Wall clock time and date at job start Thu Apr 9 2020 14:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99821 * 2 1 4 4 H 1.48508 * 109.46980 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47123 * 300.00082 * 3 2 1 6 6 H 1.48501 * 109.47280 * 60.00104 * 3 2 1 7 7 C 1.37877 * 120.00172 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00136 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99747 * 359.97438 * 7 2 1 10 10 C 1.50694 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.38311 * 119.92913 * 270.28616 * 10 9 7 12 12 C 1.38085 * 120.07480 * 180.27704 * 11 10 9 13 13 C 1.38931 * 119.92378 * 359.44344 * 12 11 10 14 14 N 1.39674 * 120.07436 * 180.30195 * 13 12 11 15 15 C 1.38894 * 119.85289 * 0.27110 * 13 12 11 16 16 N 1.47998 * 120.03920 * 180.02562 * 15 13 12 17 17 O 1.21799 * 119.99965 * 173.75055 * 16 15 13 18 18 O 1.21798 * 120.00444 * 353.75643 * 16 15 13 19 19 C 1.38128 * 119.92390 * 0.02562 * 15 13 12 20 20 H 0.97004 * 119.99626 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.46967 * 60.00396 * 9 7 2 22 22 H 1.08998 * 109.47716 * 300.00274 * 9 7 2 23 23 H 1.07997 * 119.96595 * 359.97438 * 11 10 9 24 24 H 1.07993 * 120.03547 * 179.71244 * 12 11 10 25 25 H 0.97001 * 119.99650 * 155.65722 * 14 13 12 26 26 H 0.96993 * 120.00256 * 335.65329 * 14 13 12 27 27 H 1.07993 * 119.96352 * 179.97438 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 6 2.2303 -3.6445 0.0015 11 6 2.6823 -4.1657 -1.1973 12 6 3.5752 -5.2191 -1.2011 13 6 4.0284 -5.7477 0.0011 14 7 4.9364 -6.8091 0.0010 15 6 3.5770 -5.2181 1.2032 16 7 4.0575 -5.7778 2.4862 17 8 3.7520 -5.2423 3.5367 18 8 4.7585 -6.7738 2.4918 19 6 2.6791 -4.1685 1.1997 20 1 -0.4850 0.8401 0.0004 21 1 0.6241 -2.5574 -0.8881 22 1 0.6247 -2.5563 0.8919 23 1 2.3328 -3.7516 -2.1315 24 1 3.9241 -5.6285 -2.1375 25 1 5.5151 -6.9522 0.7661 26 1 4.9882 -7.4029 -0.7642 27 1 2.3274 -3.7565 2.1340 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226192480.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:31 Heat of formation + Delta-G solvation = -6.544190 kcal Electronic energy + Delta-G solvation = -14474.012736 eV Core-core repulsion = 11812.835182 eV Total energy + Delta-G solvation = -2661.177554 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.25070 -40.51599 -37.80545 -36.39234 -34.79687 -32.81666 -31.82929 -28.56491 -27.14382 -25.05753 -23.75386 -22.49810 -19.73851 -19.50716 -18.72055 -18.48187 -18.11551 -17.79948 -16.61170 -15.75968 -15.27113 -14.89984 -14.68358 -14.10906 -13.52616 -13.33400 -13.00273 -12.66301 -12.58243 -12.44440 -12.30157 -12.12627 -11.77962 -11.60978 -11.13002 -10.61220 -10.43294 -8.81374 -8.19174 -6.33479 -1.01999 0.31150 0.47362 0.51788 1.39733 1.42239 1.53537 2.37076 2.56994 2.66976 3.11332 3.47078 3.84283 4.14106 4.20315 4.30232 4.67310 4.82507 5.10639 5.19575 5.29545 5.35434 5.65830 5.73579 5.80536 6.14532 6.21080 6.63825 6.79258 6.81664 7.35729 8.88333 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.036703 B = 0.007190 C = 0.006626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.706149 B = 3893.162343 C = 4224.497342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.009 3.991 3 Si 0.960 3.040 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.282 1.282 7 C -0.530 4.530 8 H 0.055 0.945 9 C 0.061 3.939 10 C -0.103 4.103 11 C -0.018 4.018 12 C -0.173 4.173 13 C 0.269 3.731 14 N -0.844 5.844 15 C -0.133 4.133 16 N 0.055 4.945 17 O -0.236 6.236 18 O -0.170 6.170 19 C -0.042 4.042 20 H 0.266 0.734 21 H 0.023 0.977 22 H 0.002 0.998 23 H 0.156 0.844 24 H 0.186 0.814 25 H 0.412 0.588 26 H 0.420 0.580 27 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.529 -11.712 -4.891 15.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.190 4.190 3 Si 0.785 3.215 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.207 1.207 7 C -0.568 4.568 8 H 0.074 0.926 9 C 0.024 3.976 10 C -0.105 4.105 11 C -0.037 4.037 12 C -0.196 4.196 13 C 0.157 3.843 14 N -0.393 5.393 15 C -0.224 4.224 16 N 0.559 4.441 17 O -0.434 6.434 18 O -0.383 6.383 19 C -0.062 4.062 20 H 0.075 0.925 21 H 0.041 0.959 22 H 0.021 0.979 23 H 0.174 0.826 24 H 0.203 0.797 25 H 0.248 0.752 26 H 0.253 0.747 27 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 8.164 -11.328 -5.341 14.950 hybrid contribution 0.290 0.750 0.841 1.164 sum 8.455 -10.578 -4.500 14.270 Atomic orbital electron populations 1.70064 1.07527 1.27895 1.51190 1.25834 0.95673 1.02852 0.94625 0.85470 0.78964 0.79205 0.77858 1.19069 1.19938 1.20746 1.21430 0.93140 0.91238 1.51010 0.92633 1.18065 0.92561 0.90156 0.96860 1.20183 1.00513 0.97856 0.91997 1.21575 0.91670 0.92071 0.98390 1.21159 1.02603 0.99208 0.96600 1.17542 0.88364 0.87962 0.90403 1.43025 1.40183 1.30130 1.26010 1.20843 1.11924 1.08172 0.81462 1.43637 0.98090 0.99080 1.03307 1.94548 1.63987 1.63515 1.21361 1.94181 1.35091 1.15392 1.93635 1.20588 0.93251 0.92153 1.00182 0.92549 0.95911 0.97919 0.82636 0.79665 0.75162 0.74672 0.85641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.81 13.29 21.45 0.28 -53.52 15 2 C 0.01 0.49 5.46 84.65 0.46 0.95 15 3 Si 0.96 42.99 29.54 68.60 2.03 45.02 15 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 15 5 H -0.27 -11.81 7.11 99.48 0.71 -11.10 15 6 H -0.28 -12.51 7.11 99.48 0.71 -11.80 15 7 C -0.53 -28.62 9.09 25.60 0.23 -28.38 15 8 H 0.06 2.96 7.74 -2.91 -0.02 2.93 15 9 C 0.06 2.99 5.10 29.10 0.15 3.14 15 10 C -0.10 -4.05 5.07 -19.84 -0.10 -4.15 15 11 C -0.02 -0.54 9.69 22.25 0.22 -0.32 15 12 C -0.17 -3.98 9.94 22.40 0.22 -3.75 15 13 C 0.27 7.08 6.74 38.22 0.26 7.34 15 14 N -0.84 -15.94 8.50 -51.37 -0.44 -16.38 15 15 C -0.13 -4.59 6.86 36.51 0.25 -4.34 15 16 N 0.06 2.00 4.45 -46.16 -0.21 1.80 15 17 O -0.24 -9.63 18.46 18.89 0.35 -9.29 15 18 O -0.17 -5.51 15.87 18.89 0.30 -5.21 15 19 C -0.04 -1.65 9.20 22.25 0.20 -1.44 15 20 H 0.27 14.49 8.31 -92.71 -0.77 13.72 15 21 H 0.02 1.14 8.09 -2.38 -0.02 1.13 15 22 H 0.00 0.13 8.08 -2.39 -0.02 0.12 15 23 H 0.16 4.12 8.06 -2.91 -0.02 4.10 15 24 H 0.19 2.49 8.06 -2.91 -0.02 2.47 15 25 H 0.41 8.34 6.07 -92.71 -0.56 7.78 15 26 H 0.42 4.71 8.91 -92.71 -0.83 3.88 15 27 H 0.13 5.32 7.62 -2.91 -0.02 5.30 15 Total: -1.00 -64.93 249.53 4.04 -60.88 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -0.17 Total: 7.66 kcal Atomic # 6 Polarization: -32.86 SS G_CDS: 1.89 Total: -30.97 kcal Atomic # 7 Polarization: -67.74 SS G_CDS: -0.36 Total: -68.10 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: 0.65 Total: -14.49 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -64.93 4.04 -60.88 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226192480.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.339 kcal (2) G-P(sol) polarization free energy of solvation -64.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds