Wall clock time and date at job start Thu Apr 9 2020 14:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99923 * 2 1 4 4 H 1.48499 * 109.47135 * 269.99694 * 3 2 1 5 5 H 1.48500 * 109.46751 * 29.99670 * 3 2 1 6 6 H 1.48503 * 109.47215 * 149.99504 * 3 2 1 7 7 C 1.37879 * 120.00502 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00139 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99824 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47138 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99665 * 180.28062 * 10 9 7 12 12 O 1.21543 * 120.00296 * 359.72071 * 11 10 9 13 13 C 1.47833 * 119.99692 * 179.72375 * 11 10 9 14 14 C 1.39953 * 120.96630 * 359.97438 * 13 11 10 15 15 C 1.37967 * 119.07448 * 179.97438 * 14 13 11 16 16 N 1.31901 * 121.07201 * 0.02596 * 15 14 13 17 17 C 1.31631 * 122.14906 * 359.97229 * 16 15 14 18 18 C 1.38944 * 120.79307 * 359.72308 * 17 16 15 19 19 O 1.35658 * 120.58071 * 180.28835 * 18 17 16 20 20 H 0.96997 * 120.00009 * 0.02562 * 1 2 3 21 21 H 1.09009 * 109.46601 * 59.99932 * 9 7 2 22 22 H 1.08998 * 109.47035 * 300.00439 * 9 7 2 23 23 H 0.97001 * 119.99790 * 359.97438 * 10 9 7 24 24 H 1.08002 * 120.46458 * 359.97438 * 14 13 11 25 25 H 1.07997 * 119.46446 * 180.02562 * 15 14 13 26 26 H 1.08001 * 119.60356 * 179.97438 * 17 16 15 27 27 H 0.96702 * 114.00502 * 270.28228 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 1.7540 -4.8833 -0.0037 12 8 0.5590 -5.1055 -0.0046 13 6 2.7147 -6.0069 -0.0087 14 6 4.0948 -5.7743 -0.0082 15 6 4.9563 -6.8519 -0.0124 16 7 4.4989 -8.0891 -0.0172 17 6 3.2107 -8.3597 -0.0178 18 6 2.2693 -7.3379 -0.0075 19 8 0.9427 -7.6217 -0.0023 20 1 -0.4850 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8898 22 1 0.6241 -2.5567 0.8902 23 1 3.1569 -3.4353 0.0021 24 1 4.4800 -4.7653 -0.0047 25 1 6.0224 -6.6797 -0.0117 26 1 2.8816 -9.3883 -0.0223 27 1 0.5544 -7.7035 -0.8841 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162937160.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:06 Heat of formation + Delta-G solvation = -72.571976 kcal Electronic energy + Delta-G solvation = -14306.632289 eV Core-core repulsion = 11642.591556 eV Total energy + Delta-G solvation = -2664.040734 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.079 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.79128 -39.98205 -38.24702 -36.21076 -34.59109 -33.36764 -31.22108 -29.41325 -26.11882 -24.69020 -23.91377 -21.76432 -19.90615 -19.20740 -18.09203 -17.94342 -16.80627 -16.66838 -16.47414 -16.01298 -15.73028 -15.15956 -14.57451 -14.43550 -14.06083 -13.94567 -13.47377 -12.94871 -12.72762 -12.32568 -12.24805 -11.51923 -11.31146 -10.94814 -10.82798 -10.39531 -9.99558 -9.88728 -8.31094 -6.48276 -0.42970 -0.04105 1.43505 1.45839 1.57033 1.86752 2.19801 2.43339 2.69470 3.03224 3.04527 3.52230 3.60804 3.77071 3.94107 4.31607 4.66687 4.73381 4.91315 5.08895 5.18367 5.39130 5.47472 5.60880 5.79849 6.60160 6.63293 6.75730 6.83058 7.17859 7.32815 8.81115 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.048525 B = 0.006190 C = 0.005509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.888514 B = 4522.210151 C = 5081.427337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.986 3.014 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.254 1.254 7 C -0.558 4.558 8 H 0.087 0.913 9 C 0.266 3.734 10 N -0.696 5.696 11 C 0.535 3.465 12 O -0.576 6.576 13 C -0.136 4.136 14 C -0.118 4.118 15 C 0.090 3.910 16 N -0.464 5.464 17 C 0.079 3.921 18 C 0.100 3.900 19 O -0.489 6.489 20 H 0.269 0.731 21 H -0.007 1.007 22 H -0.011 1.011 23 H 0.408 0.592 24 H 0.165 0.835 25 H 0.204 0.796 26 H 0.192 0.808 27 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.680 -12.059 -1.790 16.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.809 3.191 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.178 1.178 7 C -0.595 4.595 8 H 0.105 0.895 9 C 0.144 3.856 10 N -0.347 5.347 11 C 0.322 3.678 12 O -0.456 6.456 13 C -0.148 4.148 14 C -0.138 4.138 15 C -0.066 4.066 16 N -0.175 5.175 17 C -0.080 4.080 18 C 0.051 3.949 19 O -0.301 6.301 20 H 0.078 0.922 21 H 0.011 0.989 22 H 0.007 0.993 23 H 0.245 0.755 24 H 0.182 0.818 25 H 0.220 0.780 26 H 0.209 0.791 27 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 11.293 -12.726 -1.193 17.056 hybrid contribution -0.770 1.741 -0.451 1.956 sum 10.522 -10.986 -1.644 15.301 Atomic orbital electron populations 1.70133 1.08314 1.28665 1.49762 1.26073 0.95776 1.03942 0.93743 0.85137 0.78514 0.76818 0.78639 1.19523 1.21090 1.17762 1.21599 0.94414 0.90327 1.53197 0.89532 1.18630 0.88597 0.83966 0.94447 1.46116 1.11476 1.05110 1.71976 1.18670 0.88153 0.83667 0.77275 1.90737 1.17958 1.85294 1.51642 1.21059 0.95229 0.93613 1.04864 1.22674 0.90676 1.03371 0.97102 1.23294 1.02217 0.86077 0.94991 1.67627 1.15700 1.24109 1.10059 1.23524 0.87267 1.00226 0.96972 1.19903 0.85879 0.91076 0.98008 1.84708 1.18332 1.92044 1.35019 0.92186 0.98920 0.99256 0.75475 0.81792 0.77954 0.79107 0.73016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.57 13.29 21.45 0.28 -55.29 15 2 C 0.00 0.25 5.46 84.66 0.46 0.71 15 3 Si 0.99 41.49 29.54 68.60 2.03 43.52 15 4 H -0.27 -10.95 7.11 99.48 0.71 -10.24 15 5 H -0.29 -11.98 7.11 99.48 0.71 -11.27 15 6 H -0.25 -9.87 7.11 99.48 0.71 -9.17 15 7 C -0.56 -29.79 9.28 25.60 0.24 -29.55 15 8 H 0.09 4.12 7.60 -2.91 -0.02 4.10 15 9 C 0.27 14.51 5.43 85.63 0.46 14.97 15 10 N -0.70 -29.55 5.51 -469.72 -2.59 -32.14 15 11 C 0.54 22.40 7.79 86.78 0.68 23.07 15 12 O -0.58 -28.99 15.31 16.41 0.25 -28.74 15 13 C -0.14 -4.24 5.92 -19.81 -0.12 -4.35 15 14 C -0.12 -2.64 9.61 22.62 0.22 -2.43 15 15 C 0.09 1.65 11.16 84.62 0.94 2.60 15 16 N -0.46 -10.03 10.32 -195.58 -2.02 -12.05 15 17 C 0.08 1.73 11.14 84.89 0.95 2.67 15 18 C 0.10 2.82 6.76 22.95 0.16 2.97 15 19 O -0.49 -14.54 11.75 -69.48 -0.82 -15.35 15 20 H 0.27 15.01 8.31 -92.71 -0.77 14.24 15 21 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 15 22 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 15 23 H 0.41 13.96 6.46 -92.71 -0.60 13.36 15 24 H 0.16 2.92 6.53 -2.91 -0.02 2.90 15 25 H 0.20 2.06 8.06 -2.91 -0.02 2.04 15 26 H 0.19 3.02 8.06 -2.91 -0.02 3.00 15 27 H 0.41 8.95 9.06 -74.06 -0.67 8.28 15 Total: -1.00 -74.37 249.93 1.08 -73.29 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -0.05 Total: 16.11 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: 3.99 Total: 10.66 kcal Atomic # 7 Polarization: -95.16 SS G_CDS: -4.32 Total: -99.48 kcal Atomic # 8 Polarization: -43.53 SS G_CDS: -0.57 Total: -44.10 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -74.37 1.08 -73.29 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162937160.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.721 kcal (2) G-P(sol) polarization free energy of solvation -74.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds