Wall clock time and date at job start Thu Apr 9 2020 14:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31471 * 1 3 3 Si 1.86807 * 119.99837 * 2 1 4 4 H 1.48496 * 109.46854 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46902 * 299.99851 * 3 2 1 6 6 H 1.48504 * 109.46938 * 60.00076 * 3 2 1 7 7 C 1.38885 * 120.00026 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99740 * 180.02562 * 7 2 1 9 9 N 1.37159 * 119.99977 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00335 * 179.97438 * 9 7 2 11 11 O 1.21595 * 119.99572 * 0.02562 * 10 9 7 12 12 N 1.34775 * 120.00554 * 180.02562 * 10 9 7 13 13 C 1.39897 * 120.00309 * 185.31770 * 12 10 9 14 14 C 1.38941 * 120.04553 * 213.28814 * 13 12 10 15 15 C 1.38119 * 120.03882 * 180.02562 * 14 13 12 16 16 C 1.38219 * 120.12410 * 359.74650 * 15 14 13 17 17 C 1.38762 * 120.08819 * 0.50628 * 16 15 14 18 18 O 1.35899 * 120.02088 * 179.76972 * 17 16 15 19 19 C 1.38621 * 119.95887 * 359.49575 * 17 16 15 20 20 H 0.97004 * 119.99706 * 0.02562 * 1 2 3 21 21 H 0.97007 * 120.00091 * 0.02562 * 9 7 2 22 22 H 0.96999 * 119.99750 * 5.31687 * 12 10 9 23 23 H 1.08001 * 119.97885 * 359.97438 * 14 13 12 24 24 H 1.07999 * 119.93444 * 180.02562 * 15 14 13 25 25 H 1.08001 * 119.95369 * 180.25292 * 16 15 14 26 26 H 0.96698 * 113.99760 * 269.72733 * 18 17 16 27 27 H 1.07999 * 120.06191 * 180.23309 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3147 0.0000 0.0000 3 14 2.2487 1.6178 0.0000 4 1 3.7087 1.3464 0.0006 5 1 1.8899 2.3964 -1.2125 6 1 1.8899 2.3965 1.2126 7 6 2.0091 -1.2028 0.0005 8 1 3.0892 -1.2027 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9971 -3.5578 0.0005 11 8 3.2131 -3.5578 0.0010 12 7 1.3233 -4.7250 0.0000 13 6 2.0182 -5.9340 0.1123 14 6 1.5482 -7.0694 -0.5362 15 6 2.2341 -8.2630 -0.4248 16 6 3.3919 -8.3302 0.3272 17 6 3.8631 -7.2008 0.9813 18 8 4.9991 -7.2696 1.7240 19 6 3.1776 -6.0010 0.8719 20 1 -0.4850 0.8401 -0.0004 21 1 0.3533 -2.3906 -0.0002 22 1 0.3565 -4.7268 -0.0782 23 1 0.6456 -7.0187 -1.1270 24 1 1.8675 -9.1444 -0.9299 25 1 3.9283 -9.2641 0.4090 26 1 4.8492 -7.4981 2.6516 27 1 3.5449 -5.1200 1.3773 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217263923.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:21 Heat of formation + Delta-G solvation = -43.523500 kcal Electronic energy + Delta-G solvation = -14338.934311 eV Core-core repulsion = 11676.153214 eV Total energy + Delta-G solvation = -2662.781097 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.95349 -38.52255 -36.52294 -34.29924 -33.54199 -31.33520 -29.71678 -28.75377 -24.96039 -22.62465 -22.03823 -20.00344 -18.47376 -18.04145 -17.08259 -16.18497 -15.64144 -15.24661 -14.60695 -14.37026 -14.06711 -13.62083 -13.27195 -13.00056 -12.26109 -11.99335 -11.54660 -11.37108 -11.15092 -10.46638 -10.35287 -10.25697 -9.99425 -9.51987 -8.96876 -8.40775 -8.07253 -7.62159 -6.42591 -3.84564 1.50303 1.66863 3.17974 3.26139 3.32289 3.59471 3.81770 4.22049 4.27825 4.51826 5.13118 5.30274 5.39613 5.44138 5.61739 5.82212 5.89262 6.19411 6.56293 6.67610 6.72436 6.85401 7.41735 7.46666 7.56725 7.88483 8.25402 8.62347 9.13434 9.51270 9.99595 10.76250 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.053573 B = 0.006174 C = 0.005650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.525373 B = 4533.739201 C = 4954.222398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.020 3.980 3 Si 0.933 3.067 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.289 4.289 8 H 0.105 0.895 9 N -0.574 5.574 10 C 0.643 3.357 11 O -0.607 6.607 12 N -0.696 5.696 13 C 0.211 3.789 14 C -0.174 4.174 15 C -0.085 4.085 16 C -0.183 4.183 17 C 0.121 3.879 18 O -0.499 6.499 19 C -0.151 4.151 20 H 0.270 0.730 21 H 0.392 0.608 22 H 0.400 0.600 23 H 0.123 0.877 24 H 0.124 0.876 25 H 0.121 0.879 26 H 0.386 0.614 27 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.238 -13.059 1.983 13.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.181 4.181 3 Si 0.760 3.240 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.418 4.418 8 H 0.123 0.877 9 N -0.214 5.214 10 C 0.344 3.656 11 O -0.489 6.489 12 N -0.343 5.343 13 C 0.113 3.887 14 C -0.196 4.196 15 C -0.104 4.104 16 C -0.202 4.202 17 C 0.076 3.924 18 O -0.308 6.308 19 C -0.172 4.172 20 H 0.080 0.920 21 H 0.226 0.774 22 H 0.234 0.766 23 H 0.141 0.859 24 H 0.142 0.858 25 H 0.139 0.861 26 H 0.241 0.759 27 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.963 -12.554 1.462 12.675 hybrid contribution -0.909 0.784 0.328 1.244 sum 0.054 -11.770 1.791 11.906 Atomic orbital electron populations 1.69643 1.05841 1.27995 1.51329 1.25221 0.95725 0.99563 0.97619 0.85745 0.79625 0.80969 0.77680 1.19214 1.20768 1.20771 1.19663 0.93166 0.81210 1.47802 0.87694 1.41044 1.08859 1.03018 1.68456 1.15906 0.85785 0.80168 0.83692 1.90786 1.11551 1.85733 1.60782 1.42793 1.09647 1.03783 1.78084 1.17356 0.92928 0.85050 0.93403 1.20869 1.03149 0.92851 1.02698 1.20658 0.94516 0.97062 0.98136 1.21199 0.98014 0.98095 1.02940 1.18280 0.86446 0.92247 0.95455 1.84833 1.28475 1.92704 1.24808 1.21551 0.95968 0.98600 1.01100 0.91975 0.77394 0.76557 0.85856 0.85805 0.86073 0.75918 0.83705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.57 13.05 55.49 0.72 -23.85 15 2 C 0.02 0.53 5.50 -17.47 -0.10 0.43 15 3 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 15 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 15 5 H -0.28 -6.28 7.11 56.52 0.40 -5.87 15 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 7 C -0.29 -8.04 9.68 -14.93 -0.14 -8.19 15 8 H 0.11 3.07 7.16 -52.49 -0.38 2.69 15 9 N -0.57 -14.54 5.29 -15.34 -0.08 -14.62 15 10 C 0.64 15.53 8.25 -86.92 -0.72 14.81 15 11 O -0.61 -16.81 13.60 5.28 0.07 -16.74 15 12 N -0.70 -13.11 5.35 -14.24 -0.08 -13.18 15 13 C 0.21 3.76 6.28 -83.72 -0.53 3.23 15 14 C -0.17 -2.49 9.96 -39.36 -0.39 -2.89 15 15 C -0.08 -1.08 10.03 -39.63 -0.40 -1.48 15 16 C -0.18 -2.49 9.98 -39.39 -0.39 -2.88 15 17 C 0.12 1.94 6.70 -39.25 -0.26 1.67 15 18 O -0.50 -7.25 13.50 -19.42 -0.26 -7.52 15 19 C -0.15 -2.84 8.59 -39.24 -0.34 -3.18 15 20 H 0.27 6.93 8.31 -40.82 -0.34 6.59 15 21 H 0.39 9.39 7.92 -40.82 -0.32 9.06 15 22 H 0.40 6.15 8.83 -40.82 -0.36 5.78 15 23 H 0.12 1.47 8.06 -52.49 -0.42 1.05 15 24 H 0.12 1.18 8.06 -52.49 -0.42 0.75 15 25 H 0.12 1.37 8.06 -52.49 -0.42 0.94 15 26 H 0.39 3.46 9.06 45.56 0.41 3.87 15 27 H 0.15 3.15 6.41 -52.49 -0.34 2.81 15 LS Contribution 248.51 15.07 3.75 3.75 Total: -1.00 -32.83 248.51 -5.55 -38.38 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -1.39 Total: 16.16 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -3.27 Total: 1.54 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: 0.57 Total: -51.65 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -0.19 Total: -24.25 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -32.83 -5.55 -38.38 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217263923.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.141 kcal (2) G-P(sol) polarization free energy of solvation -32.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds