Wall clock time and date at job start Thu Apr 9 2020 14:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99897 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99987 * 3 2 1 7 7 C 1.37871 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00483 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 179.72112 * 7 2 1 10 10 H 1.09005 * 108.69048 * 62.07272 * 9 7 2 11 11 C 1.53853 * 108.73445 * 303.97574 * 9 7 2 12 12 C 1.50758 * 108.59449 * 152.63152 * 11 9 7 13 13 S 1.82404 * 111.09026 * 95.90300 * 12 11 9 14 14 C 1.82403 * 105.00543 * 319.18286 * 13 12 11 15 15 C 1.50765 * 111.08263 * 319.17864 * 14 13 12 16 16 C 1.44529 * 108.73128 * 180.27775 * 9 7 2 17 17 F 1.39906 * 108.73064 * 307.71591 * 16 9 7 18 18 F 1.39900 * 108.72711 * 65.89838 * 16 9 7 19 19 H 0.96995 * 120.00181 * 0.02562 * 1 2 3 20 20 H 1.09005 * 109.61919 * 272.35732 * 11 9 7 21 21 H 1.09001 * 109.62039 * 32.89983 * 11 9 7 22 22 H 1.09005 * 109.15459 * 335.49539 * 12 11 9 23 23 H 1.08997 * 109.11431 * 216.29408 * 12 11 9 24 24 H 1.08997 * 109.15658 * 198.76198 * 14 13 12 25 25 H 1.09006 * 109.15595 * 79.58685 * 14 13 12 26 26 H 1.08994 * 109.61790 * 336.19275 * 15 14 13 27 27 H 1.09001 * 109.61657 * 215.64539 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 -0.0058 10 1 3.8647 -0.7077 0.9036 11 6 4.0006 -0.3832 -1.2185 12 6 5.3580 0.1892 -0.8983 13 16 6.6891 -0.8749 -1.5489 14 6 6.1364 -2.5806 -1.2141 15 6 5.5009 -2.6870 0.1489 16 6 3.9757 -2.5627 -0.0105 17 9 3.3568 -3.2505 1.0389 18 9 3.6025 -3.1594 -1.2195 19 1 -0.4850 0.8400 -0.0004 20 1 4.0745 -1.0352 -2.0889 21 1 3.3009 0.4271 -1.4233 22 1 5.4644 0.2739 0.1832 23 1 5.4419 1.1801 -1.3445 24 1 6.9948 -3.2506 -1.2618 25 1 5.4103 -2.8765 -1.9713 26 1 5.8688 -1.8843 0.7879 27 1 5.7451 -3.6524 0.5922 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259688572.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:14:52 Heat of formation + Delta-G solvation = -95.064684 kcal Electronic energy + Delta-G solvation = -14422.795448 eV Core-core repulsion = 11749.843042 eV Total energy + Delta-G solvation = -2672.952406 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.058 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.36472 -46.10562 -36.69535 -33.20050 -31.91101 -29.23609 -25.69831 -23.17102 -21.87127 -19.98175 -17.24733 -17.06385 -16.50134 -15.94385 -15.44234 -14.80068 -13.99478 -13.63722 -13.13953 -12.84821 -12.63959 -12.59058 -12.50324 -12.08012 -11.92908 -11.52509 -11.22831 -11.12212 -10.76935 -10.35260 -10.08166 -9.67491 -9.46554 -9.14408 -8.74034 -7.49715 -6.22650 -4.25335 1.89600 2.72433 3.10777 3.20136 3.26804 4.22607 4.26764 4.72660 4.94718 5.05604 5.20783 5.33895 5.39713 5.45217 5.63676 5.70063 5.86679 5.97795 6.06761 6.31646 6.48003 6.52500 6.98992 7.40560 8.24996 8.81438 9.33754 10.89583 Molecular weight = 222.06amu Principal moments of inertia in cm(-1) A = 0.030857 B = 0.015316 C = 0.011340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.198280 B = 1827.664473 C = 2468.479762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.075 3.925 3 Si 0.882 3.118 4 H -0.274 1.274 5 H -0.294 1.294 6 H -0.261 1.261 7 C -0.518 4.518 8 H 0.083 0.917 9 C -0.044 4.044 10 H 0.054 0.946 11 C -0.128 4.128 12 C -0.077 4.077 13 S -0.294 6.294 14 C -0.082 4.082 15 C -0.167 4.167 16 C 0.324 3.676 17 F -0.201 7.201 18 F -0.203 7.203 19 H 0.267 0.733 20 H 0.079 0.921 21 H 0.083 0.917 22 H 0.085 0.915 23 H 0.095 0.905 24 H 0.105 0.895 25 H 0.106 0.894 26 H 0.097 0.903 27 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.726 -1.649 -0.992 11.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.129 4.129 3 Si 0.712 3.288 4 H -0.202 1.202 5 H -0.221 1.221 6 H -0.185 1.185 7 C -0.555 4.555 8 H 0.101 0.899 9 C -0.064 4.064 10 H 0.071 0.929 11 C -0.167 4.167 12 C -0.225 4.225 13 S -0.069 6.069 14 C -0.230 4.230 15 C -0.207 4.207 16 C 0.288 3.712 17 F -0.182 7.182 18 F -0.184 7.184 19 H 0.077 0.923 20 H 0.098 0.902 21 H 0.100 0.900 22 H 0.104 0.896 23 H 0.114 0.886 24 H 0.123 0.877 25 H 0.124 0.876 26 H 0.116 0.884 27 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 12.446 -1.262 -1.470 12.596 hybrid contribution -0.873 0.514 0.558 1.157 sum 11.573 -0.748 -0.911 11.633 Atomic orbital electron populations 1.69876 1.06237 1.27254 1.49132 1.25003 0.94804 0.98948 0.94098 0.86984 0.80322 0.83557 0.77952 1.20162 1.22098 1.18527 1.20788 0.86753 0.95568 1.52428 0.89878 1.18956 1.00560 0.90523 0.96335 0.92861 1.22055 0.93235 1.01023 1.00343 1.23537 0.95590 0.99575 1.03761 1.86538 1.34112 1.04093 1.82111 1.23185 1.04917 0.94830 1.00034 1.22743 0.94020 1.05603 0.98291 1.19313 0.89561 0.90662 0.71694 1.92980 1.85035 1.81778 1.58381 1.92873 1.92601 1.86140 1.46829 0.92279 0.90202 0.89960 0.89618 0.88635 0.87656 0.87558 0.88401 0.88645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.62 13.96 55.43 0.77 -25.85 15 2 C 0.07 2.08 5.40 -17.82 -0.10 1.99 15 3 Si 0.88 20.55 24.07 -169.99 -4.09 16.46 15 4 H -0.27 -6.17 6.72 56.52 0.38 -5.79 15 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 15 6 H -0.26 -5.57 5.82 56.52 0.33 -5.24 15 7 C -0.52 -14.28 8.37 -34.44 -0.29 -14.57 15 8 H 0.08 2.57 7.64 -52.49 -0.40 2.17 15 9 C -0.04 -0.99 0.84 -95.28 -0.08 -1.07 15 10 H 0.05 1.18 6.37 -51.93 -0.33 0.85 15 11 C -0.13 -2.60 3.98 -27.41 -0.11 -2.71 15 12 C -0.08 -1.32 4.98 36.03 0.18 -1.14 15 13 S -0.29 -4.56 21.98 -107.50 -2.36 -6.92 15 14 C -0.08 -1.18 5.70 36.04 0.21 -0.97 15 15 C -0.17 -2.57 5.26 -27.41 -0.14 -2.72 15 16 C 0.32 6.57 1.38 -30.24 -0.04 6.53 15 17 F -0.20 -4.47 16.02 2.25 0.04 -4.43 15 18 F -0.20 -4.32 13.67 2.25 0.03 -4.29 15 19 H 0.27 7.46 8.31 -40.82 -0.34 7.12 15 20 H 0.08 1.61 6.27 -51.93 -0.33 1.28 15 21 H 0.08 1.81 3.27 -51.93 -0.17 1.64 15 22 H 0.09 1.44 6.61 -51.92 -0.34 1.09 15 23 H 0.10 1.52 8.14 -51.93 -0.42 1.10 15 24 H 0.11 1.24 8.14 -51.93 -0.42 0.81 15 25 H 0.11 1.66 5.74 -51.92 -0.30 1.36 15 26 H 0.10 1.45 6.96 -51.93 -0.36 1.09 15 27 H 0.10 1.26 8.12 -51.93 -0.42 0.84 15 LS Contribution 220.83 15.07 3.33 3.33 Total: -1.00 -29.20 220.83 -5.39 -34.59 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -2.73 Total: 1.79 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: -0.37 Total: -14.67 kcal Atomic # 7 Polarization: -26.62 SS G_CDS: 0.77 Total: -25.85 kcal Atomic # 9 Polarization: -8.79 SS G_CDS: 0.07 Total: -8.72 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.09 Total: 16.46 kcal Atomic # 16 Polarization: -4.56 SS G_CDS: -2.36 Total: -6.92 kcal Total LS contribution 3.33 Total: 3.33 kcal Total: -29.20 -5.39 -34.59 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259688572.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.477 kcal (2) G-P(sol) polarization free energy of solvation -29.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds