Wall clock time and date at job start Thu Apr 9 2020 14:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47473 * 2 1 4 4 H 1.09000 * 109.47708 * 176.76717 * 3 2 1 5 5 C 1.50702 * 109.47172 * 56.76984 * 3 2 1 6 6 H 1.07996 * 119.99973 * 240.00364 * 5 3 2 7 7 C 1.37873 * 119.99934 * 60.00082 * 5 3 2 8 8 N 1.31520 * 120.00162 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99999 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47329 * 60.00256 * 9 7 5 11 11 H 1.48508 * 109.47365 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47517 * 299.99956 * 9 7 5 13 13 N 1.46903 * 109.47134 * 296.77089 * 3 2 1 14 14 C 1.46897 * 111.00119 * 275.04821 * 13 3 2 15 15 H 1.08993 * 110.51932 * 37.58035 * 14 13 3 16 16 C 1.54835 * 110.58113 * 274.79432 * 14 13 3 17 17 C 1.56185 * 103.68800 * 241.45085 * 16 14 13 18 18 H 1.09000 * 116.29754 * 164.01370 * 17 16 14 19 19 C 1.53364 * 104.07548 * 293.35766 * 17 16 14 20 20 C 1.31795 * 108.42889 * 71.21947 * 19 17 16 21 21 C 1.53394 * 108.40278 * 358.31027 * 20 19 17 22 22 H 1.09000 * 116.68164 * 161.11473 * 21 20 19 23 23 C 1.57258 * 101.22020 * 36.57101 * 17 16 14 24 24 H 1.08998 * 109.47296 * 54.63584 * 1 2 3 25 25 H 1.08999 * 109.47283 * 174.64050 * 1 2 3 26 26 H 1.09007 * 109.46921 * 294.63809 * 1 2 3 27 27 H 1.09005 * 109.46818 * 239.99624 * 2 1 3 28 28 H 1.09002 * 109.47076 * 120.00116 * 2 1 3 29 29 H 0.96997 * 119.99655 * 179.97438 * 8 7 5 30 30 H 1.00904 * 111.00181 * 151.09028 * 13 3 2 31 31 H 1.09003 * 110.57714 * 122.89899 * 16 14 13 32 32 H 1.09004 * 110.58397 * 0.02562 * 16 14 13 33 33 H 1.08002 * 125.78330 * 250.94991 * 19 17 16 34 34 H 1.07992 * 125.79062 * 179.71351 * 20 19 17 35 35 H 1.08995 * 112.52639 * 58.88974 * 23 17 16 36 36 H 1.09003 * 112.52769 * 186.75813 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1285 1.4430 0.0580 5 6 1.4735 2.1756 1.1885 6 1 0.8592 3.0513 1.0401 7 6 1.7393 1.7283 2.4653 8 7 2.4878 0.6621 2.6460 9 14 1.0364 2.6367 3.9384 10 1 -0.4464 2.6354 3.8594 11 1 1.4665 1.9602 5.1885 12 1 1.5309 4.0369 3.9387 13 7 1.6152 2.1120 -1.2366 14 6 2.5577 1.8442 -2.3309 15 1 2.9240 0.8190 -2.2774 16 6 3.7373 2.8464 -2.2909 17 6 3.6286 3.5998 -3.6547 18 1 4.1875 4.5320 -3.7373 19 6 3.9422 2.5236 -4.7014 20 6 2.9273 1.6844 -4.7530 21 6 1.8859 2.1193 -3.7140 22 1 0.8744 1.7348 -3.8443 23 6 2.0685 3.6952 -3.8280 24 1 -0.3634 0.5948 -0.8380 25 1 -0.3634 -1.0232 -0.0960 26 1 -0.3633 0.4284 0.9342 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.6751 0.3477 3.5443 30 1 1.5032 3.1041 -1.0904 31 1 4.6875 2.3170 -2.2202 32 1 3.6220 3.5409 -1.4587 33 1 4.8403 2.4660 -5.2983 34 1 2.8526 0.8226 -5.3996 35 1 1.5886 4.2255 -3.0055 36 1 1.7800 4.0965 -4.7996 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698719180.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:07 Heat of formation + Delta-G solvation = 26.929101 kcal Electronic energy + Delta-G solvation = -15597.123804 eV Core-core repulsion = 13274.489861 eV Total energy + Delta-G solvation = -2322.633943 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.21388 -35.79235 -32.43676 -30.73560 -28.99089 -27.89589 -26.94614 -25.21060 -23.12969 -20.75510 -19.87147 -18.74034 -17.65572 -16.43646 -16.04262 -15.15085 -14.49049 -13.87448 -13.56377 -13.00290 -12.57907 -12.33210 -11.90076 -11.80057 -11.26425 -11.05682 -11.01930 -10.91448 -10.84614 -10.75804 -10.44401 -10.30687 -9.99663 -9.91095 -9.62442 -9.31853 -8.79113 -8.66330 -8.41997 -7.13250 -5.99284 -4.04286 2.45221 3.31681 3.36569 3.39137 4.41912 4.82032 4.83009 5.00495 5.22308 5.32068 5.48601 5.59047 5.65488 5.74955 5.92517 6.02773 6.13059 6.24873 6.34230 6.44201 6.49568 6.57581 6.59871 6.73624 6.75599 6.90669 7.19259 7.27904 7.39785 7.55361 7.78057 7.83610 7.89135 8.30357 8.45744 8.73211 9.05838 9.60241 11.06829 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.040998 B = 0.007721 C = 0.007244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.795545 B = 3625.492671 C = 3864.495550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.101 4.101 3 C 0.217 3.783 4 H 0.000 1.000 5 C -0.512 4.512 6 H 0.057 0.943 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.892 3.108 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.279 1.279 13 N -0.676 5.676 14 C 0.095 3.905 15 H 0.074 0.926 16 C -0.147 4.147 17 C -0.080 4.080 18 H 0.090 0.910 19 C -0.173 4.173 20 C -0.165 4.165 21 C -0.064 4.064 22 H 0.100 0.900 23 C -0.120 4.120 24 H 0.046 0.954 25 H 0.011 0.989 26 H 0.051 0.949 27 H 0.009 0.991 28 H 0.083 0.917 29 H 0.260 0.740 30 H 0.330 0.670 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.074 0.926 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.060 3.186 -11.127 11.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.140 4.140 3 C 0.110 3.890 4 H 0.018 0.982 5 C -0.550 4.550 6 H 0.076 0.924 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.720 3.280 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.306 5.306 14 C -0.017 4.017 15 H 0.092 0.908 16 C -0.186 4.186 17 C -0.098 4.098 18 H 0.108 0.892 19 C -0.191 4.191 20 C -0.183 4.183 21 C -0.083 4.083 22 H 0.118 0.882 23 C -0.157 4.157 24 H 0.065 0.935 25 H 0.030 0.970 26 H 0.071 0.929 27 H 0.028 0.972 28 H 0.101 0.899 29 H 0.070 0.930 30 H 0.148 0.852 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.093 0.907 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.698 2.544 -11.104 11.413 hybrid contribution 0.611 0.854 1.101 1.521 sum 1.309 3.398 -10.003 10.645 Atomic orbital electron populations 1.21433 0.97521 0.97031 1.01568 1.21422 0.95116 0.98328 0.99110 1.19091 0.93441 0.91572 0.84933 0.98234 1.21144 1.31533 1.11919 0.90442 0.92450 1.24876 0.95149 0.95028 0.98769 1.69887 1.37779 1.23332 1.21798 0.86662 0.79559 0.79776 0.82004 1.20224 1.21386 1.20442 1.60640 1.47127 1.15492 1.07347 1.22640 0.90138 0.97899 0.91015 0.90783 1.23452 1.00135 0.98990 0.96028 1.22881 0.96326 0.96258 0.94367 0.89214 1.24042 0.98315 0.98262 0.98473 1.24142 0.96988 0.98932 0.98227 1.23235 0.97379 0.94405 0.93277 0.88218 1.24330 0.94357 0.96159 1.00882 0.93466 0.96977 0.92945 0.97238 0.89863 0.92969 0.85168 0.92229 0.91102 0.86362 0.86197 0.90720 0.91450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.70 9.44 37.16 0.35 -2.35 16 2 C -0.10 -2.48 5.54 -26.74 -0.15 -2.62 16 3 C 0.22 5.36 2.17 -68.87 -0.15 5.21 16 4 H 0.00 0.00 7.70 -51.93 -0.40 -0.40 16 5 C -0.51 -13.66 7.28 -34.44 -0.25 -13.91 16 6 H 0.06 1.52 7.62 -52.49 -0.40 1.12 16 7 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 8 N -0.89 -25.21 11.35 55.43 0.63 -24.58 16 9 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 N -0.68 -14.00 5.38 -98.16 -0.53 -14.53 16 14 C 0.09 1.71 2.41 -65.03 -0.16 1.55 16 15 H 0.07 1.47 7.16 -51.93 -0.37 1.10 16 16 C -0.15 -2.44 5.71 -24.06 -0.14 -2.58 16 17 C -0.08 -1.11 5.20 -86.41 -0.45 -1.56 16 18 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 19 C -0.17 -2.29 10.12 -34.86 -0.35 -2.64 16 20 C -0.16 -2.25 10.18 -34.84 -0.35 -2.61 16 21 C -0.06 -0.98 4.96 -85.33 -0.42 -1.40 16 22 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 23 C -0.12 -1.66 6.78 -21.04 -0.14 -1.80 16 24 H 0.05 1.04 7.55 -51.93 -0.39 0.64 16 25 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 26 H 0.05 1.28 7.33 -51.93 -0.38 0.90 16 27 H 0.01 0.21 7.40 -51.93 -0.38 -0.17 16 28 H 0.08 2.26 6.16 -51.93 -0.32 1.94 16 29 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.33 6.76 7.12 -39.29 -0.28 6.48 16 31 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 32 H 0.07 1.27 7.71 -51.93 -0.40 0.87 16 33 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 35 H 0.07 1.07 7.49 -51.93 -0.39 0.68 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 280.99 15.07 4.23 4.23 Total: -1.00 -27.20 280.99 -8.80 -36.00 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -5.81 Total: 5.78 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: -2.31 Total: -23.07 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 0.10 Total: -39.11 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -27.20 -8.80 -36.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698719180.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.932 kcal (2) G-P(sol) polarization free energy of solvation -27.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds