Wall clock time and date at job start Thu Apr 9 2020 14:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35521 * 117.00020 * 2 1 4 4 N 1.32592 * 120.58966 * 0.02562 * 3 2 1 5 5 C 1.33443 * 120.62485 * 179.97438 * 4 3 2 6 6 C 1.41588 * 119.17285 * 179.97438 * 5 4 3 7 7 H 1.07997 * 120.00075 * 179.97438 * 6 5 4 8 8 C 1.40054 * 120.00115 * 359.97438 * 6 5 4 9 9 N 1.30693 * 119.99893 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00173 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47442 * 60.00022 * 10 8 6 12 12 H 1.48508 * 109.47391 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.47351 * 299.99707 * 10 8 6 14 14 N 1.33604 * 121.65633 * 359.96436 * 5 4 3 15 15 C 1.31616 * 120.57215 * 0.04940 * 14 5 4 16 16 C 1.39015 * 119.36586 * 359.96181 * 15 14 5 17 17 C 1.50806 * 107.36239 * 180.02562 * 16 15 14 18 18 O 1.43999 * 106.01131 * 342.40298 * 17 16 15 19 19 C 1.44155 * 104.94669 * 28.29660 * 18 17 16 20 20 H 1.09001 * 109.47309 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47544 * 300.00075 * 1 2 3 22 22 H 1.08997 * 109.47565 * 60.00233 * 1 2 3 23 23 H 0.97003 * 120.00090 * 180.02562 * 9 8 6 24 24 H 1.09002 * 110.15514 * 101.56077 * 17 16 15 25 25 H 1.09004 * 110.15710 * 223.24968 * 17 16 15 26 26 H 1.08998 * 110.13024 * 212.54102 * 19 18 17 27 27 H 1.09000 * 110.14038 * 90.81913 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 7 1.3335 2.3269 0.0005 5 6 1.9386 3.5162 0.0010 6 6 1.1497 4.6920 0.0010 7 1 1.6254 5.6615 0.0018 8 6 -0.2477 4.5976 -0.0001 9 7 -0.8234 3.4244 -0.0016 10 14 -1.2885 6.1487 -0.0008 11 1 -0.9822 6.9499 -1.2130 12 1 -2.7270 5.7797 -0.0013 13 1 -0.9841 6.9498 1.2120 14 7 3.2702 3.6255 0.0018 15 6 4.0300 2.5509 0.0010 16 6 3.4344 1.2948 0.0003 17 6 4.5421 0.2714 0.0002 18 8 5.7293 0.9712 -0.4176 19 6 5.5240 2.3350 0.0020 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -1.7913 3.3590 -0.0027 24 1 4.6785 -0.1345 1.0025 25 1 4.3125 -0.5306 -0.7014 26 1 6.0026 3.0191 -0.6987 27 1 5.9241 2.4833 1.0050 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260660002.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:38 Heat of formation + Delta-G solvation = -27.673378 kcal Electronic energy + Delta-G solvation = -15053.576675 eV Core-core repulsion = 12391.482890 eV Total energy + Delta-G solvation = -2662.093784 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.079 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.05254 -37.98717 -36.86707 -33.79681 -31.44929 -30.66665 -28.06327 -26.76627 -26.61923 -23.31891 -21.49035 -20.91813 -17.99354 -17.13520 -16.30301 -15.65675 -15.22810 -15.05457 -14.79987 -13.97968 -13.31474 -13.00803 -12.82344 -12.36404 -12.01422 -11.86296 -11.39705 -11.29215 -11.15900 -10.83349 -10.53580 -10.43361 -9.86850 -9.32198 -9.05292 -8.49336 -7.68939 -7.64940 -6.74740 -4.91595 2.39754 2.74848 2.96839 2.99620 3.04042 3.76327 4.06562 4.46203 4.62736 4.85818 5.54015 5.57311 5.89916 5.92926 5.96280 6.01043 6.15435 6.20013 6.27664 6.48448 6.57250 6.77856 6.89422 7.21954 7.29362 7.86330 8.16215 8.35787 8.44680 8.89184 9.93145 10.07852 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.034588 B = 0.010159 C = 0.007925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.333039 B = 2755.540488 C = 3532.479875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 O -0.324 6.324 3 C 0.390 3.610 4 N -0.551 5.551 5 C 0.420 3.580 6 C -0.389 4.389 7 H 0.098 0.902 8 C 0.066 3.934 9 N -0.709 5.709 10 Si 0.924 3.076 11 H -0.262 1.262 12 H -0.276 1.276 13 H -0.262 1.262 14 N -0.583 5.583 15 C 0.175 3.825 16 C -0.409 4.409 17 C 0.134 3.866 18 O -0.372 6.372 19 C 0.110 3.890 20 H 0.074 0.926 21 H 0.058 0.942 22 H 0.058 0.942 23 H 0.277 0.723 24 H 0.051 0.949 25 H 0.076 0.924 26 H 0.097 0.903 27 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.747 -2.418 0.651 2.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.230 6.230 3 C 0.198 3.802 4 N -0.284 5.284 5 C 0.185 3.815 6 C -0.423 4.423 7 H 0.116 0.884 8 C -0.162 4.162 9 N -0.331 5.331 10 Si 0.747 3.253 11 H -0.186 1.186 12 H -0.200 1.200 13 H -0.186 1.186 14 N -0.306 5.306 15 C 0.019 3.981 16 C -0.420 4.420 17 C 0.057 3.943 18 O -0.291 6.291 19 C 0.032 3.968 20 H 0.092 0.908 21 H 0.076 0.924 22 H 0.077 0.923 23 H 0.088 0.912 24 H 0.069 0.931 25 H 0.094 0.906 26 H 0.115 0.885 27 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.161 -2.043 0.538 2.118 hybrid contribution -0.565 -0.053 0.131 0.582 sum -0.404 -2.095 0.668 2.236 Atomic orbital electron populations 1.22609 0.78181 1.00302 1.03278 1.86076 1.22359 1.26382 1.88141 1.19440 0.86727 0.86055 0.87944 1.69221 1.36018 0.96838 1.26305 1.19643 0.84117 0.90158 0.87598 1.19388 0.89898 0.92291 1.40773 0.88434 1.26128 0.98655 0.98012 0.93376 1.70094 1.11259 1.24675 1.27031 0.86106 0.77992 0.80910 0.80260 1.18598 1.20046 1.18610 1.67864 1.06477 1.31136 1.25079 1.21858 0.95963 0.89128 0.91106 1.20649 0.92610 0.97824 1.30898 1.20960 0.81642 0.93238 0.98462 1.89021 1.38979 1.19833 1.81228 1.21399 0.90356 0.84435 1.00568 0.90759 0.92362 0.92348 0.91174 0.93055 0.90586 0.88533 0.90545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.01 10.41 101.05 1.05 2.06 15 2 O -0.32 -7.33 10.50 -18.26 -0.19 -7.52 15 3 C 0.39 9.94 7.53 -16.83 -0.13 9.81 15 4 N -0.55 -15.05 6.82 -12.76 -0.09 -15.14 15 5 C 0.42 11.73 7.37 -158.19 -1.17 10.57 15 6 C -0.39 -10.28 9.37 -37.62 -0.35 -10.63 15 7 H 0.10 2.45 7.85 -52.49 -0.41 2.04 15 8 C 0.07 1.58 5.50 -17.36 -0.10 1.49 15 9 N -0.71 -17.50 11.42 55.55 0.63 -16.87 15 10 Si 0.92 17.65 29.56 -169.99 -5.02 12.63 15 11 H -0.26 -4.96 7.11 56.52 0.40 -4.56 15 12 H -0.28 -5.08 7.11 56.52 0.40 -4.68 15 13 H -0.26 -4.95 7.11 56.52 0.40 -4.55 15 14 N -0.58 -15.54 10.36 -8.84 -0.09 -15.63 15 15 C 0.17 4.19 7.56 -82.27 -0.62 3.57 15 16 C -0.41 -9.80 6.37 -103.89 -0.66 -10.46 15 17 C 0.13 2.67 7.62 36.06 0.27 2.95 15 18 O -0.37 -7.29 11.73 -35.23 -0.41 -7.70 15 19 C 0.11 2.09 7.63 36.13 0.28 2.37 15 20 H 0.07 1.13 8.14 -51.93 -0.42 0.70 15 21 H 0.06 1.19 8.12 -51.93 -0.42 0.77 15 22 H 0.06 1.20 8.12 -51.93 -0.42 0.78 15 23 H 0.28 6.12 8.29 -40.82 -0.34 5.79 15 24 H 0.05 0.94 8.14 -51.93 -0.42 0.52 15 25 H 0.08 1.42 8.14 -51.93 -0.42 1.00 15 26 H 0.10 1.65 8.14 -51.93 -0.42 1.23 15 27 H 0.08 1.28 8.14 -51.93 -0.42 0.86 15 LS Contribution 244.15 15.07 3.68 3.68 Total: -1.00 -29.53 244.15 -5.42 -34.95 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -2.50 Total: -0.10 kcal Atomic # 6 Polarization: 13.13 SS G_CDS: -1.42 Total: 11.71 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: 0.46 Total: -47.65 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.60 Total: -15.22 kcal Atomic # 14 Polarization: 17.65 SS G_CDS: -5.02 Total: 12.63 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -29.53 -5.42 -34.95 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260660002.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.272 kcal (2) G-P(sol) polarization free energy of solvation -29.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds