Wall clock time and date at job start Thu Apr 9 2020 14:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00348 * 2 1 4 4 H 1.48495 * 109.47231 * 270.00219 * 3 2 1 5 5 H 1.48504 * 109.46706 * 30.00397 * 3 2 1 6 6 H 1.48501 * 109.46979 * 150.00235 * 3 2 1 7 7 C 1.37883 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99985 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99750 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47177 * 179.97438 * 9 7 2 11 11 C 1.39898 * 120.00412 * 179.97438 * 10 9 7 12 12 C 1.37713 * 120.01885 * 0.02562 * 11 10 9 13 13 C 1.41231 * 119.59695 * 179.97438 * 12 11 10 14 14 N 1.33273 * 120.17073 * 180.02562 * 13 12 11 15 15 O 1.21802 * 119.99430 * 179.97438 * 14 13 12 16 16 C 1.41280 * 119.65330 * 0.02562 * 13 12 11 17 17 C 1.36228 * 120.03467 * 359.71763 * 16 13 12 18 18 C 1.39346 * 120.40365 * 0.55975 * 17 16 13 19 19 O 1.35485 * 119.82445 * 179.71723 * 18 17 16 20 20 H 0.97001 * 119.99363 * 359.97438 * 1 2 3 21 21 H 1.09003 * 109.47573 * 59.99762 * 9 7 2 22 22 H 1.09002 * 109.47203 * 299.99994 * 9 7 2 23 23 H 0.97000 * 120.00078 * 359.97438 * 10 9 7 24 24 H 1.07999 * 120.20243 * 359.95294 * 12 11 10 25 25 H 1.07991 * 119.98391 * 180.02562 * 16 13 12 26 26 H 1.07994 * 119.80193 * 180.29781 * 17 16 13 27 27 H 0.96696 * 114.00004 * 269.72707 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2029 -3.6127 -0.0027 11 6 1.7366 -4.9317 -0.0033 12 6 0.3827 -5.1838 -0.0036 13 6 -0.0782 -6.5187 -0.0048 14 7 -1.3859 -6.7758 -0.0055 15 8 -1.7799 -7.9283 -0.0070 16 6 0.8542 -7.5801 -0.0052 17 6 2.1902 -7.3141 -0.0102 18 6 2.6471 -5.9977 -0.0033 19 8 3.9785 -5.7465 -0.0026 20 1 -0.4849 0.8401 0.0004 21 1 0.6246 -2.5563 -0.8919 22 1 0.6239 -2.5574 0.8880 23 1 3.1566 -3.4355 -0.0029 24 1 -0.3223 -4.3656 -0.0025 25 1 0.5076 -8.6029 -0.0065 26 1 2.8996 -8.1283 -0.0154 27 1 4.3647 -5.6743 0.8810 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000197363712.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:08 Heat of formation + Delta-G solvation = -6.872411 kcal Electronic energy + Delta-G solvation = -14218.292230 eV Core-core repulsion = 11557.100443 eV Total energy + Delta-G solvation = -2661.191787 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.079 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.41021 -39.16475 -36.52768 -35.26662 -32.81961 -31.18426 -29.56509 -26.79659 -25.77898 -23.38370 -21.52203 -21.05094 -18.61449 -17.90152 -16.96771 -16.15817 -15.59267 -15.05368 -14.97452 -14.82311 -14.08809 -13.80772 -13.37142 -13.24069 -12.67652 -12.13376 -11.97393 -11.78492 -11.12500 -11.06178 -10.63211 -10.25272 -9.91341 -9.58670 -9.10538 -8.79384 -8.71332 -6.96480 -6.34914 -4.42064 -0.07058 1.62459 2.37370 3.14207 3.20655 3.22945 3.80600 3.95338 4.18643 4.24353 4.65071 4.86132 5.02435 5.17331 5.46702 5.52594 5.93398 6.02768 6.28983 6.31560 6.61306 6.87249 7.16402 7.38782 7.59154 7.74721 7.93948 8.36283 8.38601 8.68174 9.25191 10.75608 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.034997 B = 0.006725 C = 0.005661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.879419 B = 4162.541843 C = 4944.731788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.065 3.935 3 Si 0.907 3.093 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.544 4.544 8 H 0.064 0.936 9 C 0.247 3.753 10 N -0.716 5.716 11 C 0.185 3.815 12 C -0.083 4.083 13 C -0.078 4.078 14 N -0.346 5.346 15 O 0.147 5.853 16 C -0.115 4.115 17 C -0.122 4.122 18 C 0.076 3.924 19 O -0.488 6.488 20 H 0.268 0.732 21 H 0.022 0.978 22 H 0.022 0.978 23 H 0.400 0.600 24 H 0.144 0.856 25 H 0.144 0.856 26 H 0.134 0.866 27 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.963 -12.386 1.641 13.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.139 4.139 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.582 4.582 8 H 0.082 0.918 9 C 0.126 3.874 10 N -0.340 5.340 11 C 0.073 3.927 12 C -0.109 4.109 13 C -0.184 4.184 14 N 0.169 4.831 15 O -0.256 6.256 16 C -0.138 4.138 17 C -0.142 4.142 18 C 0.025 3.975 19 O -0.298 6.298 20 H 0.078 0.922 21 H 0.040 0.960 22 H 0.040 0.960 23 H 0.235 0.765 24 H 0.162 0.838 25 H 0.161 0.839 26 H 0.152 0.848 27 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 3.697 -9.922 1.039 10.640 hybrid contribution 1.502 0.486 0.485 1.651 sum 5.199 -9.437 1.524 10.881 Atomic orbital electron populations 1.69939 1.06160 1.27685 1.48629 1.24951 0.94975 0.99629 0.94356 0.86350 0.79604 0.82238 0.78399 1.20293 1.20823 1.19679 1.21113 0.93395 0.90066 1.53601 0.91774 1.19238 0.88660 0.82731 0.96758 1.45531 1.10360 1.01432 1.76636 1.18243 0.92126 0.86763 0.95552 1.20947 0.94161 0.95492 1.00261 1.20826 0.93198 0.94410 1.09970 1.74039 1.11968 1.14717 0.82352 1.93593 1.81100 1.20461 1.30439 1.21575 0.92925 0.99733 0.99609 1.20826 0.96088 0.95362 1.01915 1.18636 0.82837 0.91055 1.05020 1.84722 1.18322 1.93536 1.33236 0.92211 0.95987 0.95980 0.76547 0.83848 0.83857 0.84823 0.75729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.31 13.29 55.43 0.74 -24.58 15 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 15 3 Si 0.91 20.60 29.54 -169.99 -5.02 15.58 15 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 15 7 C -0.54 -14.48 9.28 -34.44 -0.32 -14.80 15 8 H 0.06 1.64 7.60 -52.49 -0.40 1.24 15 9 C 0.25 6.17 4.66 -5.20 -0.02 6.15 15 10 N -0.72 -14.78 5.72 -59.71 -0.34 -15.12 15 11 C 0.18 3.47 6.67 -83.63 -0.56 2.91 15 12 C -0.08 -1.62 9.30 -38.64 -0.36 -1.98 15 13 C -0.08 -1.39 6.68 -84.95 -0.57 -1.96 15 14 N -0.35 -6.09 11.61 32.18 0.37 -5.72 15 15 O 0.15 2.12 18.28 -4.24 -0.08 2.04 15 16 C -0.11 -1.66 9.45 -39.15 -0.37 -2.03 15 17 C -0.12 -1.67 9.90 -39.89 -0.40 -2.06 15 18 C 0.08 1.19 6.75 -38.43 -0.26 0.94 15 19 O -0.49 -6.62 12.71 -18.15 -0.23 -6.85 15 20 H 0.27 7.20 8.31 -40.82 -0.34 6.86 15 21 H 0.02 0.60 7.95 -51.93 -0.41 0.19 15 22 H 0.02 0.59 7.95 -51.93 -0.41 0.18 15 23 H 0.40 7.70 7.68 -40.82 -0.31 7.39 15 24 H 0.14 3.06 6.72 -52.49 -0.35 2.71 15 25 H 0.14 1.67 7.46 -52.49 -0.39 1.28 15 26 H 0.13 1.41 8.06 -52.49 -0.42 0.99 15 27 H 0.39 3.43 9.06 45.56 0.41 3.84 15 LS Contribution 251.39 15.07 3.79 3.79 Total: -1.00 -29.64 251.39 -5.15 -34.79 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -1.43 Total: 7.25 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -2.95 Total: -11.17 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: 0.77 Total: -45.42 kcal Atomic # 8 Polarization: -4.50 SS G_CDS: -0.31 Total: -4.81 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -29.64 -5.15 -34.79 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000197363712.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.914 kcal (2) G-P(sol) polarization free energy of solvation -29.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds