Wall clock time and date at job start Thu Apr 9 2020 14:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 110.99814 * 2 1 4 4 C 1.50701 * 109.47093 * 180.02562 * 3 2 1 5 5 C 1.38263 * 119.94200 * 269.72774 * 4 3 2 6 6 C 1.38147 * 120.05661 * 179.72684 * 5 4 3 7 7 C 1.38736 * 119.93931 * 0.56802 * 6 5 4 8 8 O 1.35903 * 120.05548 * 179.68910 * 7 6 5 9 9 C 1.42894 * 117.00086 * 0.02562 * 8 7 6 10 10 C 1.50703 * 109.47223 * 180.02562 * 9 8 7 11 11 H 1.07999 * 119.99973 * 359.97438 * 10 9 8 12 12 C 1.37875 * 119.99689 * 180.02562 * 10 9 8 13 13 N 1.31512 * 120.00311 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 119.99603 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46947 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47157 * 119.99450 * 14 12 10 17 17 H 1.48499 * 109.46892 * 239.99448 * 14 12 10 18 18 C 1.38732 * 119.88976 * 359.70175 * 7 6 5 19 19 C 1.38149 * 119.94472 * 0.02562 * 18 7 6 20 20 H 1.08992 * 109.47459 * 59.99744 * 1 2 3 21 21 H 1.09004 * 109.47040 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47033 * 299.99847 * 1 2 3 23 23 H 1.00900 * 110.99554 * 236.04746 * 2 1 3 24 24 H 1.09000 * 109.47220 * 300.00282 * 3 2 1 25 25 H 1.09009 * 109.47274 * 60.00203 * 3 2 1 26 26 H 1.08003 * 119.97547 * 359.97438 * 5 4 3 27 27 H 1.07997 * 120.03484 * 180.25475 * 6 5 4 28 28 H 1.09009 * 109.47103 * 300.00554 * 9 8 7 29 29 H 1.08999 * 109.46869 * 60.00184 * 9 8 7 30 30 H 0.97003 * 119.99970 * 180.02562 * 13 12 10 31 31 H 1.08003 * 120.02903 * 179.97438 * 18 7 6 32 32 H 1.07995 * 119.97750 * 179.97438 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5019 1.3312 -0.0006 5 6 4.1924 1.3184 1.1972 6 6 5.5732 1.2759 1.1994 7 6 6.2674 1.2580 -0.0017 8 8 7.6259 1.2226 -0.0023 9 6 8.2750 1.2048 1.2706 10 6 9.7684 1.1666 1.0725 11 1 10.1807 1.1565 0.0744 12 6 10.6084 1.1436 2.1656 13 7 10.1064 1.1554 3.3811 14 14 12.4597 1.0970 1.9201 15 1 12.7662 1.0909 0.4671 16 1 13.0729 2.2934 2.5508 17 1 13.0114 -0.1308 2.5472 18 6 5.5723 1.2767 -1.2022 19 6 4.1913 1.3135 -1.1990 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8306 -0.5261 -0.7814 24 1 1.6459 1.8948 -0.8899 25 1 1.6459 1.8948 0.8901 26 1 3.6518 1.3375 2.1319 27 1 6.1121 1.2616 2.1352 28 1 8.0055 2.1018 1.8284 29 1 7.9592 0.3224 1.8271 30 1 10.6974 1.1396 4.1501 31 1 6.1104 1.2632 -2.1386 32 1 3.6497 1.3284 -2.1332 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234419941.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:34 Heat of formation + Delta-G solvation = -43.672011 kcal Electronic energy + Delta-G solvation = -14122.401437 eV Core-core repulsion = 11660.872905 eV Total energy + Delta-G solvation = -2461.528532 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.95070 -38.76822 -36.48351 -35.05652 -32.06481 -31.65848 -29.74221 -27.07520 -25.40541 -24.24373 -23.32039 -21.84577 -19.19030 -18.50444 -17.20797 -17.05460 -16.48860 -16.24639 -15.87298 -15.42093 -15.12139 -14.70088 -14.44365 -14.12216 -13.57899 -13.55816 -13.03007 -12.87131 -12.83182 -12.60731 -12.31295 -12.10360 -11.86219 -11.78483 -11.32202 -10.73375 -9.92131 -9.38141 -8.94443 -8.40977 -6.55852 0.43208 0.49143 1.38642 1.40418 1.55168 2.26874 2.75124 2.78333 2.93703 3.55684 3.89960 3.96538 4.03136 4.32992 4.43364 4.54770 4.58002 4.67465 4.73233 4.82338 4.86440 4.94432 5.08460 5.13235 5.35130 5.44509 5.55959 5.66865 5.82303 5.94560 6.08848 6.47366 6.49551 6.79248 7.16671 8.71667 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.073075 B = 0.004779 C = 0.004581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.078194 B = 5857.297358 C = 6110.800661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.708 5.708 3 C 0.113 3.887 4 C -0.133 4.133 5 C -0.060 4.060 6 C -0.230 4.230 7 C 0.106 3.894 8 O -0.339 6.339 9 C 0.212 3.788 10 C -0.559 4.559 11 H 0.067 0.933 12 C 0.011 3.989 13 N -0.926 5.926 14 Si 0.990 3.010 15 H -0.263 1.263 16 H -0.269 1.269 17 H -0.269 1.269 18 C -0.170 4.170 19 C -0.065 4.065 20 H 0.032 0.968 21 H 0.074 0.926 22 H 0.064 0.936 23 H 0.346 0.654 24 H 0.055 0.945 25 H 0.081 0.919 26 H 0.135 0.865 27 H 0.106 0.894 28 H 0.000 1.000 29 H -0.001 1.001 30 H 0.274 0.726 31 H 0.136 0.864 32 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.358 -0.062 -7.344 17.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.340 5.340 3 C -0.015 4.015 4 C -0.133 4.133 5 C -0.079 4.079 6 C -0.249 4.249 7 C 0.060 3.940 8 O -0.253 6.253 9 C 0.139 3.861 10 C -0.596 4.596 11 H 0.085 0.915 12 C -0.189 4.189 13 N -0.564 5.564 14 Si 0.812 3.188 15 H -0.187 1.187 16 H -0.194 1.194 17 H -0.194 1.194 18 C -0.189 4.189 19 C -0.083 4.083 20 H 0.050 0.950 21 H 0.093 0.907 22 H 0.083 0.917 23 H 0.164 0.836 24 H 0.073 0.927 25 H 0.099 0.901 26 H 0.153 0.847 27 H 0.125 0.875 28 H 0.018 0.982 29 H 0.017 0.983 30 H 0.083 0.917 31 H 0.154 0.846 32 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -16.155 -0.133 -6.623 17.461 hybrid contribution 0.896 0.217 -0.184 0.940 sum -15.259 0.084 -6.807 16.709 Atomic orbital electron populations 1.22239 0.86452 1.02568 1.00864 1.60415 1.08777 1.13893 1.50907 1.20752 0.88585 0.90138 1.02028 1.19841 0.96232 1.04815 0.92446 1.20956 0.91767 0.95970 0.99171 1.21403 0.96551 1.09994 0.96961 1.19766 0.83255 0.95426 0.95537 1.86028 1.16491 1.87488 1.35324 1.20163 0.92241 0.94743 0.78961 1.21364 0.90228 1.53631 0.94380 0.91489 1.26000 1.05557 0.93367 0.93946 1.70068 1.38003 1.49508 0.98860 0.85031 0.76356 0.78460 0.78924 1.18676 1.19400 1.19424 1.20651 0.94865 1.07829 0.95531 1.21094 0.91874 0.96504 0.98810 0.94987 0.90709 0.91666 0.83578 0.92672 0.90077 0.84668 0.87550 0.98230 0.98302 0.91682 0.84628 0.82274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.70 127.69 1.37 1.76 16 2 N -0.71 -13.54 6.84 -541.22 -3.70 -17.25 16 3 C 0.11 2.22 5.81 85.56 0.50 2.72 16 4 C -0.13 -3.53 5.39 -19.85 -0.11 -3.64 16 5 C -0.06 -1.95 9.69 22.25 0.22 -1.73 16 6 C -0.23 -9.49 9.04 22.37 0.20 -9.29 16 7 C 0.11 4.65 6.69 22.51 0.15 4.80 16 8 O -0.34 -17.86 10.12 -92.46 -0.94 -18.80 16 9 C 0.21 12.30 4.49 71.24 0.32 12.62 16 10 C -0.56 -33.62 9.43 25.60 0.24 -33.38 16 11 H 0.07 3.97 7.81 -2.91 -0.02 3.95 16 12 C 0.01 0.62 5.46 84.65 0.46 1.08 16 13 N -0.93 -55.45 13.29 21.45 0.28 -55.17 16 14 Si 0.99 44.09 29.54 68.60 2.03 46.12 16 15 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 16 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 17 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 18 C -0.17 -5.85 9.99 22.37 0.22 -5.63 16 19 C -0.06 -1.70 9.69 22.25 0.22 -1.49 16 20 H 0.03 0.37 8.14 -2.39 -0.02 0.35 16 21 H 0.07 0.92 8.14 -2.38 -0.02 0.91 16 22 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.35 6.16 8.81 -89.69 -0.79 5.37 16 24 H 0.06 0.88 8.08 -2.39 -0.02 0.86 16 25 H 0.08 1.54 8.08 -2.38 -0.02 1.52 16 26 H 0.14 3.82 8.06 -2.91 -0.02 3.79 16 27 H 0.11 4.84 6.30 -2.91 -0.02 4.82 16 28 H 0.00 0.00 7.66 -2.38 -0.02 -0.02 16 29 H 0.00 -0.05 7.66 -2.39 -0.02 -0.07 16 30 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 31 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 32 H 0.16 2.87 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -67.35 278.82 1.77 -65.58 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 0.32 Total: 11.69 kcal Atomic # 6 Polarization: -35.97 SS G_CDS: 3.79 Total: -32.18 kcal Atomic # 7 Polarization: -68.99 SS G_CDS: -3.42 Total: -72.41 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.94 Total: -18.80 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -67.35 1.77 -65.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234419941.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.905 kcal (2) G-P(sol) polarization free energy of solvation -67.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds