Wall clock time and date at job start Thu Apr 9 2020 14:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30930 * 1 3 3 Si 1.86800 * 120.00337 * 2 1 4 4 H 1.48506 * 109.47016 * 275.40690 * 3 2 1 5 5 H 1.48503 * 109.47044 * 35.40398 * 3 2 1 6 6 H 1.48501 * 109.47199 * 155.40713 * 3 2 1 7 7 C 1.39861 * 119.99666 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00202 * 341.83180 * 7 2 1 9 9 C 1.41039 * 119.99699 * 161.82624 * 7 2 1 10 10 C 1.40872 * 120.24906 * 330.00986 * 9 7 2 11 11 C 1.36249 * 120.03934 * 179.83492 * 10 9 7 12 12 C 1.39610 * 120.64922 * 0.26547 * 11 10 9 13 13 C 1.39192 * 120.23381 * 359.82921 * 12 11 10 14 14 C 1.38626 * 119.94619 * 0.20472 * 13 12 11 15 15 O 1.35783 * 120.18689 * 179.89475 * 14 13 12 16 16 O 1.36236 * 120.81364 * 180.39554 * 13 12 11 17 17 C 1.43172 * 116.68748 * 342.62986 * 16 13 12 18 18 C 1.53468 * 108.19907 * 46.19594 * 17 16 13 19 19 O 1.35991 * 119.13000 * 179.60065 * 12 11 10 20 20 H 0.97006 * 119.99867 * 0.02562 * 1 2 3 21 21 H 1.08003 * 119.98082 * 0.11678 * 10 9 7 22 22 H 1.07998 * 119.67646 * 180.24283 * 11 10 9 23 23 H 0.96693 * 113.99753 * 90.00639 * 15 14 13 24 24 H 1.09006 * 109.71577 * 165.86714 * 17 16 13 25 25 H 1.09001 * 109.71936 * 286.51706 * 17 16 13 26 26 H 1.08998 * 109.70191 * 59.92098 * 18 17 16 27 27 H 1.08994 * 109.70304 * 180.48649 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2434 1.6177 0.0000 4 1 2.3767 2.1123 -1.3939 5 1 1.5026 2.6170 0.8111 6 1 3.5934 1.4098 0.5827 7 6 2.0085 -1.2113 0.0005 8 1 1.5089 -2.1231 0.2926 9 6 3.3662 -1.2419 -0.3804 10 6 3.8622 -0.3117 -1.3148 11 6 5.1752 -0.3430 -1.6773 12 6 6.0406 -1.2950 -1.1352 13 6 5.5705 -2.2245 -0.2119 14 6 4.2376 -2.2087 0.1685 15 8 3.7733 -3.1145 1.0672 16 8 6.4064 -3.1536 0.3305 17 6 7.6449 -3.3802 -0.3512 18 6 8.2619 -2.0165 -0.6902 19 8 7.3435 -1.3034 -1.5250 20 1 -0.4850 0.8401 -0.0004 21 1 3.2023 0.4297 -1.7407 22 1 5.5501 0.3754 -2.3912 23 1 3.8335 -2.8223 1.9870 24 1 8.3223 -3.9402 0.2935 25 1 7.4627 -3.9398 -1.2687 26 1 8.4374 -1.4543 0.2270 27 1 9.2041 -2.1607 -1.2188 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258001253.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:14:35 Heat of formation + Delta-G solvation = -96.969598 kcal Electronic energy + Delta-G solvation = -15162.894946 eV Core-core repulsion = 12465.503501 eV Total energy + Delta-G solvation = -2697.391445 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.27883 -37.55920 -36.47062 -35.00299 -33.50730 -30.72435 -29.05625 -28.00640 -25.11884 -23.52878 -21.24334 -20.36979 -18.09039 -17.71525 -17.10169 -15.91887 -15.65887 -15.28119 -14.31926 -14.28168 -13.80173 -13.73398 -13.36530 -13.04513 -12.82913 -12.11957 -11.73625 -11.48791 -10.89571 -10.65615 -10.57959 -10.12648 -9.88181 -9.72110 -9.44258 -9.04465 -7.42630 -7.18565 -7.04766 -4.51221 2.33561 2.41958 3.04180 3.14479 3.24565 3.79921 3.89669 3.97883 4.33680 4.78765 5.12858 5.20613 5.24643 5.43027 5.61265 5.81368 5.91845 6.20649 6.33867 6.69993 7.00198 7.07878 7.20857 7.44736 7.64148 7.78310 8.23395 8.30847 8.40338 8.67601 8.98973 9.96500 Molecular weight = 222.07amu Principal moments of inertia in cm(-1) A = 0.042050 B = 0.010408 C = 0.008824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.713174 B = 2689.539330 C = 3172.534028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.083 3.917 3 Si 0.910 3.090 4 H -0.267 1.267 5 H -0.288 1.288 6 H -0.244 1.244 7 C -0.425 4.425 8 H 0.100 0.900 9 C 0.080 3.920 10 C -0.221 4.221 11 C -0.068 4.068 12 C -0.077 4.077 13 C 0.071 3.929 14 C -0.009 4.009 15 O -0.477 6.477 16 O -0.309 6.309 17 C 0.022 3.978 18 C 0.025 3.975 19 O -0.316 6.316 20 H 0.288 0.712 21 H 0.114 0.886 22 H 0.109 0.891 23 H 0.358 0.642 24 H 0.106 0.894 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.428 -0.062 0.346 10.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.137 4.137 3 Si 0.736 3.264 4 H -0.193 1.193 5 H -0.215 1.215 6 H -0.167 1.167 7 C -0.453 4.453 8 H 0.118 0.882 9 C 0.076 3.924 10 C -0.240 4.240 11 C -0.087 4.087 12 C -0.121 4.121 13 C 0.026 3.974 14 C -0.056 4.056 15 O -0.284 6.284 16 O -0.224 6.224 17 C -0.054 4.054 18 C -0.051 4.051 19 O -0.233 6.233 20 H 0.098 0.902 21 H 0.131 0.869 22 H 0.127 0.873 23 H 0.211 0.789 24 H 0.124 0.876 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 10.056 -0.347 -0.138 10.063 hybrid contribution 0.539 0.930 0.417 1.153 sum 10.596 0.583 0.279 10.615 Atomic orbital electron populations 1.69733 1.08092 1.30500 1.33781 1.26231 0.94788 1.01779 0.90949 0.86336 0.81315 0.79631 0.79149 1.19279 1.21535 1.16702 1.19338 0.92403 0.96433 1.37127 0.88250 1.17756 0.93293 0.90089 0.91278 1.20505 0.94960 1.05048 1.03505 1.19688 0.92669 0.96271 1.00047 1.18196 0.83683 1.02180 1.08002 1.19149 0.89565 0.90188 0.98520 1.17534 0.86742 1.00128 1.01189 1.84811 1.84918 1.41197 1.17465 1.86300 1.28593 1.56739 1.50768 1.23426 0.86187 0.97189 0.98602 1.23314 0.92856 0.92899 0.96058 1.86118 1.15529 1.72598 1.49019 0.90195 0.86858 0.87267 0.78914 0.87554 0.91478 0.91916 0.87697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.75 13.93 55.54 0.77 -19.98 15 2 C 0.08 2.11 5.40 -17.33 -0.09 2.02 15 3 Si 0.91 20.06 24.52 -169.99 -4.17 15.90 15 4 H -0.27 -5.67 6.71 56.52 0.38 -5.29 15 5 H -0.29 -6.10 7.11 56.52 0.40 -5.70 15 6 H -0.24 -5.52 6.86 56.52 0.39 -5.13 15 7 C -0.43 -11.46 9.18 -37.91 -0.35 -11.81 15 8 H 0.10 2.87 7.89 -52.49 -0.41 2.46 15 9 C 0.08 2.05 5.11 -106.69 -0.55 1.51 15 10 C -0.22 -5.31 7.11 -39.30 -0.28 -5.59 15 11 C -0.07 -1.53 9.88 -39.79 -0.39 -1.92 15 12 C -0.08 -1.74 6.52 -38.72 -0.25 -1.99 15 13 C 0.07 1.65 6.49 -39.08 -0.25 1.40 15 14 C -0.01 -0.23 6.75 -38.29 -0.26 -0.49 15 15 O -0.48 -11.26 12.59 -34.59 -0.44 -11.70 15 16 O -0.31 -6.43 10.17 -45.43 -0.46 -6.89 15 17 C 0.02 0.34 7.27 37.40 0.27 0.61 15 18 C 0.03 0.38 7.25 37.40 0.27 0.65 15 19 O -0.32 -6.28 10.40 -32.51 -0.34 -6.62 15 20 H 0.29 6.72 8.30 -40.82 -0.34 6.38 15 21 H 0.11 2.64 4.73 -52.48 -0.25 2.39 15 22 H 0.11 2.16 8.06 -52.49 -0.42 1.74 15 23 H 0.36 6.93 9.06 45.56 0.41 7.34 15 24 H 0.11 1.21 8.14 -51.93 -0.42 0.79 15 25 H 0.07 1.02 8.14 -51.93 -0.42 0.59 15 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 15 27 H 0.10 1.15 8.14 -51.93 -0.42 0.73 15 LS Contribution 233.86 15.07 3.52 3.52 Total: -1.00 -30.05 233.86 -4.52 -34.57 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -1.53 Total: 6.80 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: -1.88 Total: -15.62 kcal Atomic # 7 Polarization: -20.75 SS G_CDS: 0.77 Total: -19.98 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -1.24 Total: -25.20 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.17 Total: 15.90 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -30.05 -4.52 -34.57 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258001253.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.401 kcal (2) G-P(sol) polarization free energy of solvation -30.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds