Wall clock time and date at job start Thu Apr 9 2020 14:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46497 * 119.99998 * 2 1 4 4 C 1.52997 * 109.47195 * 89.99954 * 3 2 1 5 5 H 1.09002 * 109.47153 * 304.99547 * 4 3 2 6 6 O 1.42898 * 109.47319 * 64.99855 * 4 3 2 7 7 C 1.50699 * 109.47078 * 184.99754 * 4 3 2 8 8 H 1.07999 * 120.00019 * 359.97438 * 7 4 3 9 9 C 1.37877 * 120.00129 * 180.02562 * 7 4 3 10 10 N 1.31519 * 119.99723 * 359.97438 * 9 7 4 11 11 Si 1.86803 * 119.99900 * 179.97438 * 9 7 4 12 12 H 1.48495 * 109.47112 * 60.00201 * 11 9 7 13 13 H 1.48503 * 109.47000 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.46939 * 299.99464 * 11 9 7 15 15 C 1.39672 * 119.99546 * 179.97438 * 2 1 3 16 16 C 1.38913 * 120.07247 * 179.72414 * 15 2 1 17 17 C 1.38108 * 119.92280 * 179.77241 * 16 15 2 18 18 C 1.38282 * 120.07489 * 0.50467 * 17 16 15 19 19 C 1.38287 * 120.15169 * 359.75266 * 18 17 16 20 20 C 1.38110 * 120.07410 * 359.97438 * 19 18 17 21 21 H 1.09001 * 109.46608 * 89.99878 * 1 2 3 22 22 H 1.08991 * 109.47591 * 210.00140 * 1 2 3 23 23 H 1.09005 * 109.47058 * 330.00641 * 1 2 3 24 24 H 1.09001 * 109.47117 * 329.99290 * 3 2 1 25 25 H 1.09004 * 109.46581 * 209.99943 * 3 2 1 26 26 H 0.96698 * 113.99898 * 59.99520 * 6 4 3 27 27 H 0.97003 * 119.99231 * 179.97438 * 10 9 7 28 28 H 1.08000 * 120.03635 * 0.02562 * 16 15 2 29 29 H 1.08000 * 119.96342 * 180.25391 * 17 16 15 30 30 H 1.08002 * 119.92784 * 179.72253 * 18 17 16 31 31 H 1.07997 * 119.96487 * 179.97438 * 19 18 17 32 32 H 1.08000 * 120.03977 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7104 1.4425 5 1 1.5062 1.7550 1.9815 6 8 3.3209 0.7725 2.0814 7 6 3.0963 3.0730 1.4442 8 1 3.3033 3.5736 0.5100 9 6 3.4220 3.6800 2.6386 10 7 3.1704 3.0701 3.7763 11 14 4.2207 5.3687 2.6407 12 1 3.3185 6.3437 1.9770 13 1 4.4681 5.7975 4.0407 14 1 5.5098 5.3074 1.9061 15 6 2.1633 -1.2097 0.0005 16 6 3.5525 -1.2115 -0.0052 17 6 4.2398 -2.4094 0.0001 18 6 3.5468 -3.6060 0.0006 19 6 2.1639 -3.6078 0.0010 20 6 1.4703 -2.4135 0.0013 21 1 -0.3632 0.0000 -1.0277 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3633 0.8901 0.5138 24 1 1.6085 2.0283 -0.5139 25 1 3.1500 1.1383 -0.5139 26 1 4.1836 0.6810 1.6542 27 1 3.4000 3.4971 4.6165 28 1 4.0943 -0.2773 -0.0098 29 1 5.3198 -2.4116 -0.0003 30 1 4.0867 -4.5414 0.0002 31 1 1.6257 -4.5441 0.0009 32 1 0.3903 -2.4156 0.0012 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000141843842.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:18 Heat of formation + Delta-G solvation = -35.635853 kcal Electronic energy + Delta-G solvation = -15039.667114 eV Core-core repulsion = 12578.487056 eV Total energy + Delta-G solvation = -2461.180058 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.44331 -38.09270 -36.23637 -34.25456 -31.86081 -31.17709 -30.00337 -27.76019 -25.67751 -23.55190 -22.57582 -21.25749 -19.21092 -18.34190 -16.72257 -16.69452 -16.27334 -16.18673 -15.62437 -15.31715 -14.79251 -14.35538 -14.32607 -14.09685 -13.35356 -13.17998 -12.99304 -12.81267 -12.75061 -12.37645 -12.17736 -12.01519 -11.53914 -11.31844 -10.72135 -10.67408 -10.11470 -9.65648 -8.19812 -7.91414 -6.41548 0.70174 0.90171 1.40633 1.42169 1.50308 2.31543 2.47154 3.11682 3.17302 4.06449 4.11402 4.19865 4.33401 4.43796 4.52553 4.56354 4.73991 4.77668 4.80641 4.89748 4.98413 5.01666 5.28322 5.54290 5.57533 5.67593 5.76219 5.88084 6.01256 6.19190 6.48099 6.73662 6.78677 7.32373 7.53645 8.89691 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.042755 B = 0.007478 C = 0.006892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.733399 B = 3743.552640 C = 4061.929850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.634 5.634 3 C 0.111 3.889 4 C 0.219 3.781 5 H 0.014 0.986 6 O -0.571 6.571 7 C -0.589 4.589 8 H 0.065 0.935 9 C 0.026 3.974 10 N -0.900 5.900 11 Si 0.961 3.039 12 H -0.267 1.267 13 H -0.287 1.287 14 H -0.266 1.266 15 C 0.210 3.790 16 C -0.205 4.205 17 C -0.083 4.083 18 C -0.196 4.196 19 C -0.079 4.079 20 C -0.221 4.221 21 H 0.063 0.937 22 H 0.072 0.928 23 H 0.057 0.943 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.349 0.651 27 H 0.260 0.740 28 H 0.111 0.889 29 H 0.133 0.867 30 H 0.137 0.863 31 H 0.143 0.857 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.741 -8.946 -8.887 12.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.343 5.343 3 C -0.013 4.013 4 C 0.160 3.840 5 H 0.032 0.968 6 O -0.375 6.375 7 C -0.627 4.627 8 H 0.083 0.917 9 C -0.177 4.177 10 N -0.537 5.537 11 Si 0.786 3.214 12 H -0.192 1.192 13 H -0.213 1.213 14 H -0.191 1.191 15 C 0.107 3.893 16 C -0.228 4.228 17 C -0.101 4.101 18 C -0.216 4.216 19 C -0.098 4.098 20 C -0.244 4.244 21 H 0.082 0.918 22 H 0.090 0.910 23 H 0.076 0.924 24 H 0.094 0.906 25 H 0.088 0.912 26 H 0.194 0.806 27 H 0.069 0.931 28 H 0.128 0.872 29 H 0.151 0.849 30 H 0.155 0.845 31 H 0.161 0.839 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.394 -8.814 -8.307 12.346 hybrid contribution 0.724 1.289 0.131 1.485 sum -1.670 -7.525 -8.176 11.236 Atomic orbital electron populations 1.21677 0.79193 1.02554 1.01545 1.46646 1.05450 1.03057 1.79141 1.22117 0.96615 0.84343 0.98212 1.19625 0.89446 0.86559 0.88362 0.96807 1.86572 1.27737 1.64126 1.59022 1.22003 1.43375 1.04224 0.93081 0.91724 1.25927 0.95366 1.01256 0.95153 1.70236 1.46393 1.39178 0.97915 0.85591 0.79284 0.79520 0.77041 1.19165 1.21281 1.19097 1.18147 0.91855 0.86232 0.93045 1.20821 0.92663 0.98940 1.10360 1.21134 1.00244 0.91918 0.96839 1.21130 0.94534 0.98143 1.07771 1.21154 0.94559 0.97451 0.96611 1.20877 1.00118 0.91272 1.12096 0.91841 0.90963 0.92421 0.90610 0.91174 0.80628 0.93072 0.87154 0.84879 0.84466 0.83939 0.85324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.79 10.19 127.77 1.30 4.09 16 2 N -0.63 -23.34 2.98 -722.18 -2.15 -25.49 16 3 C 0.11 4.49 4.91 86.38 0.42 4.92 16 4 C 0.22 11.18 3.07 29.85 0.09 11.27 16 5 H 0.01 0.82 8.14 -2.39 -0.02 0.80 16 6 O -0.57 -30.27 11.34 -148.98 -1.69 -31.96 16 7 C -0.59 -31.86 8.76 25.60 0.22 -31.64 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 9 C 0.03 1.42 5.40 84.65 0.46 1.88 16 10 N -0.90 -54.31 12.84 21.45 0.28 -54.04 16 11 Si 0.96 43.01 29.54 68.60 2.03 45.04 16 12 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 13 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 14 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 15 C 0.21 7.58 6.30 38.22 0.24 7.82 16 16 C -0.21 -7.29 7.94 22.40 0.18 -7.11 16 17 C -0.08 -2.49 10.04 22.25 0.22 -2.27 16 18 C -0.20 -5.26 10.04 22.29 0.22 -5.03 16 19 C -0.08 -2.13 10.04 22.25 0.22 -1.91 16 20 C -0.22 -6.86 9.21 22.40 0.21 -6.65 16 21 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 22 H 0.07 1.98 6.19 -2.39 -0.01 1.96 16 23 H 0.06 1.80 8.07 -2.38 -0.02 1.78 16 24 H 0.08 2.90 8.07 -2.39 -0.02 2.88 16 25 H 0.07 2.75 6.19 -2.39 -0.01 2.73 16 26 H 0.35 16.80 7.31 -74.06 -0.54 16.26 16 27 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 28 H 0.11 4.06 4.66 -2.91 -0.01 4.05 16 29 H 0.13 3.35 8.06 -2.91 -0.02 3.32 16 30 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 31 H 0.14 2.86 8.06 -2.91 -0.02 2.84 16 32 H 0.13 3.49 6.14 -2.91 -0.02 3.47 16 Total: -1.00 -65.49 267.06 2.83 -62.66 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: 0.58 Total: 28.42 kcal Atomic # 6 Polarization: -28.42 SS G_CDS: 3.79 Total: -24.63 kcal Atomic # 7 Polarization: -77.65 SS G_CDS: -1.88 Total: -79.53 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -1.69 Total: -31.96 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -65.49 2.83 -62.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000141843842.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.027 kcal (2) G-P(sol) polarization free energy of solvation -65.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds