Wall clock time and date at job start Thu Apr 9 2020 14:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52994 * 109.57250 * 172.57423 * 3 2 1 5 5 C 1.50700 * 109.47467 * 300.15484 * 4 3 2 6 6 H 1.08001 * 119.99701 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00395 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99579 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00153 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47239 * 89.99974 * 9 7 5 11 11 H 1.48499 * 109.47354 * 209.99637 * 9 7 5 12 12 H 1.48505 * 109.47367 * 330.00015 * 9 7 5 13 13 C 1.53244 * 109.52123 * 292.73342 * 3 2 1 14 14 C 1.53245 * 108.72232 * 64.38339 * 13 3 2 15 15 C 1.50589 * 109.15941 * 55.52166 * 14 13 3 16 16 O 1.21234 * 119.35729 * 150.90667 * 15 14 13 17 17 N 1.34142 * 121.28114 * 330.88157 * 15 14 13 18 18 C 1.34139 * 122.59011 * 0.56958 * 17 15 14 19 19 O 1.21221 * 119.36280 * 179.45194 * 18 17 15 20 20 H 1.08993 * 109.47354 * 60.16119 * 4 3 2 21 21 H 1.09009 * 109.46980 * 180.15968 * 4 3 2 22 22 H 0.97003 * 120.00041 * 180.02562 * 8 7 5 23 23 H 1.09002 * 109.62127 * 304.56504 * 13 3 2 24 24 H 1.08998 * 109.62013 * 184.20112 * 13 3 2 25 25 H 1.08996 * 109.52357 * 175.42772 * 14 13 3 26 26 H 1.09004 * 109.51992 * 295.62002 * 14 13 3 27 27 H 0.97003 * 118.70160 * 180.59446 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1199 1.4303 -0.1863 5 6 2.6155 1.9778 -1.4966 6 1 1.9918 1.3672 -2.1326 7 6 2.9502 3.2582 -1.8834 8 7 3.7101 4.0015 -1.1091 9 14 2.3244 3.9370 -3.5072 10 1 1.0182 4.6101 -3.2919 11 1 3.3030 4.9162 -4.0446 12 1 2.1542 2.8246 -4.4762 13 6 3.1204 -0.5573 1.3321 14 6 2.6940 -2.0247 1.4474 15 6 3.1930 -2.7803 0.2442 16 8 3.4483 -3.9609 0.3476 17 7 3.3600 -2.1726 -0.9400 18 6 3.1078 -0.8681 -1.1245 19 8 3.2886 -0.3766 -2.2177 20 1 2.7596 2.0547 0.6312 21 1 4.2100 1.4285 -0.1889 22 1 3.9454 4.9024 -1.3810 23 1 2.6934 0.0138 2.1566 24 1 4.2077 -0.4885 1.3638 25 1 3.1203 -2.4579 2.3522 26 1 1.6065 -2.0857 1.4906 27 1 3.6752 -2.6972 -1.6925 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075580074.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:14:48 Heat of formation + Delta-G solvation = -48.182531 kcal Electronic energy + Delta-G solvation = -15083.787539 eV Core-core repulsion = 12420.804411 eV Total energy + Delta-G solvation = -2662.983128 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.079 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.42407 -38.76093 -36.78048 -34.96599 -34.18831 -32.66863 -30.38928 -26.54025 -23.92466 -23.32926 -22.02602 -20.44275 -17.61547 -17.35163 -16.50030 -15.97811 -15.63594 -14.69402 -14.58747 -14.31682 -13.71658 -13.64280 -12.75541 -12.71023 -12.38403 -12.30521 -11.86623 -11.47400 -11.35520 -11.14939 -10.73619 -10.55486 -10.23065 -10.13478 -9.95862 -9.49806 -9.09149 -8.42145 -6.07816 -4.06300 1.70763 2.70962 2.97398 3.18998 3.32427 3.33769 3.39440 3.46802 4.06022 4.39144 4.44383 4.71729 4.75297 4.81041 5.23990 5.31780 5.59106 5.74156 5.89019 6.00479 6.22058 7.02849 7.22154 7.24348 7.54245 7.87883 7.95851 8.11088 8.16041 8.94210 9.56818 11.03673 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.040541 B = 0.009087 C = 0.008766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.501294 B = 3080.721464 C = 3193.517842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C 0.242 3.758 3 C 0.026 3.974 4 C 0.043 3.957 5 C -0.507 4.507 6 H 0.065 0.935 7 C 0.061 3.939 8 N -0.898 5.898 9 Si 0.892 3.108 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.272 1.272 13 C -0.116 4.116 14 C -0.148 4.148 15 C 0.528 3.472 16 O -0.518 6.518 17 N -0.677 5.677 18 C 0.524 3.476 19 O -0.431 6.431 20 H 0.044 0.956 21 H 0.045 0.955 22 H 0.262 0.738 23 H 0.102 0.898 24 H 0.099 0.901 25 H 0.118 0.882 26 H 0.106 0.894 27 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.190 -9.214 5.582 10.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.108 5.108 2 C -0.076 4.076 3 C 0.019 3.981 4 C 0.005 3.995 5 C -0.545 4.545 6 H 0.083 0.917 7 C -0.140 4.140 8 N -0.537 5.537 9 Si 0.720 3.280 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.197 1.197 13 C -0.155 4.155 14 C -0.188 4.188 15 C 0.317 3.683 16 O -0.393 6.393 17 N -0.344 5.344 18 C 0.308 3.692 19 O -0.295 6.295 20 H 0.062 0.938 21 H 0.063 0.937 22 H 0.071 0.929 23 H 0.121 0.879 24 H 0.117 0.883 25 H 0.136 0.864 26 H 0.124 0.876 27 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -0.299 -9.231 5.189 10.594 hybrid contribution 0.290 0.313 -1.309 1.377 sum -0.009 -8.918 3.880 9.726 Atomic orbital electron populations 1.81097 1.12277 1.09330 1.08084 1.28081 0.93782 0.92469 0.93243 1.18853 0.83564 1.02332 0.93354 1.19312 0.97798 0.82945 0.99484 1.21101 1.31437 0.98542 1.03419 0.91684 1.24869 0.95103 0.96864 0.97158 1.69922 1.36852 1.09631 1.37324 0.86567 0.78459 0.78810 0.84155 1.20798 1.21187 1.19665 1.21957 1.03500 0.93487 0.96531 1.22029 1.03985 0.96236 0.96515 1.20946 0.75291 0.87435 0.84603 1.90750 1.47723 1.16029 1.84756 1.45041 1.63048 1.12108 1.14168 1.20438 0.77394 0.80736 0.90591 1.90900 1.43454 1.70405 1.24734 0.93806 0.93685 0.92878 0.87938 0.88293 0.86412 0.87577 0.75068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -8.64 18.54 42.15 0.78 -7.86 15 2 C 0.24 4.51 11.84 -20.76 -0.25 4.26 15 3 C 0.03 0.44 0.50 -158.36 -0.08 0.36 15 4 C 0.04 0.93 3.95 -27.89 -0.11 0.82 15 5 C -0.51 -13.33 6.92 -34.44 -0.24 -13.56 15 6 H 0.07 1.77 6.21 -52.49 -0.33 1.45 15 7 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 8 N -0.90 -25.28 13.29 55.43 0.74 -24.54 15 9 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 15 10 H -0.28 -6.84 7.11 56.52 0.40 -6.43 15 11 H -0.29 -6.88 7.11 56.52 0.40 -6.47 15 12 H -0.27 -6.71 7.11 56.52 0.40 -6.31 15 13 C -0.12 -1.35 4.82 -26.48 -0.13 -1.48 15 14 C -0.15 -1.53 5.80 -27.81 -0.16 -1.70 15 15 C 0.53 6.94 7.74 -11.32 -0.09 6.85 15 16 O -0.52 -8.03 17.88 5.60 0.10 -7.93 15 17 N -0.68 -9.46 5.09 -11.74 -0.06 -9.52 15 18 C 0.52 9.12 6.61 -11.30 -0.07 9.05 15 19 O -0.43 -9.27 14.59 5.61 0.08 -9.19 15 20 H 0.04 0.98 8.14 -51.93 -0.42 0.56 15 21 H 0.05 1.01 8.14 -51.92 -0.42 0.59 15 22 H 0.26 7.06 8.31 -40.82 -0.34 6.72 15 23 H 0.10 1.02 8.14 -51.93 -0.42 0.60 15 24 H 0.10 1.01 8.14 -51.93 -0.42 0.59 15 25 H 0.12 0.92 8.14 -51.93 -0.42 0.50 15 26 H 0.11 1.08 7.47 -51.93 -0.39 0.69 15 27 H 0.41 5.17 8.79 -40.82 -0.36 4.81 15 LS Contribution 245.36 15.07 3.70 3.70 Total: -1.00 -31.84 245.36 -3.23 -35.07 By element: Atomic # 1 Polarization: -0.39 SS G_CDS: -2.32 Total: -2.71 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: -1.22 Total: 6.20 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: 1.46 Total: -41.93 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: 0.18 Total: -17.11 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -31.84 -3.23 -35.07 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075580074.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.112 kcal (2) G-P(sol) polarization free energy of solvation -31.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds