Wall clock time and date at job start Thu Apr 9 2020 14:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99923 * 2 1 4 4 H 1.48499 * 109.47135 * 269.99694 * 3 2 1 5 5 H 1.48500 * 109.46751 * 29.99670 * 3 2 1 6 6 H 1.48503 * 109.47215 * 149.99504 * 3 2 1 7 7 C 1.37879 * 120.00502 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00139 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99824 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47138 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99665 * 180.28062 * 10 9 7 12 12 O 1.21543 * 120.00296 * 359.72071 * 11 10 9 13 13 C 1.47833 * 119.99692 * 179.72375 * 11 10 9 14 14 C 1.39953 * 120.96630 * 359.97438 * 13 11 10 15 15 C 1.37967 * 119.07448 * 179.97438 * 14 13 11 16 16 N 1.31901 * 121.07201 * 0.02596 * 15 14 13 17 17 C 1.31631 * 122.14906 * 359.97229 * 16 15 14 18 18 C 1.38944 * 120.79307 * 359.72308 * 17 16 15 19 19 O 1.35658 * 120.58071 * 180.28835 * 18 17 16 20 20 H 0.96997 * 120.00009 * 0.02562 * 1 2 3 21 21 H 1.09009 * 109.46601 * 59.99932 * 9 7 2 22 22 H 1.08998 * 109.47035 * 300.00439 * 9 7 2 23 23 H 0.97001 * 119.99790 * 359.97438 * 10 9 7 24 24 H 1.08002 * 120.46458 * 359.97438 * 14 13 11 25 25 H 1.07997 * 119.46446 * 180.02562 * 15 14 13 26 26 H 1.08001 * 119.60356 * 179.97438 * 17 16 15 27 27 H 0.96702 * 114.00502 * 270.28228 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 1.7540 -4.8833 -0.0037 12 8 0.5590 -5.1055 -0.0046 13 6 2.7147 -6.0069 -0.0087 14 6 4.0948 -5.7743 -0.0082 15 6 4.9563 -6.8519 -0.0124 16 7 4.4989 -8.0891 -0.0172 17 6 3.2107 -8.3597 -0.0178 18 6 2.2693 -7.3379 -0.0075 19 8 0.9427 -7.6217 -0.0023 20 1 -0.4850 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8898 22 1 0.6241 -2.5567 0.8902 23 1 3.1569 -3.4353 0.0021 24 1 4.4800 -4.7653 -0.0047 25 1 6.0224 -6.6797 -0.0117 26 1 2.8816 -9.3883 -0.0223 27 1 0.5544 -7.7035 -0.8841 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162937160.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:06 Heat of formation + Delta-G solvation = -46.253127 kcal Electronic energy + Delta-G solvation = -14305.491018 eV Core-core repulsion = 11642.591556 eV Total energy + Delta-G solvation = -2662.899463 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.63140 -38.43173 -37.15266 -34.30809 -32.85143 -31.93767 -30.20919 -27.45799 -24.69327 -23.40230 -22.36538 -20.14887 -18.58344 -17.90435 -16.84398 -16.19956 -15.49524 -15.05865 -15.00427 -14.46895 -14.13882 -14.05530 -13.39603 -12.92966 -12.51313 -12.00595 -11.92487 -11.28182 -11.03686 -10.94409 -10.39113 -9.88746 -9.77872 -9.47657 -9.08972 -8.98152 -8.80812 -8.00211 -6.22615 -4.30334 0.73102 0.91363 3.20558 3.24138 3.26795 3.29077 3.78395 3.84836 4.06605 4.29373 4.40929 4.68526 4.88393 5.11699 5.13738 5.29701 5.54921 5.79190 5.96829 6.38917 7.19952 7.26991 7.42165 7.56285 7.59900 7.79241 7.88709 8.46762 8.67502 8.92461 9.36235 10.87524 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.048525 B = 0.006190 C = 0.005509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.888514 B = 4522.210151 C = 5081.427337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.249 3.751 10 N -0.702 5.702 11 C 0.536 3.464 12 O -0.530 6.530 13 C -0.109 4.109 14 C -0.126 4.126 15 C 0.079 3.921 16 N -0.460 5.460 17 C 0.069 3.931 18 C 0.111 3.889 19 O -0.471 6.471 20 H 0.267 0.733 21 H 0.030 0.970 22 H 0.030 0.970 23 H 0.390 0.610 24 H 0.145 0.855 25 H 0.163 0.837 26 H 0.164 0.836 27 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.529 -11.841 -1.716 14.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.584 4.584 8 H 0.082 0.918 9 C 0.129 3.871 10 N -0.351 5.351 11 C 0.320 3.680 12 O -0.408 6.408 13 C -0.121 4.121 14 C -0.147 4.147 15 C -0.077 4.077 16 N -0.171 5.171 17 C -0.090 4.090 18 C 0.062 3.938 19 O -0.280 6.280 20 H 0.077 0.923 21 H 0.048 0.952 22 H 0.048 0.952 23 H 0.224 0.776 24 H 0.162 0.838 25 H 0.180 0.820 26 H 0.181 0.819 27 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 8.093 -12.473 -1.109 14.910 hybrid contribution 0.204 1.785 -0.466 1.857 sum 8.297 -10.688 -1.575 13.622 Atomic orbital electron populations 1.69968 1.06130 1.27445 1.48586 1.24952 0.94932 0.99503 0.94561 0.86392 0.79621 0.82515 0.78257 1.20411 1.20942 1.19701 1.21194 0.93271 0.90331 1.53654 0.91835 1.19188 0.88214 0.81671 0.98026 1.46443 1.11348 1.05819 1.71459 1.17979 0.87833 0.83008 0.79132 1.90774 1.15577 1.84568 1.49866 1.21337 0.94686 0.94948 1.01128 1.22442 0.92266 1.01671 0.98323 1.22669 1.00617 0.87188 0.97212 1.67500 1.15843 1.23404 1.10320 1.23189 0.87845 0.99655 0.98315 1.19662 0.85622 0.91006 0.97511 1.84757 1.17662 1.92042 1.33546 0.92340 0.95219 0.95185 0.77620 0.83773 0.81992 0.81855 0.74545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.70 13.29 55.43 0.74 -24.96 15 2 C 0.06 1.76 5.46 -17.82 -0.10 1.67 15 3 Si 0.91 20.49 29.54 -169.99 -5.02 15.47 15 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 6 H -0.27 -5.98 7.11 56.52 0.40 -5.57 15 7 C -0.55 -14.54 9.28 -34.44 -0.32 -14.86 15 8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 15 9 C 0.25 6.51 5.43 -5.19 -0.03 6.48 15 10 N -0.70 -14.65 5.51 -62.43 -0.34 -14.99 15 11 C 0.54 10.94 7.79 -12.33 -0.10 10.84 15 12 O -0.53 -12.69 15.31 -15.86 -0.24 -12.93 15 13 C -0.11 -1.74 5.92 -104.54 -0.62 -2.36 15 14 C -0.13 -1.59 9.61 -39.04 -0.38 -1.97 15 15 C 0.08 0.89 11.16 -17.62 -0.20 0.69 15 16 N -0.46 -5.78 10.32 -13.17 -0.14 -5.92 15 17 C 0.07 0.84 11.14 -17.38 -0.19 0.65 15 18 C 0.11 1.61 6.76 -38.53 -0.26 1.35 15 19 O -0.47 -6.93 11.75 -39.86 -0.47 -7.40 15 20 H 0.27 7.27 8.31 -40.82 -0.34 6.93 15 21 H 0.03 0.85 8.14 -51.92 -0.42 0.43 15 22 H 0.03 0.87 8.14 -51.93 -0.42 0.45 15 23 H 0.39 6.86 6.46 -40.82 -0.26 6.60 15 24 H 0.14 1.52 6.53 -52.49 -0.34 1.18 15 25 H 0.16 1.27 8.06 -52.49 -0.42 0.85 15 26 H 0.16 1.54 8.06 -52.49 -0.42 1.11 15 27 H 0.40 4.20 9.06 45.56 0.41 4.61 15 LS Contribution 249.93 15.07 3.77 3.77 Total: -1.00 -33.23 249.93 -5.31 -38.54 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -1.42 Total: 5.93 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -2.19 Total: 2.49 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 0.26 Total: -45.87 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.71 Total: -20.33 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -33.23 -5.31 -38.54 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162937160.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.709 kcal (2) G-P(sol) polarization free energy of solvation -33.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds