Wall clock time and date at job start Thu Apr 9 2020 14:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99821 * 2 1 4 4 H 1.48508 * 109.46980 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47123 * 300.00082 * 3 2 1 6 6 H 1.48501 * 109.47280 * 60.00104 * 3 2 1 7 7 C 1.37877 * 120.00172 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00136 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99747 * 359.97438 * 7 2 1 10 10 C 1.50694 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.38311 * 119.92913 * 270.28616 * 10 9 7 12 12 C 1.38085 * 120.07480 * 180.27704 * 11 10 9 13 13 C 1.38931 * 119.92378 * 359.44344 * 12 11 10 14 14 N 1.39674 * 120.07436 * 180.30195 * 13 12 11 15 15 C 1.38894 * 119.85289 * 0.27110 * 13 12 11 16 16 N 1.47998 * 120.03920 * 180.02562 * 15 13 12 17 17 O 1.21799 * 119.99965 * 173.75055 * 16 15 13 18 18 O 1.21798 * 120.00444 * 353.75643 * 16 15 13 19 19 C 1.38128 * 119.92390 * 0.02562 * 15 13 12 20 20 H 0.97004 * 119.99626 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.46967 * 60.00396 * 9 7 2 22 22 H 1.08998 * 109.47716 * 300.00274 * 9 7 2 23 23 H 1.07997 * 119.96595 * 359.97438 * 11 10 9 24 24 H 1.07993 * 120.03547 * 179.71244 * 12 11 10 25 25 H 0.97001 * 119.99650 * 155.65722 * 14 13 12 26 26 H 0.96993 * 120.00256 * 335.65329 * 14 13 12 27 27 H 1.07993 * 119.96352 * 179.97438 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 6 2.2303 -3.6445 0.0015 11 6 2.6823 -4.1657 -1.1973 12 6 3.5752 -5.2191 -1.2011 13 6 4.0284 -5.7477 0.0011 14 7 4.9364 -6.8091 0.0010 15 6 3.5770 -5.2181 1.2032 16 7 4.0575 -5.7778 2.4862 17 8 3.7520 -5.2423 3.5367 18 8 4.7585 -6.7738 2.4918 19 6 2.6791 -4.1685 1.1997 20 1 -0.4850 0.8401 0.0004 21 1 0.6241 -2.5574 -0.8881 22 1 0.6247 -2.5563 0.8919 23 1 2.3328 -3.7516 -2.1315 24 1 3.9241 -5.6285 -2.1375 25 1 5.5151 -6.9522 0.7661 26 1 4.9882 -7.4029 -0.7642 27 1 2.3274 -3.7565 2.1340 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226192480.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:31 Heat of formation + Delta-G solvation = 11.234584 kcal Electronic energy + Delta-G solvation = -14473.241791 eV Core-core repulsion = 11812.835182 eV Total energy + Delta-G solvation = -2660.406609 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.079 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.84019 -39.18464 -36.40348 -34.95259 -32.95719 -31.47655 -30.27336 -26.89009 -25.71452 -23.29195 -22.42788 -21.01272 -18.34078 -18.06792 -17.32885 -16.89718 -16.60758 -16.42158 -14.73704 -14.45266 -13.98396 -13.48966 -13.16422 -12.37238 -11.98097 -11.55091 -11.34791 -11.16983 -10.94049 -10.84655 -10.67786 -10.58476 -10.27091 -9.77736 -9.41804 -9.12894 -8.53624 -7.51541 -6.15181 -4.20603 0.36404 1.61097 1.85528 1.88727 3.23648 3.32079 3.36062 3.77855 3.86744 4.36746 4.72153 5.16722 5.19750 5.43489 5.50370 5.63837 5.97143 6.11501 6.47817 6.71236 6.74848 6.99678 7.31632 7.38707 7.54550 7.71896 7.79334 8.07032 8.15588 8.84303 9.44751 10.94128 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.036703 B = 0.007190 C = 0.006626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.706149 B = 3893.162343 C = 4224.497342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.519 4.519 8 H 0.058 0.942 9 C 0.053 3.947 10 C -0.079 4.079 11 C -0.024 4.024 12 C -0.197 4.197 13 C 0.254 3.746 14 N -0.867 5.867 15 C -0.115 4.115 16 N 0.054 4.946 17 O -0.174 6.174 18 O -0.209 6.209 19 C -0.027 4.027 20 H 0.263 0.737 21 H 0.035 0.965 22 H 0.033 0.967 23 H 0.139 0.861 24 H 0.136 0.864 25 H 0.410 0.590 26 H 0.399 0.601 27 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.429 -10.371 -2.812 12.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.557 4.557 8 H 0.076 0.924 9 C 0.016 3.984 10 C -0.081 4.081 11 C -0.043 4.043 12 C -0.220 4.220 13 C 0.145 3.855 14 N -0.416 5.416 15 C -0.205 4.205 16 N 0.562 4.438 17 O -0.388 6.388 18 O -0.410 6.410 19 C -0.047 4.047 20 H 0.073 0.927 21 H 0.053 0.947 22 H 0.052 0.948 23 H 0.157 0.843 24 H 0.154 0.846 25 H 0.247 0.753 26 H 0.228 0.772 27 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 6.097 -10.037 -3.339 12.209 hybrid contribution 0.832 0.547 0.313 1.043 sum 6.929 -9.490 -3.026 12.134 Atomic orbital electron populations 1.69954 1.06051 1.26975 1.49956 1.24998 0.94886 0.99345 0.94875 0.86471 0.80110 0.83354 0.77748 1.19670 1.20880 1.20782 1.21085 0.93083 0.89794 1.51751 0.92368 1.18337 0.92145 0.88881 0.99014 1.20586 0.99579 0.97745 0.90219 1.21404 0.91845 0.91719 0.99311 1.20757 1.04828 1.01071 0.95359 1.17342 0.88980 0.88016 0.91160 1.43009 1.42158 1.31326 1.25120 1.20797 1.11103 1.07549 0.81036 1.43530 0.98108 0.99058 1.03131 1.94524 1.61458 1.62113 1.20705 1.94234 1.36799 1.16365 1.93614 1.20852 0.91889 0.90846 1.01075 0.92704 0.94718 0.94834 0.84328 0.84649 0.75275 0.77246 0.83415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.20 13.29 55.43 0.74 -24.46 15 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 15 3 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 15 4 H -0.27 -6.26 7.11 56.52 0.40 -5.85 15 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 6 H -0.28 -6.54 7.11 56.52 0.40 -6.13 15 7 C -0.52 -13.69 9.09 -34.44 -0.31 -14.00 15 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 15 9 C 0.05 1.25 5.10 -29.04 -0.15 1.10 15 10 C -0.08 -1.53 5.07 -104.59 -0.53 -2.07 15 11 C -0.02 -0.38 9.69 -39.61 -0.38 -0.77 15 12 C -0.20 -2.73 9.94 -39.38 -0.39 -3.12 15 13 C 0.25 3.81 6.74 -83.79 -0.56 3.25 15 14 N -0.87 -10.33 8.50 32.41 0.28 -10.06 15 15 C -0.11 -2.04 6.86 -79.76 -0.55 -2.58 15 16 N 0.05 0.99 4.45 34.06 0.15 1.14 15 17 O -0.17 -3.39 18.46 -29.46 -0.54 -3.93 15 18 O -0.21 -3.61 15.87 -29.46 -0.47 -4.07 15 19 C -0.03 -0.51 9.20 -39.61 -0.36 -0.88 15 20 H 0.26 7.04 8.31 -40.82 -0.34 6.70 15 21 H 0.03 0.84 8.09 -51.93 -0.42 0.42 15 22 H 0.03 0.84 8.08 -51.93 -0.42 0.42 15 23 H 0.14 2.04 8.06 -52.49 -0.42 1.61 15 24 H 0.14 1.41 8.06 -52.49 -0.42 0.99 15 25 H 0.41 5.08 6.07 -40.82 -0.25 4.84 15 26 H 0.40 3.44 8.91 -40.82 -0.36 3.08 15 27 H 0.15 2.85 7.62 -52.49 -0.40 2.45 15 LS Contribution 249.53 15.07 3.76 3.76 Total: -1.00 -29.10 249.53 -6.69 -35.79 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -2.24 Total: 3.56 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: -3.34 Total: -17.51 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: 1.16 Total: -33.38 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: -1.01 Total: -8.01 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -29.10 -6.69 -35.79 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226192480.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.025 kcal (2) G-P(sol) polarization free energy of solvation -29.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds