Wall clock time and date at job start Thu Apr 9 2020 14:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47473 * 2 1 4 4 H 1.09000 * 109.47708 * 176.76717 * 3 2 1 5 5 C 1.50702 * 109.47172 * 56.76984 * 3 2 1 6 6 H 1.07996 * 119.99973 * 240.00364 * 5 3 2 7 7 C 1.37873 * 119.99934 * 60.00082 * 5 3 2 8 8 N 1.31520 * 120.00162 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99999 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47329 * 60.00256 * 9 7 5 11 11 H 1.48508 * 109.47365 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47517 * 299.99956 * 9 7 5 13 13 N 1.46903 * 109.47134 * 296.77089 * 3 2 1 14 14 C 1.46897 * 111.00119 * 275.04821 * 13 3 2 15 15 H 1.08993 * 110.51932 * 37.58035 * 14 13 3 16 16 C 1.54835 * 110.58113 * 274.79432 * 14 13 3 17 17 C 1.56185 * 103.68800 * 241.45085 * 16 14 13 18 18 H 1.09000 * 116.29754 * 164.01370 * 17 16 14 19 19 C 1.53364 * 104.07548 * 293.35766 * 17 16 14 20 20 C 1.31795 * 108.42889 * 71.21947 * 19 17 16 21 21 C 1.53394 * 108.40278 * 358.31027 * 20 19 17 22 22 H 1.09000 * 116.68164 * 161.11473 * 21 20 19 23 23 C 1.57258 * 101.22020 * 36.57101 * 17 16 14 24 24 H 1.08998 * 109.47296 * 54.63584 * 1 2 3 25 25 H 1.08999 * 109.47283 * 174.64050 * 1 2 3 26 26 H 1.09007 * 109.46921 * 294.63809 * 1 2 3 27 27 H 1.09005 * 109.46818 * 239.99624 * 2 1 3 28 28 H 1.09002 * 109.47076 * 120.00116 * 2 1 3 29 29 H 0.96997 * 119.99655 * 179.97438 * 8 7 5 30 30 H 1.00904 * 111.00181 * 151.09028 * 13 3 2 31 31 H 1.09003 * 110.57714 * 122.89899 * 16 14 13 32 32 H 1.09004 * 110.58397 * 0.02562 * 16 14 13 33 33 H 1.08002 * 125.78330 * 250.94991 * 19 17 16 34 34 H 1.07992 * 125.79062 * 179.71351 * 20 19 17 35 35 H 1.08995 * 112.52639 * 58.88974 * 23 17 16 36 36 H 1.09003 * 112.52769 * 186.75813 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1285 1.4430 0.0580 5 6 1.4735 2.1756 1.1885 6 1 0.8592 3.0513 1.0401 7 6 1.7393 1.7283 2.4653 8 7 2.4878 0.6621 2.6460 9 14 1.0364 2.6367 3.9384 10 1 -0.4464 2.6354 3.8594 11 1 1.4665 1.9602 5.1885 12 1 1.5309 4.0369 3.9387 13 7 1.6152 2.1120 -1.2366 14 6 2.5577 1.8442 -2.3309 15 1 2.9240 0.8190 -2.2774 16 6 3.7373 2.8464 -2.2909 17 6 3.6286 3.5998 -3.6547 18 1 4.1875 4.5320 -3.7373 19 6 3.9422 2.5236 -4.7014 20 6 2.9273 1.6844 -4.7530 21 6 1.8859 2.1193 -3.7140 22 1 0.8744 1.7348 -3.8443 23 6 2.0685 3.6952 -3.8280 24 1 -0.3634 0.5948 -0.8380 25 1 -0.3634 -1.0232 -0.0960 26 1 -0.3633 0.4284 0.9342 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.6751 0.3477 3.5443 30 1 1.5032 3.1041 -1.0904 31 1 4.6875 2.3170 -2.2202 32 1 3.6220 3.5409 -1.4587 33 1 4.8403 2.4660 -5.2983 34 1 2.8526 0.8226 -5.3996 35 1 1.5886 4.2255 -3.0055 36 1 1.7800 4.0965 -4.7996 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698719180.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:07 Heat of formation + Delta-G solvation = 12.170020 kcal Electronic energy + Delta-G solvation = -15597.763806 eV Core-core repulsion = 13274.489861 eV Total energy + Delta-G solvation = -2323.273945 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.45877 -37.63109 -34.30266 -32.57015 -30.30586 -29.27157 -28.40522 -26.97961 -25.07764 -22.21188 -21.16988 -20.47777 -18.91455 -18.20453 -17.29390 -16.99587 -16.09345 -15.56926 -15.24127 -14.85301 -14.03418 -13.89851 -13.64529 -13.46568 -12.84826 -12.73484 -12.51271 -12.39878 -12.24851 -12.16554 -12.12934 -11.90974 -11.69137 -11.39479 -11.35545 -11.11451 -10.76588 -10.53158 -9.81705 -8.86954 -8.08613 -6.20483 1.38441 1.42297 1.43515 1.50639 2.42932 3.20137 3.56366 3.63758 3.75065 3.94920 4.21146 4.35210 4.44016 4.50202 4.61899 4.68834 4.79375 4.80728 4.91676 4.97185 5.00016 5.14127 5.18997 5.24872 5.32061 5.35575 5.45282 5.56527 5.59733 5.72691 5.83300 5.92306 6.14383 6.28534 6.55194 6.85207 7.08145 7.48326 8.96594 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.040998 B = 0.007721 C = 0.007244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.795545 B = 3625.492671 C = 3864.495550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.097 4.097 3 C 0.226 3.774 4 H -0.039 1.039 5 C -0.522 4.522 6 H 0.057 0.943 7 C 0.017 3.983 8 N -0.918 5.918 9 Si 0.953 3.047 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.272 1.272 13 N -0.670 5.670 14 C 0.090 3.910 15 H 0.050 0.950 16 C -0.146 4.146 17 C -0.074 4.074 18 H 0.110 0.890 19 C -0.167 4.167 20 C -0.171 4.171 21 C -0.065 4.065 22 H 0.098 0.902 23 C -0.114 4.114 24 H 0.054 0.946 25 H 0.033 0.967 26 H 0.031 0.969 27 H 0.016 0.984 28 H 0.054 0.946 29 H 0.260 0.740 30 H 0.331 0.669 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.142 0.858 34 H 0.138 0.862 35 H 0.066 0.934 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.598 4.131 -12.529 13.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.136 4.136 3 C 0.117 3.883 4 H -0.022 1.022 5 C -0.561 4.561 6 H 0.075 0.925 7 C -0.183 4.183 8 N -0.557 5.557 9 Si 0.779 3.221 10 H -0.196 1.196 11 H -0.213 1.213 12 H -0.198 1.198 13 N -0.299 5.299 14 C -0.021 4.021 15 H 0.068 0.932 16 C -0.185 4.185 17 C -0.092 4.092 18 H 0.128 0.872 19 C -0.185 4.185 20 C -0.190 4.190 21 C -0.083 4.083 22 H 0.116 0.884 23 C -0.151 4.151 24 H 0.073 0.927 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.035 0.965 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.149 0.851 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.160 0.840 34 H 0.156 0.844 35 H 0.085 0.915 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.231 3.499 -12.528 13.009 hybrid contribution 0.797 0.541 1.513 1.794 sum 1.028 4.040 -11.015 11.777 Atomic orbital electron populations 1.21288 0.95908 0.98385 1.00694 1.21303 0.96422 0.97880 0.97985 1.18839 0.90942 0.92130 0.86373 1.02153 1.21418 1.31321 1.11969 0.91359 0.92473 1.25626 0.95466 0.95740 1.01425 1.70030 1.38882 1.24629 1.22201 0.85691 0.78989 0.78738 0.78696 1.19626 1.21265 1.19763 1.60586 1.47832 1.15234 1.06263 1.22682 0.90704 0.96970 0.91787 0.93164 1.23345 0.99039 0.98564 0.97582 1.22924 0.96780 0.97067 0.92442 0.87156 1.24251 0.98903 0.97387 0.97959 1.24234 0.96568 0.99876 0.98275 1.23178 0.97608 0.95879 0.91680 0.88373 1.24319 0.94188 0.94835 1.01763 0.92657 0.94813 0.94992 0.96510 0.92760 0.93104 0.85064 0.93007 0.92898 0.83992 0.84426 0.91513 0.89261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.77 9.44 71.98 0.68 -4.09 16 2 C -0.10 -4.85 5.54 30.59 0.17 -4.68 16 3 C 0.23 11.45 2.17 44.17 0.10 11.54 16 4 H -0.04 -2.25 7.70 -2.39 -0.02 -2.27 16 5 C -0.52 -28.28 7.28 25.60 0.19 -28.09 16 6 H 0.06 3.04 7.62 -2.91 -0.02 3.01 16 7 C 0.02 0.91 5.30 84.65 0.45 1.36 16 8 N -0.92 -53.24 11.35 21.45 0.24 -52.99 16 9 Si 0.95 43.62 29.54 68.60 2.03 45.64 16 10 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 11 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 13 N -0.67 -28.02 5.38 -464.47 -2.50 -30.52 16 14 C 0.09 3.24 2.41 46.65 0.11 3.35 16 15 H 0.05 2.04 7.16 -2.39 -0.02 2.02 16 16 C -0.15 -4.85 5.71 32.33 0.18 -4.67 16 17 C -0.07 -1.88 5.20 -8.07 -0.04 -1.92 16 18 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 19 C -0.17 -3.92 10.12 25.79 0.26 -3.66 16 20 C -0.17 -4.26 10.18 25.80 0.26 -4.00 16 21 C -0.06 -1.87 4.96 -7.37 -0.04 -1.91 16 22 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 23 C -0.11 -2.89 6.78 34.28 0.23 -2.66 16 24 H 0.05 2.38 7.55 -2.39 -0.02 2.36 16 25 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.03 1.54 7.33 -2.38 -0.02 1.53 16 27 H 0.02 0.77 7.40 -2.38 -0.02 0.76 16 28 H 0.05 3.03 6.16 -2.39 -0.01 3.02 16 29 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 30 H 0.33 13.67 7.12 -89.69 -0.64 13.04 16 31 H 0.05 1.77 8.08 -2.39 -0.02 1.75 16 32 H 0.05 1.93 7.71 -2.39 -0.02 1.91 16 33 H 0.14 2.69 8.06 -2.91 -0.02 2.66 16 34 H 0.14 2.92 8.06 -2.91 -0.02 2.90 16 35 H 0.07 1.81 7.49 -2.39 -0.02 1.79 16 36 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -58.50 280.99 2.73 -55.77 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: 0.41 Total: 21.52 kcal Atomic # 6 Polarization: -41.97 SS G_CDS: 2.56 Total: -39.42 kcal Atomic # 7 Polarization: -81.26 SS G_CDS: -2.25 Total: -83.51 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -58.50 2.73 -55.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698719180.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.942 kcal (2) G-P(sol) polarization free energy of solvation -58.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds