Wall clock time and date at job start Thu Apr 9 2020 14:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86799 * 120.00366 * 2 1 4 4 H 1.48503 * 109.46784 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47468 * 119.99436 * 3 2 1 6 6 H 1.48494 * 109.47168 * 240.00241 * 3 2 1 7 7 C 1.37884 * 120.00134 * 180.27057 * 2 1 3 8 8 H 1.07999 * 119.99856 * 335.01914 * 7 2 1 9 9 C 1.50697 * 120.00061 * 155.01191 * 7 2 1 10 10 H 1.08996 * 109.47214 * 54.33265 * 9 7 2 11 11 C 1.53008 * 109.47078 * 294.33157 * 9 7 2 12 12 F 1.39906 * 109.47063 * 177.24371 * 11 9 7 13 13 F 1.39892 * 109.47330 * 297.24619 * 11 9 7 14 14 C 1.53002 * 109.47217 * 174.33579 * 9 7 2 15 15 H 1.08996 * 109.60256 * 60.70047 * 14 9 7 16 16 C 1.52935 * 109.60007 * 300.37557 * 14 9 7 17 17 C 1.53708 * 112.49010 * 209.96743 * 16 14 9 18 18 S 1.83396 * 104.96829 * 2.82886 * 17 16 14 19 19 C 1.55155 * 109.60334 * 181.02453 * 14 9 7 20 20 H 0.97006 * 120.00441 * 174.96388 * 1 2 3 21 21 H 1.08999 * 109.47021 * 57.24958 * 11 9 7 22 22 H 1.09002 * 108.88828 * 330.76302 * 16 14 9 23 23 H 1.09001 * 108.88607 * 89.17555 * 16 14 9 24 24 H 1.09002 * 110.34035 * 121.70111 * 17 16 14 25 25 H 1.08997 * 110.34067 * 243.95363 * 17 16 14 26 26 H 1.08998 * 111.12904 * 279.27745 * 19 14 9 27 27 H 1.08998 * 111.12995 * 43.45759 * 19 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1028 1.6964 1.2126 6 1 3.1028 1.6963 -1.2125 7 6 2.0045 -1.1941 -0.0056 8 1 1.5403 -2.0875 0.3851 9 6 3.4057 -1.2525 -0.5572 10 1 4.0246 -0.5081 -0.0565 11 6 3.3749 -0.9633 -2.0594 12 9 4.6815 -0.9555 -2.5596 13 9 2.6324 -1.9544 -2.7100 14 6 3.9902 -2.6462 -0.3181 15 1 3.3798 -3.3912 -0.8284 16 6 4.0136 -2.9422 1.1821 17 6 5.1649 -3.8804 1.5784 18 16 6.0910 -4.1767 0.0234 19 6 5.4423 -2.7019 -0.8618 20 1 -0.4851 -0.8368 -0.0737 21 1 2.9137 0.0090 -2.2328 22 1 4.1206 -2.0033 1.7254 23 1 3.0681 -3.4048 1.4653 24 1 5.8076 -3.4006 2.3166 25 1 4.7715 -4.8185 1.9698 26 1 5.4522 -2.8580 -1.9405 27 1 5.9978 -1.8039 -0.5914 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260364707.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:21 Heat of formation + Delta-G solvation = -138.222912 kcal Electronic energy + Delta-G solvation = -14049.608675 eV Core-core repulsion = 11374.784788 eV Total energy + Delta-G solvation = -2674.823887 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.058 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.76657 -47.70223 -38.35148 -35.03227 -32.38336 -29.90905 -26.50190 -25.50059 -22.89011 -20.78141 -19.86103 -18.51981 -17.95348 -17.32562 -16.98611 -16.06927 -15.71296 -15.29384 -14.91894 -14.62322 -14.15924 -14.06780 -13.80645 -13.45989 -13.03498 -12.91600 -12.67094 -12.36513 -12.13214 -11.97357 -11.67653 -11.49204 -11.03416 -10.78537 -10.44937 -8.84480 -8.70745 -6.43834 0.93683 1.36776 1.43150 1.51544 1.69572 2.44001 2.84167 3.19893 3.58913 3.62310 3.77707 4.06307 4.12599 4.15086 4.25279 4.34447 4.58517 4.70700 4.74165 4.94562 5.01739 5.24389 5.37552 5.81650 5.99813 6.51122 7.30605 8.53371 Molecular weight = 222.06amu Principal moments of inertia in cm(-1) A = 0.032516 B = 0.011680 C = 0.010322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.903471 B = 2396.632895 C = 2712.106823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.006 4.006 3 Si 1.060 2.940 4 H -0.286 1.286 5 H -0.252 1.252 6 H -0.250 1.250 7 C -0.600 4.600 8 H 0.034 0.966 9 C -0.007 4.007 10 H 0.068 0.932 11 C 0.243 3.757 12 F -0.216 7.216 13 F -0.219 7.219 14 C -0.070 4.070 15 H 0.058 0.942 16 C -0.106 4.106 17 C -0.052 4.052 18 S -0.348 6.348 19 C -0.049 4.049 20 H 0.259 0.741 21 H 0.098 0.902 22 H 0.076 0.924 23 H 0.064 0.936 24 H 0.107 0.893 25 H 0.106 0.894 26 H 0.101 0.899 27 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.242 -1.569 0.756 10.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.208 4.208 3 Si 0.880 3.120 4 H -0.212 1.212 5 H -0.176 1.176 6 H -0.174 1.174 7 C -0.637 4.637 8 H 0.052 0.948 9 C -0.029 4.029 10 H 0.086 0.914 11 C 0.189 3.811 12 F -0.198 7.198 13 F -0.201 7.201 14 C -0.091 4.091 15 H 0.076 0.924 16 C -0.145 4.145 17 C -0.199 4.199 18 S -0.122 6.122 19 C -0.196 4.196 20 H 0.069 0.931 21 H 0.116 0.884 22 H 0.095 0.905 23 H 0.083 0.917 24 H 0.126 0.874 25 H 0.125 0.875 26 H 0.119 0.881 27 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 10.832 -0.876 0.491 10.878 hybrid contribution -1.296 -1.112 0.026 1.708 sum 9.536 -1.988 0.517 9.754 Atomic orbital electron populations 1.70946 1.08654 1.30153 1.44981 1.27099 0.95863 1.05861 0.92016 0.83857 0.75571 0.72709 0.79876 1.21184 1.17647 1.17443 1.21713 0.99062 0.96858 1.46073 0.94752 1.20035 0.98056 0.95693 0.89068 0.91440 1.23086 0.73726 0.90749 0.93511 1.92862 1.39926 1.97205 1.89780 1.92845 1.77538 1.66009 1.83673 1.21796 0.93764 0.97432 0.96064 0.92364 1.21757 0.97947 0.99888 0.94867 1.24009 0.97549 1.03218 0.95150 1.87583 1.64931 1.40244 1.19407 1.24645 0.96723 0.96256 1.02001 0.93144 0.88441 0.90505 0.91703 0.87406 0.87536 0.88060 0.88088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.71 13.70 21.45 0.29 -52.42 15 2 C -0.01 -0.32 5.21 84.66 0.44 0.12 15 3 Si 1.06 43.46 26.53 68.60 1.82 45.28 15 4 H -0.29 -12.15 7.11 99.48 0.71 -11.45 15 5 H -0.25 -9.38 7.11 99.48 0.71 -8.67 15 6 H -0.25 -8.98 6.16 99.48 0.61 -8.37 15 7 C -0.60 -30.16 7.91 25.60 0.20 -29.95 15 8 H 0.03 1.92 7.55 -2.91 -0.02 1.90 15 9 C -0.01 -0.30 1.04 -11.54 -0.01 -0.31 15 10 H 0.07 2.61 6.67 -2.39 -0.02 2.59 15 11 C 0.24 9.97 4.57 71.98 0.33 10.30 15 12 F -0.22 -7.93 14.32 44.97 0.64 -7.29 15 13 F -0.22 -9.90 16.48 44.97 0.74 -9.16 15 14 C -0.07 -2.62 1.96 -10.08 -0.02 -2.64 15 15 H 0.06 2.44 7.72 -2.39 -0.02 2.42 15 16 C -0.11 -3.51 5.07 30.81 0.16 -3.36 15 17 C -0.05 -1.39 7.38 72.22 0.53 -0.86 15 18 S -0.35 -10.88 23.22 -56.49 -1.31 -12.19 15 19 C -0.05 -1.59 5.19 72.72 0.38 -1.22 15 20 H 0.26 15.29 8.73 -92.70 -0.81 14.48 15 21 H 0.10 3.98 5.59 -2.39 -0.01 3.97 15 22 H 0.08 2.54 7.78 -2.39 -0.02 2.52 15 23 H 0.06 2.30 7.84 -2.39 -0.02 2.28 15 24 H 0.11 2.46 8.14 -2.39 -0.02 2.44 15 25 H 0.11 2.57 8.14 -2.39 -0.02 2.55 15 26 H 0.10 3.41 6.94 -2.39 -0.02 3.40 15 27 H 0.10 3.07 8.06 -2.39 -0.02 3.05 15 Total: -1.00 -55.81 236.09 5.23 -50.58 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 1.04 Total: 13.11 kcal Atomic # 6 Polarization: -29.92 SS G_CDS: 2.01 Total: -27.91 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: 0.29 Total: -52.42 kcal Atomic # 9 Polarization: -17.83 SS G_CDS: 1.38 Total: -16.45 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 1.82 Total: 45.28 kcal Atomic # 16 Polarization: -10.88 SS G_CDS: -1.31 Total: -12.19 kcal Total: -55.81 5.23 -50.58 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260364707.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.638 kcal (2) G-P(sol) polarization free energy of solvation -55.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds