305 -0.0010 6 6 3.3444 3.6645 0.1096 7 6 5.5855 2.4953 -0.1122 8 6 5.9755 2.5745 -1.5657 9 1 5.2127 2.5760 -2.3303 10 6 7.3063 2.6451 -1.9195 11 7 8.2352 2.6428 -0.9887 12 14 7.7897 2.7426 -3.7213 13 1 7.8597 4.1661 -4.1387 14 1 9.1170 2.1048 -3.9129 15 1 6.7768 2.0345 -4.5447 16 6 4.2357 0.0265 -0.0016 17 6 3.5864 -1.1943 0.0037 18 6 2.1923 -1.2050 -0.0005 19 7 1.4927 -2.4182 -0.0005 20 1 -0.3634 -0.0004 1.0276 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3633 -0.8898 -0.5141 23 1 3.2304 3.9294 1.1608 24 1 3.8602 4.4695 -0.4140 25 1 2.3612 3.5130 -0.3357 26 1 5.9508 3.3792 0.4107 27 1 6.0238 1.6023 0.3334 28 1 9.1715 2.6922 -1.2376 29 1 5.3148 0.0719 -0.0024 30 1 4.1462 -2.1180 0.0077 31 1 0.5227 -2.4188 -0.0005 32 1 1.9782 -3.2581 -0.0050 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122051894.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:09 Heat of formation + Delta-G solvation = 43.272886 kcal Electronic energy + Delta-G solvation = -14792.484067 eV Core-core repulsion = 12367.018500 eV Total energy + Delta-G solvation = -2425.465567 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.67999 -36.29489 -33.87634 -32.49186 -32.15956 -29.24489 -27.68745 -26.84497 -24.44275 -22.78584 -21.70138 -19.94616 -17.11837 -16.48492 -16.44028 -15.69589 -14.78593 -14.41549 -14.26132 -13.57625 -13.29752 -13.11967 -12.46325 -12.10837 -12.00878 -11.93555 -11.59226 -11.30221 -11.13177 -10.84950 -10.76913 -10.54176 -10.06932 -9.61413 -8.81476 -8.74134 -8.45953 -8.04405 -6.25905 -5.88869 -4.14250 1.95031 2.33128 3.28268 3.34739 3.39773 4.05985 4.31221 4.43126 4.64397 5.06640 5.24299 5.27387 5.68481 5.77724 5.83137 5.94422 6.05034 6.22553 6.32172 6.48108 6.59356 6.65063 6.70676 7.09418 7.19921 7.34656 7.81999 7.83873 8.05594 8.12375 8.21929 8.57974 8.87054 9.09676 9.53017 10.98262 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034695 B = 0.007535 C = 0.006930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.845783 B = 3715.217159 C = 4039.427725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.093 3.907 3 N -0.524 5.524 4 C 0.380 3.620 5 N -0.602 5.602 6 C 0.109 3.891 7 C 0.254 3.746 8 C -0.531 4.531 9 H 0.059 0.941 10 C 0.061 3.939 11 N -0.896 5.896 12 Si 0.896 3.104 13 H -0.280 1.280 14 H -0.285 1.285 15 H -0.274 1.274 16 C -0.184 4.184 17 C -0.108 4.108 18 C 0.082 3.918 19 N -0.887 5.887 20 H 0.066 0.934 21 H 0.071 0.929 22 H 0.061 0.939 23 H 0.030 0.970 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.034 0.966 27 H 0.035 0.965 28 H 0.264 0.736 29 H 0.141 0.859 30 H 0.122 0.878 31 H 0.390 0.610 32 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.254 -6.801 2.519 13.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.049 4.049 3 N -0.243 5.243 4 C 0.143 3.857 5 N -0.315 5.315 6 C -0.035 4.035 7 C 0.134 3.866 8 C -0.570 4.570 9 H 0.078 0.922 10 C -0.140 4.140 11 N -0.535 5.535 12 Si 0.723 3.277 13 H -0.206 1.206 14 H -0.211 1.211 15 H -0.199 1.199 16 C -0.210 4.210 17 C -0.138 4.138 18 C -0.022 4.022 19 N -0.432 5.432 20 H 0.084 0.916 21 H 0.090 0.910 22 H 0.080 0.920 23 H 0.048 0.952 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.159 0.841 30 H 0.140 0.860 31 H 0.219 0.781 32 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -11.363 -5.736 2.554 12.983 hybrid contribution 0.825 -1.024 -1.074 1.698 sum -10.539 -6.760 1.480 12.607 Atomic orbital electron populations 1.20448 0.90264 1.02169 1.01810 1.20189 0.95458 0.86573 1.02662 1.66805 1.08416 1.28415 1.20661 1.18217 0.87280 0.86855 0.93327 1.46813 1.07448 1.01053 1.76159 1.21299 0.96189 0.86888 0.99130 1.19288 0.72579 0.98036 0.96699 1.21623 0.91969 1.50719 0.92657 0.92240 1.24953 0.96324 0.95068 0.97703 1.69928 1.00593 1.50419 1.32550 0.86527 0.77828 0.78247 0.85055 1.20579 1.21111 1.19866 1.21460 1.01693 0.90886 1.06968 1.20739 0.91872 0.97937 1.03249 1.18159 0.91710 0.87170 1.05187 1.42160 1.07955 1.04358 1.88709 0.91573 0.91037 0.92044 0.95197 0.92157 0.91877 0.94846 0.94680 0.92669 0.84134 0.86011 0.78129 0.78344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.14 9.74 36.01 0.35 -0.79 16 2 C 0.09 1.62 6.80 -82.38 -0.56 1.06 16 3 N -0.52 -10.72 8.99 -8.47 -0.08 -10.79 16 4 C 0.38 8.42 7.38 -154.80 -1.14 7.28 16 5 N -0.60 -13.85 2.98 -183.03 -0.55 -14.40 16 6 C 0.11 2.17 10.50 59.85 0.63 2.80 16 7 C 0.25 6.51 5.00 -5.19 -0.03 6.49 16 8 C -0.53 -14.76 9.39 -34.44 -0.32 -15.08 16 9 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 10 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 11 N -0.90 -25.77 13.29 55.43 0.74 -25.03 16 12 Si 0.90 21.52 29.54 -169.99 -5.02 16.49 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 16 C -0.18 -3.86 9.27 -39.25 -0.36 -4.22 16 17 C -0.11 -1.90 10.04 -39.13 -0.39 -2.29 16 18 C 0.08 1.34 6.76 -83.52 -0.56 0.77 16 19 N -0.89 -10.30 9.01 32.53 0.29 -10.01 16 20 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 21 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 22 H 0.06 0.63 6.53 -51.93 -0.34 0.29 16 23 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 1.18 8.07 -51.93 -0.42 0.76 16 25 H 0.06 1.21 7.30 -51.93 -0.38 0.83 16 26 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 27 H 0.04 0.93 5.98 -51.93 -0.31 0.62 16 28 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.14 3.11 6.02 -52.48 -0.32 2.79 16 30 H 0.12 1.80 8.06 -52.48 -0.42 1.37 16 31 H 0.39 3.73 6.83 -40.82 -0.28 3.45 16 32 H 0.39 3.78 8.86 -40.82 -0.36 3.42 16 LS Contribution 271.71 15.07 4.09 4.09 Total: -1.00 -30.59 271.71 -7.07 -37.66 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -4.06 Total: 4.36 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -2.49 Total: -2.38 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: 0.41 Total: -60.23 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.59 -7.07 -37.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122051894.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.935 kcal (2) G-P(sol) polarization free energy of solvation -30.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds