Wall clock time and date at job start Thu Apr 9 2020 14:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31541 * 1 3 3 Si 1.86799 * 120.00085 * 2 1 4 4 H 1.48493 * 109.47166 * 240.00498 * 3 2 1 5 5 H 1.48498 * 109.47354 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46998 * 120.00237 * 3 2 1 7 7 C 1.38675 * 119.99572 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99487 * 179.97438 * 7 2 1 9 9 O 1.34781 * 120.00261 * 359.97438 * 7 2 1 10 10 C 1.35559 * 116.99820 * 179.97438 * 9 7 2 11 11 C 1.39526 * 120.19050 * 90.00765 * 10 9 7 12 12 N 1.39796 * 120.03482 * 359.94376 * 11 10 9 13 13 C 1.38631 * 119.92448 * 180.23255 * 11 10 9 14 14 C 1.38481 * 120.32858 * 359.48288 * 13 11 10 15 15 C 1.37841 * 120.39995 * 0.51499 * 14 13 11 16 16 C 1.39742 * 120.06047 * 359.74489 * 15 14 13 17 17 C 1.47537 * 120.16796 * 179.97438 * 16 15 14 18 18 N 1.34777 * 119.99582 * 0.02562 * 17 16 15 19 19 O 1.21592 * 120.00419 * 180.02562 * 17 16 15 20 20 H 0.97008 * 119.99810 * 359.97438 * 1 2 3 21 21 H 0.97001 * 120.00474 * 0.02562 * 12 11 10 22 22 H 0.97005 * 119.99800 * 179.72832 * 12 11 10 23 23 H 1.08003 * 119.83025 * 179.72528 * 13 11 10 24 24 H 1.08003 * 119.80096 * 180.26505 * 14 13 11 25 25 H 1.08000 * 119.96804 * 179.76669 * 15 14 13 26 26 H 0.97002 * 120.00053 * 0.02562 * 18 17 16 27 27 H 0.97007 * 120.00078 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2494 1.6177 0.0000 4 1 3.1031 1.6964 -1.2125 5 1 1.2845 2.7465 0.0006 6 1 3.1032 1.6963 1.2124 7 6 2.0087 -1.2010 -0.0005 8 1 3.0887 -1.2010 -0.0010 9 8 1.3348 -2.3682 -0.0005 10 6 2.0731 -3.5051 -0.0016 11 6 2.4560 -4.0942 1.2038 12 7 2.0797 -3.5120 2.4178 13 6 3.2151 -5.2542 1.1963 14 6 3.5872 -5.8386 -0.0028 15 6 3.2162 -5.2681 -1.2015 16 6 2.4556 -4.0959 -1.2132 17 6 2.0577 -3.4830 -2.4949 18 7 2.4275 -4.0541 -3.6584 19 8 1.3962 -2.4628 -2.5016 20 1 -0.4850 0.8401 0.0004 21 1 1.5518 -2.6982 2.4225 22 1 2.3429 -3.9241 3.2556 23 1 3.5145 -5.7064 2.1303 24 1 4.1750 -6.7446 0.0013 25 1 3.5134 -5.7278 -2.1325 26 1 2.9549 -4.8682 -3.6530 27 1 2.1656 -3.6513 -4.5011 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236217364.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:39 Heat of formation + Delta-G solvation = -61.452043 kcal Electronic energy + Delta-G solvation = -15073.591088 eV Core-core repulsion = 12410.032551 eV Total energy + Delta-G solvation = -2663.558537 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.079 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.14033 -39.36439 -37.86773 -35.30801 -34.24460 -33.88718 -30.94260 -29.16079 -26.81233 -24.84909 -22.70634 -21.46075 -19.86331 -18.95497 -18.14746 -17.86999 -17.09621 -16.42342 -16.20480 -15.72982 -15.37410 -15.15371 -14.85160 -14.56062 -13.70645 -13.31801 -13.29035 -12.79113 -12.70996 -12.21218 -11.89020 -11.58503 -11.42211 -10.71463 -10.48560 -10.15818 -9.49194 -8.27702 -8.04135 -5.77941 0.09587 0.73995 1.34191 1.42628 1.48565 2.17982 2.34705 2.72765 3.11071 3.21229 3.24686 3.90710 4.14450 4.21049 4.49889 4.64417 4.94718 5.10450 5.22135 5.41373 5.57469 5.62620 6.01717 6.08832 6.25338 6.63278 6.70263 7.15088 7.33393 7.62303 8.26294 9.14907 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.026356 B = 0.011994 C = 0.009197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.121865 B = 2333.895791 C = 3043.575762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.034 4.034 3 Si 0.995 3.005 4 H -0.278 1.278 5 H -0.277 1.277 6 H -0.258 1.258 7 C -0.333 4.333 8 H 0.051 0.949 9 O -0.251 6.251 10 C 0.055 3.945 11 C 0.164 3.836 12 N -0.865 5.865 13 C -0.168 4.168 14 C -0.091 4.091 15 C -0.132 4.132 16 C -0.158 4.158 17 C 0.538 3.462 18 N -0.834 5.834 19 O -0.553 6.553 20 H 0.256 0.744 21 H 0.397 0.603 22 H 0.407 0.593 23 H 0.154 0.846 24 H 0.171 0.829 25 H 0.159 0.841 26 H 0.414 0.586 27 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.306 -13.134 -0.450 16.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.227 4.227 3 Si 0.818 3.182 4 H -0.204 1.204 5 H -0.202 1.202 6 H -0.183 1.183 7 C -0.411 4.411 8 H 0.069 0.931 9 O -0.164 6.164 10 C 0.005 3.995 11 C 0.058 3.942 12 N -0.405 5.405 13 C -0.192 4.192 14 C -0.109 4.109 15 C -0.153 4.153 16 C -0.162 4.162 17 C 0.324 3.676 18 N -0.402 5.402 19 O -0.430 6.430 20 H 0.065 0.935 21 H 0.225 0.775 22 H 0.237 0.763 23 H 0.172 0.828 24 H 0.188 0.812 25 H 0.176 0.824 26 H 0.247 0.753 27 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 9.561 -12.368 -0.282 15.635 hybrid contribution 0.055 1.055 -0.186 1.073 sum 9.616 -11.313 -0.468 14.855 Atomic orbital electron populations 1.70184 1.07285 1.26610 1.53651 1.25975 0.96582 1.01232 0.98925 0.84996 0.77377 0.77008 0.78859 1.20394 1.20247 1.18255 1.20812 0.89107 0.82199 1.48960 0.93088 1.83830 1.30564 1.10159 1.91812 1.19363 0.96982 0.91465 0.91730 1.18556 0.94892 0.94357 0.86384 1.42308 1.62326 1.31514 1.04328 1.21008 1.02368 0.94943 1.00851 1.21184 0.99069 1.00346 0.90350 1.21243 0.99250 0.94277 1.00505 1.20432 1.03838 0.99781 0.92187 1.18662 0.79518 0.83708 0.85736 1.43454 1.58582 1.31286 1.06842 1.91019 1.38940 1.25189 1.87883 0.93520 0.77487 0.76257 0.82826 0.81152 0.82367 0.75333 0.76286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -62.78 13.67 21.62 0.30 -62.48 15 2 C -0.03 -2.13 5.49 84.84 0.47 -1.66 15 3 Si 0.99 48.66 29.55 68.60 2.03 50.69 15 4 H -0.28 -13.41 7.11 99.48 0.71 -12.71 15 5 H -0.28 -13.13 7.11 99.48 0.71 -12.42 15 6 H -0.26 -11.57 7.11 99.48 0.71 -10.86 15 7 C -0.33 -20.80 8.75 67.92 0.59 -20.21 15 8 H 0.05 3.12 7.76 -2.91 -0.02 3.10 15 9 O -0.25 -15.49 7.43 0.78 0.01 -15.48 15 10 C 0.05 2.70 5.62 23.04 0.13 2.83 15 11 C 0.16 6.48 6.77 38.28 0.26 6.74 15 12 N -0.87 -31.51 9.08 -51.09 -0.46 -31.98 15 13 C -0.17 -4.77 9.87 22.42 0.22 -4.55 15 14 C -0.09 -2.18 10.02 22.23 0.22 -1.96 15 15 C -0.13 -3.71 9.53 22.54 0.21 -3.50 15 16 C -0.16 -6.61 5.89 -20.01 -0.12 -6.73 15 17 C 0.54 23.88 8.04 86.70 0.70 24.58 15 18 N -0.83 -23.89 8.82 -175.81 -1.55 -25.44 15 19 O -0.55 -32.61 15.20 16.91 0.26 -32.35 15 20 H 0.26 16.18 8.31 -92.70 -0.77 15.41 15 21 H 0.40 17.17 8.17 -92.71 -0.76 16.41 15 22 H 0.41 10.89 8.84 -92.70 -0.82 10.07 15 23 H 0.15 3.16 8.06 -2.91 -0.02 3.13 15 24 H 0.17 2.38 8.06 -2.91 -0.02 2.35 15 25 H 0.16 2.89 6.40 -2.91 -0.02 2.87 15 26 H 0.41 7.89 6.86 -92.71 -0.64 7.25 15 27 H 0.41 10.46 8.93 -92.70 -0.83 9.63 15 Total: -1.00 -88.76 246.44 1.48 -87.28 By element: Atomic # 1 Polarization: 36.03 SS G_CDS: -1.78 Total: 34.25 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: 2.69 Total: -4.47 kcal Atomic # 7 Polarization: -118.19 SS G_CDS: -1.72 Total: -119.91 kcal Atomic # 8 Polarization: -48.10 SS G_CDS: 0.26 Total: -47.84 kcal Atomic # 14 Polarization: 48.66 SS G_CDS: 2.03 Total: 50.69 kcal Total: -88.76 1.48 -87.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236217364.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.824 kcal (2) G-P(sol) polarization free energy of solvation -88.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds