Wall clock time and date at job start Thu Apr 9 2020 14:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31438 * 119.99825 * 2 1 4 4 N 1.40103 * 120.00090 * 0.02562 * 3 2 1 5 5 C 1.34784 * 119.99842 * 179.97438 * 4 3 2 6 6 O 1.22114 * 119.99801 * 0.02562 * 5 4 3 7 7 C 1.39600 * 119.99949 * 179.97438 * 5 4 3 8 8 H 1.08003 * 119.99942 * 353.67249 * 7 5 4 9 9 C 1.40032 * 119.99881 * 173.66521 * 7 5 4 10 10 N 1.30706 * 120.00181 * 6.32122 * 9 7 5 11 11 Si 1.86796 * 119.99605 * 186.31731 * 9 7 5 12 12 H 1.48502 * 109.47458 * 94.98819 * 11 9 7 13 13 H 1.48509 * 109.46938 * 214.98768 * 11 9 7 14 14 H 1.48505 * 109.47444 * 334.98480 * 11 9 7 15 15 C 1.40786 * 119.99960 * 180.02562 * 2 1 3 16 16 C 1.39391 * 126.16341 * 179.97438 * 15 2 1 17 17 C 1.39578 * 106.48540 * 180.02562 * 16 15 2 18 18 C 1.35991 * 107.29425 * 0.02562 * 17 16 15 19 19 O 1.34043 * 109.14256 * 359.97438 * 18 17 16 20 20 H 1.09004 * 109.47385 * 269.99663 * 1 2 3 21 21 H 1.09005 * 109.47371 * 29.99567 * 1 2 3 22 22 H 1.08999 * 109.47484 * 150.00033 * 1 2 3 23 23 H 0.96992 * 120.00095 * 0.02562 * 4 3 2 24 24 H 0.96991 * 120.00010 * 179.97438 * 10 9 7 25 25 H 1.07999 * 126.75722 * 0.02737 * 16 15 2 26 26 H 1.07993 * 126.35706 * 180.02562 * 17 16 15 27 27 H 1.07995 * 125.42596 * 180.26622 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1641 1.1383 0.0000 4 7 1.4636 2.3516 0.0005 5 6 2.1375 3.5189 0.0011 6 8 3.3587 3.5188 0.0006 7 6 1.4395 4.7279 0.0011 8 1 0.3645 4.7307 -0.1024 9 6 2.1333 5.9368 0.1354 10 7 3.4403 5.9437 0.1366 11 14 1.1906 7.5397 0.3129 12 1 1.0454 7.8718 1.7530 13 1 1.9315 8.6283 -0.3739 14 1 -0.1544 7.3935 -0.2995 15 6 2.2109 -1.2192 -0.0005 16 6 3.5967 -1.3689 -0.0011 17 6 3.8468 -2.7421 -0.0021 18 6 2.6418 -3.3725 -0.0027 19 8 1.6654 -2.4542 -0.0016 20 1 -0.3634 -0.0001 1.0277 21 1 -0.3634 0.8900 -0.5138 22 1 -0.3634 -0.8900 -0.5138 23 1 0.4937 2.3516 0.0013 24 1 3.9208 6.7811 0.2293 25 1 4.3322 -0.5780 -0.0008 26 1 4.8172 -3.2161 -0.0024 27 1 2.4951 -4.4424 0.0006 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000254312296.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:56 Heat of formation + Delta-G solvation = -8.505482 kcal Electronic energy + Delta-G solvation = -14210.779353 eV Core-core repulsion = 11549.516751 eV Total energy + Delta-G solvation = -2661.262602 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.33532 -39.80004 -37.75252 -34.83031 -34.02956 -33.57876 -30.25575 -29.47210 -28.18663 -24.17331 -22.62778 -21.94732 -20.53904 -19.79304 -18.08054 -17.59835 -17.08655 -16.96060 -16.04527 -15.49967 -15.36642 -14.83501 -14.37166 -13.96973 -13.90710 -13.43881 -13.29348 -12.96920 -12.92222 -12.69870 -12.39290 -12.00698 -11.05901 -11.03110 -10.91413 -10.17887 -10.02091 -8.67008 -8.46109 -7.13580 -0.06827 1.37004 1.38341 1.47073 1.55373 1.63100 1.94916 2.20978 2.41086 2.65935 3.60884 3.61737 4.06589 4.09260 4.24146 4.45436 4.57175 4.70213 4.94561 5.03490 5.14320 5.20747 5.27424 5.59026 5.79553 5.98716 6.09797 6.64465 6.85678 7.38620 8.37678 8.55164 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.067168 B = 0.005682 C = 0.005258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.763144 B = 4926.702253 C = 5324.370879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.105 3.895 3 N -0.249 5.249 4 N -0.584 5.584 5 C 0.542 3.458 6 O -0.618 6.618 7 C -0.558 4.558 8 H 0.097 0.903 9 C 0.029 3.971 10 N -0.798 5.798 11 Si 1.012 2.988 12 H -0.260 1.260 13 H -0.269 1.269 14 H -0.243 1.243 15 C -0.002 4.002 16 C -0.173 4.173 17 C -0.226 4.226 18 C -0.008 4.008 19 O -0.162 6.162 20 H 0.093 0.907 21 H 0.070 0.930 22 H 0.100 0.900 23 H 0.386 0.614 24 H 0.283 0.717 25 H 0.130 0.870 26 H 0.177 0.823 27 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.545 -13.782 0.257 15.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.081 4.081 3 N -0.062 5.062 4 N -0.332 5.332 5 C 0.352 3.648 6 O -0.504 6.504 7 C -0.594 4.594 8 H 0.115 0.885 9 C -0.190 4.190 10 N -0.425 5.425 11 Si 0.830 3.170 12 H -0.184 1.184 13 H -0.193 1.193 14 H -0.166 1.166 15 C -0.053 4.053 16 C -0.197 4.197 17 C -0.245 4.245 18 C -0.078 4.078 19 O -0.055 6.055 20 H 0.111 0.889 21 H 0.089 0.911 22 H 0.119 0.881 23 H 0.226 0.774 24 H 0.093 0.907 25 H 0.148 0.852 26 H 0.195 0.805 27 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -6.034 -13.138 0.253 14.459 hybrid contribution -0.846 0.530 0.048 0.999 sum -6.880 -12.608 0.301 14.366 Atomic orbital electron populations 1.21166 0.89298 1.04621 1.04475 1.20784 0.95397 0.88908 1.03015 1.75309 1.27180 0.92562 1.11119 1.47348 1.08087 1.01194 1.76547 1.16985 0.87488 0.82110 0.78193 1.90700 1.15792 1.86708 1.57198 1.20063 0.96517 0.90219 1.52602 0.88462 1.27179 0.95603 1.05258 0.90930 1.70235 1.10235 1.29788 1.32267 0.84801 0.78882 0.73781 0.79564 1.18408 1.19317 1.16558 1.18619 0.91031 0.83212 1.12445 1.22623 0.94509 0.98495 1.04091 1.22095 1.01078 0.92225 1.09058 1.25491 0.84499 0.95751 1.02062 1.84018 1.37005 1.13829 1.70661 0.88871 0.91143 0.88080 0.77444 0.90715 0.85186 0.80522 0.72390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 9.41 71.24 0.67 -3.14 15 2 C 0.10 3.98 6.93 43.24 0.30 4.28 15 3 N -0.25 -12.22 10.74 -46.53 -0.50 -12.72 15 4 N -0.58 -29.69 6.12 -181.12 -1.11 -30.80 15 5 C 0.54 33.39 7.61 84.57 0.64 34.03 15 6 O -0.62 -44.40 15.20 -5.69 -0.09 -44.49 15 7 C -0.56 -31.64 9.19 23.03 0.21 -31.43 15 8 H 0.10 4.79 7.85 -2.91 -0.02 4.76 15 9 C 0.03 1.61 5.49 85.30 0.47 2.08 15 10 N -0.80 -48.57 11.71 21.83 0.26 -48.32 15 11 Si 1.01 39.37 29.56 68.60 2.03 41.40 15 12 H -0.26 -9.62 7.11 99.48 0.71 -8.91 15 13 H -0.27 -10.02 7.11 99.48 0.71 -9.31 15 14 H -0.24 -8.60 7.11 99.48 0.71 -7.90 15 15 C 0.00 -0.06 6.89 23.17 0.16 0.10 15 16 C -0.17 -5.90 10.60 22.87 0.24 -5.66 15 17 C -0.23 -5.31 10.86 22.07 0.24 -5.07 15 18 C -0.01 -0.14 12.08 67.30 0.81 0.67 15 19 O -0.16 -4.23 10.28 -7.03 -0.07 -4.30 15 20 H 0.09 2.31 8.14 -2.38 -0.02 2.29 15 21 H 0.07 1.96 6.39 -2.38 -0.02 1.94 15 22 H 0.10 2.29 7.87 -2.39 -0.02 2.28 15 23 H 0.39 16.24 6.43 -213.33 -1.37 14.87 15 24 H 0.28 15.30 8.29 -92.71 -0.77 14.53 15 25 H 0.13 5.10 8.06 -2.91 -0.02 5.08 15 26 H 0.18 3.04 8.06 -2.91 -0.02 3.02 15 27 H 0.26 1.68 8.06 -2.91 -0.02 1.66 15 Total: -1.00 -83.16 253.15 4.10 -79.06 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: -0.17 Total: 24.30 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: 3.75 Total: -4.13 kcal Atomic # 7 Polarization: -90.48 SS G_CDS: -1.35 Total: -91.83 kcal Atomic # 8 Polarization: -48.63 SS G_CDS: -0.16 Total: -48.79 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 2.03 Total: 41.40 kcal Total: -83.16 4.10 -79.06 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254312296.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.553 kcal (2) G-P(sol) polarization free energy of solvation -83.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds