Wall clock time and date at job start Thu Apr 9 2020 14:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86799 * 120.00366 * 2 1 4 4 H 1.48503 * 109.46784 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47468 * 119.99436 * 3 2 1 6 6 H 1.48494 * 109.47168 * 240.00241 * 3 2 1 7 7 C 1.37884 * 120.00134 * 180.27057 * 2 1 3 8 8 H 1.07999 * 119.99856 * 335.01914 * 7 2 1 9 9 C 1.50697 * 120.00061 * 155.01191 * 7 2 1 10 10 H 1.08996 * 109.47214 * 54.33265 * 9 7 2 11 11 C 1.53008 * 109.47078 * 294.33157 * 9 7 2 12 12 F 1.39906 * 109.47063 * 177.24371 * 11 9 7 13 13 F 1.39892 * 109.47330 * 297.24619 * 11 9 7 14 14 C 1.53002 * 109.47217 * 174.33579 * 9 7 2 15 15 H 1.08996 * 109.60256 * 60.70047 * 14 9 7 16 16 C 1.52935 * 109.60007 * 300.37557 * 14 9 7 17 17 C 1.53708 * 112.49010 * 209.96743 * 16 14 9 18 18 S 1.83396 * 104.96829 * 2.82886 * 17 16 14 19 19 C 1.55155 * 109.60334 * 181.02453 * 14 9 7 20 20 H 0.97006 * 120.00441 * 174.96388 * 1 2 3 21 21 H 1.08999 * 109.47021 * 57.24958 * 11 9 7 22 22 H 1.09002 * 108.88828 * 330.76302 * 16 14 9 23 23 H 1.09001 * 108.88607 * 89.17555 * 16 14 9 24 24 H 1.09002 * 110.34035 * 121.70111 * 17 16 14 25 25 H 1.08997 * 110.34067 * 243.95363 * 17 16 14 26 26 H 1.08998 * 111.12904 * 279.27745 * 19 14 9 27 27 H 1.08998 * 111.12995 * 43.45759 * 19 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1028 1.6964 1.2126 6 1 3.1028 1.6963 -1.2125 7 6 2.0045 -1.1941 -0.0056 8 1 1.5403 -2.0875 0.3851 9 6 3.4057 -1.2525 -0.5572 10 1 4.0246 -0.5081 -0.0565 11 6 3.3749 -0.9633 -2.0594 12 9 4.6815 -0.9555 -2.5596 13 9 2.6324 -1.9544 -2.7100 14 6 3.9902 -2.6462 -0.3181 15 1 3.3798 -3.3912 -0.8284 16 6 4.0136 -2.9422 1.1821 17 6 5.1649 -3.8804 1.5784 18 16 6.0910 -4.1767 0.0234 19 6 5.4423 -2.7019 -0.8618 20 1 -0.4851 -0.8368 -0.0737 21 1 2.9137 0.0090 -2.2328 22 1 4.1206 -2.0033 1.7254 23 1 3.0681 -3.4048 1.4653 24 1 5.8076 -3.4006 2.3166 25 1 4.7715 -4.8185 1.9698 26 1 5.4522 -2.8580 -1.9405 27 1 5.9978 -1.8039 -0.5914 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260364707.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:22 Heat of formation + Delta-G solvation = -124.078333 kcal Electronic energy + Delta-G solvation = -14048.995321 eV Core-core repulsion = 11374.784788 eV Total energy + Delta-G solvation = -2674.210532 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.058 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -48.04695 -45.96522 -36.77622 -33.15356 -30.74394 -28.38271 -24.85939 -23.78177 -21.28423 -19.18756 -17.91509 -16.89219 -16.23698 -15.72027 -15.51289 -14.52332 -13.93844 -13.74439 -13.41059 -13.03294 -12.48347 -12.35945 -12.21088 -11.79090 -11.46209 -11.27986 -11.20000 -10.72757 -10.60839 -10.31880 -9.97134 -9.89726 -9.48146 -9.09192 -8.45340 -7.42217 -6.74518 -4.37086 2.25342 2.69497 3.14424 3.25536 3.40817 4.24184 4.73524 4.96912 5.05109 5.14901 5.36577 5.37895 5.58951 5.68134 5.86574 5.89944 5.93587 6.13937 6.22896 6.48367 6.55998 6.72888 6.99958 7.69831 8.12934 8.62491 9.29287 10.61272 Molecular weight = 222.06amu Principal moments of inertia in cm(-1) A = 0.032516 B = 0.011680 C = 0.010322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.903471 B = 2396.632895 C = 2712.106823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.039 3.961 3 Si 1.025 2.975 4 H -0.278 1.278 5 H -0.276 1.276 6 H -0.280 1.280 7 C -0.606 4.606 8 H 0.069 0.931 9 C -0.006 4.006 10 H 0.050 0.950 11 C 0.241 3.759 12 F -0.230 7.230 13 F -0.207 7.207 14 C -0.071 4.071 15 H 0.082 0.918 16 C -0.109 4.109 17 C -0.063 4.063 18 S -0.339 6.339 19 C -0.054 4.054 20 H 0.276 0.724 21 H 0.095 0.905 22 H 0.076 0.924 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.106 0.894 27 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.042 -2.165 0.408 8.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.170 4.170 3 Si 0.852 3.148 4 H -0.203 1.203 5 H -0.202 1.202 6 H -0.207 1.207 7 C -0.643 4.643 8 H 0.087 0.913 9 C -0.027 4.027 10 H 0.068 0.932 11 C 0.188 3.812 12 F -0.212 7.212 13 F -0.189 7.189 14 C -0.091 4.091 15 H 0.100 0.900 16 C -0.147 4.147 17 C -0.211 4.211 18 S -0.113 6.113 19 C -0.202 4.202 20 H 0.086 0.914 21 H 0.113 0.887 22 H 0.095 0.905 23 H 0.096 0.904 24 H 0.102 0.898 25 H 0.109 0.891 26 H 0.124 0.876 27 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.608 -1.445 0.146 8.729 hybrid contribution -0.591 -0.823 0.125 1.021 sum 8.016 -2.268 0.271 8.335 Atomic orbital electron populations 1.70813 1.07316 1.31110 1.41605 1.25788 0.96022 1.02255 0.92918 0.84271 0.76006 0.76932 0.77577 1.20266 1.20165 1.20677 1.21673 0.97479 0.98275 1.46848 0.91327 1.20051 0.99892 0.93709 0.89077 0.93232 1.23216 0.73226 0.90964 0.93835 1.92837 1.41065 1.97263 1.90011 1.92861 1.77082 1.65474 1.83459 1.21878 0.92944 0.99527 0.94795 0.89965 1.21831 0.97348 0.99297 0.96249 1.23968 0.98538 1.02813 0.95775 1.87508 1.64908 1.40540 1.18315 1.24779 0.98057 0.95211 1.02163 0.91411 0.88717 0.90529 0.90411 0.89828 0.89137 0.87606 0.89375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.73 13.70 55.43 0.76 -23.97 15 2 C 0.04 1.02 5.21 -17.82 -0.09 0.93 15 3 Si 1.03 22.47 26.53 -169.99 -4.51 17.96 15 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 15 5 H -0.28 -5.74 7.11 56.52 0.40 -5.33 15 6 H -0.28 -5.67 6.16 56.52 0.35 -5.32 15 7 C -0.61 -15.17 7.91 -34.44 -0.27 -15.45 15 8 H 0.07 1.86 7.55 -52.49 -0.40 1.46 15 9 C -0.01 -0.13 1.04 -91.77 -0.10 -0.22 15 10 H 0.05 1.04 6.67 -51.93 -0.35 0.69 15 11 C 0.24 5.17 4.57 37.16 0.17 5.34 15 12 F -0.23 -4.54 14.32 2.25 0.03 -4.50 15 13 F -0.21 -4.73 16.48 2.25 0.04 -4.69 15 14 C -0.07 -1.37 1.96 -89.51 -0.18 -1.55 15 15 H 0.08 1.72 7.72 -51.93 -0.40 1.32 15 16 C -0.11 -1.89 5.07 -26.40 -0.13 -2.02 15 17 C -0.06 -0.94 7.38 37.53 0.28 -0.66 15 18 S -0.34 -5.73 23.22 -107.50 -2.50 -8.22 15 19 C -0.05 -0.96 5.19 38.30 0.20 -0.76 15 20 H 0.28 7.78 8.73 -40.82 -0.36 7.42 15 21 H 0.10 2.04 5.59 -51.93 -0.29 1.75 15 22 H 0.08 1.35 7.78 -51.93 -0.40 0.95 15 23 H 0.08 1.39 7.84 -51.93 -0.41 0.98 15 24 H 0.08 1.12 8.14 -51.93 -0.42 0.70 15 25 H 0.09 1.23 8.14 -51.93 -0.42 0.80 15 26 H 0.11 1.89 6.94 -51.93 -0.36 1.53 15 27 H 0.09 1.49 8.06 -51.93 -0.42 1.07 15 LS Contribution 236.09 15.07 3.56 3.56 Total: -1.00 -26.21 236.09 -5.82 -32.03 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -3.07 Total: 2.24 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: -0.12 Total: -14.39 kcal Atomic # 7 Polarization: -24.73 SS G_CDS: 0.76 Total: -23.97 kcal Atomic # 9 Polarization: -9.27 SS G_CDS: 0.07 Total: -9.20 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.51 Total: 17.96 kcal Atomic # 16 Polarization: -5.73 SS G_CDS: -2.50 Total: -8.22 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -26.21 -5.82 -32.03 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260364707.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.050 kcal (2) G-P(sol) polarization free energy of solvation -26.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds