Wall clock time and date at job start Thu Apr 9 2020 14:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35521 * 117.00020 * 2 1 4 4 N 1.32592 * 120.58966 * 0.02562 * 3 2 1 5 5 C 1.33443 * 120.62485 * 179.97438 * 4 3 2 6 6 C 1.41588 * 119.17285 * 179.97438 * 5 4 3 7 7 H 1.07997 * 120.00075 * 179.97438 * 6 5 4 8 8 C 1.40054 * 120.00115 * 359.97438 * 6 5 4 9 9 N 1.30693 * 119.99893 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00173 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47442 * 60.00022 * 10 8 6 12 12 H 1.48508 * 109.47391 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.47351 * 299.99707 * 10 8 6 14 14 N 1.33604 * 121.65633 * 359.96436 * 5 4 3 15 15 C 1.31616 * 120.57215 * 0.04940 * 14 5 4 16 16 C 1.39015 * 119.36586 * 359.96181 * 15 14 5 17 17 C 1.50806 * 107.36239 * 180.02562 * 16 15 14 18 18 O 1.43999 * 106.01131 * 342.40298 * 17 16 15 19 19 C 1.44155 * 104.94669 * 28.29660 * 18 17 16 20 20 H 1.09001 * 109.47309 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47544 * 300.00075 * 1 2 3 22 22 H 1.08997 * 109.47565 * 60.00233 * 1 2 3 23 23 H 0.97003 * 120.00090 * 180.02562 * 9 8 6 24 24 H 1.09002 * 110.15514 * 101.56077 * 17 16 15 25 25 H 1.09004 * 110.15710 * 223.24968 * 17 16 15 26 26 H 1.08998 * 110.13024 * 212.54102 * 19 18 17 27 27 H 1.09000 * 110.14038 * 90.81913 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 7 1.3335 2.3269 0.0005 5 6 1.9386 3.5162 0.0010 6 6 1.1497 4.6920 0.0010 7 1 1.6254 5.6615 0.0018 8 6 -0.2477 4.5976 -0.0001 9 7 -0.8234 3.4244 -0.0016 10 14 -1.2885 6.1487 -0.0008 11 1 -0.9822 6.9499 -1.2130 12 1 -2.7270 5.7797 -0.0013 13 1 -0.9841 6.9498 1.2120 14 7 3.2702 3.6255 0.0018 15 6 4.0300 2.5509 0.0010 16 6 3.4344 1.2948 0.0003 17 6 4.5421 0.2714 0.0002 18 8 5.7293 0.9712 -0.4176 19 6 5.5240 2.3350 0.0020 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -1.7913 3.3590 -0.0027 24 1 4.6785 -0.1345 1.0025 25 1 4.3125 -0.5306 -0.7014 26 1 6.0026 3.0191 -0.6987 27 1 5.9241 2.4833 1.0050 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260660002.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:38 Heat of formation + Delta-G solvation = -49.515542 kcal Electronic energy + Delta-G solvation = -15054.523822 eV Core-core repulsion = 12391.482890 eV Total energy + Delta-G solvation = -2663.040932 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.079 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.84607 -39.68080 -38.65613 -35.63434 -33.33453 -32.46918 -29.77874 -28.55847 -28.25460 -25.06833 -23.34098 -22.67898 -19.81628 -18.98988 -18.09343 -17.29003 -16.87567 -16.78407 -16.49730 -15.61131 -15.03393 -14.69192 -14.64463 -14.04204 -13.72772 -13.41382 -13.06315 -12.92587 -12.80718 -12.63128 -12.27551 -12.00449 -11.57262 -11.07232 -10.83437 -10.35350 -9.60036 -9.51231 -8.56593 -6.87457 0.53161 0.84871 1.40177 1.51743 1.53822 2.16854 2.33735 2.63172 3.06478 3.14907 3.67115 3.80760 4.10345 4.38496 4.47585 4.54001 4.54743 4.62894 4.72652 4.77762 4.91657 5.04566 5.05331 5.40911 5.68201 5.92858 6.25128 6.45653 6.54707 6.98362 8.02337 8.25283 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.034588 B = 0.010159 C = 0.007925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.333039 B = 2755.540488 C = 3532.479875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.323 6.323 3 C 0.369 3.631 4 N -0.573 5.573 5 C 0.386 3.614 6 C -0.419 4.419 7 H 0.098 0.902 8 C 0.024 3.976 9 N -0.735 5.735 10 Si 1.005 2.995 11 H -0.258 1.258 12 H -0.261 1.261 13 H -0.257 1.257 14 N -0.608 5.608 15 C 0.158 3.842 16 C -0.425 4.425 17 C 0.141 3.859 18 O -0.371 6.371 19 C 0.117 3.883 20 H 0.124 0.876 21 H 0.041 0.959 22 H 0.040 0.960 23 H 0.288 0.712 24 H 0.072 0.928 25 H 0.088 0.912 26 H 0.118 0.882 27 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.758 -2.544 0.783 2.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.229 6.229 3 C 0.178 3.822 4 N -0.307 5.307 5 C 0.151 3.849 6 C -0.453 4.453 7 H 0.116 0.884 8 C -0.201 4.201 9 N -0.356 5.356 10 Si 0.823 3.177 11 H -0.182 1.182 12 H -0.185 1.185 13 H -0.182 1.182 14 N -0.332 5.332 15 C 0.003 3.997 16 C -0.436 4.436 17 C 0.064 3.936 18 O -0.289 6.289 19 C 0.039 3.961 20 H 0.142 0.858 21 H 0.060 0.940 22 H 0.059 0.941 23 H 0.099 0.901 24 H 0.090 0.910 25 H 0.107 0.893 26 H 0.136 0.864 27 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.198 -2.213 0.669 2.320 hybrid contribution -0.556 -0.103 0.089 0.573 sum -0.358 -2.316 0.758 2.463 Atomic orbital electron populations 1.22751 0.76590 1.02949 1.01589 1.86075 1.23856 1.25044 1.87904 1.19841 0.87832 0.86423 0.88129 1.69181 1.36800 0.97236 1.27444 1.20137 0.85112 0.91000 0.88672 1.19775 0.91458 0.92091 1.42010 0.88394 1.27091 0.98923 1.01704 0.92338 1.70145 1.12223 1.26856 1.26402 0.84920 0.76375 0.76116 0.80264 1.18232 1.18530 1.18151 1.67897 1.06374 1.32380 1.26521 1.22748 0.98446 0.88710 0.89774 1.21207 0.93038 0.99446 1.29892 1.21012 0.80195 0.92342 1.00054 1.89018 1.38426 1.19964 1.81496 1.21609 0.87116 0.84490 1.02839 0.85816 0.93980 0.94079 0.90133 0.90963 0.89346 0.86421 0.87709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.16 10.41 113.37 1.18 3.34 15 2 O -0.32 -14.53 10.50 -88.24 -0.93 -15.46 15 3 C 0.37 19.02 7.53 84.83 0.64 19.66 15 4 N -0.57 -32.16 6.82 -307.06 -2.10 -34.26 15 5 C 0.39 22.21 7.37 135.11 1.00 23.21 15 6 C -0.42 -22.73 9.37 23.54 0.22 -22.51 15 7 H 0.10 5.07 7.85 -2.91 -0.02 5.05 15 8 C 0.02 1.17 5.50 85.30 0.47 1.64 15 9 N -0.73 -36.75 11.42 21.84 0.25 -36.50 15 10 Si 1.00 35.86 29.56 68.60 2.03 37.89 15 11 H -0.26 -9.01 7.11 99.48 0.71 -8.30 15 12 H -0.26 -8.63 7.11 99.48 0.71 -7.92 15 13 H -0.26 -8.94 7.11 99.48 0.71 -8.24 15 14 N -0.61 -33.06 10.36 -181.88 -1.88 -34.95 15 15 C 0.16 7.52 7.56 42.86 0.32 7.85 15 16 C -0.43 -20.23 6.37 -19.39 -0.12 -20.35 15 17 C 0.14 5.32 7.62 71.27 0.54 5.86 15 18 O -0.37 -13.52 11.73 -148.98 -1.75 -15.27 15 19 C 0.12 4.18 7.63 71.32 0.54 4.72 15 20 H 0.12 3.47 8.14 -2.39 -0.02 3.45 15 21 H 0.04 1.73 8.12 -2.39 -0.02 1.71 15 22 H 0.04 1.70 8.12 -2.39 -0.02 1.68 15 23 H 0.29 12.72 8.29 -92.71 -0.77 11.95 15 24 H 0.07 2.44 8.14 -2.39 -0.02 2.42 15 25 H 0.09 3.11 8.14 -2.38 -0.02 3.09 15 26 H 0.12 3.73 8.14 -2.39 -0.02 3.71 15 27 H 0.11 3.20 8.14 -2.39 -0.02 3.18 15 Total: -1.00 -64.93 244.15 1.61 -63.33 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 1.19 Total: 11.79 kcal Atomic # 6 Polarization: 18.63 SS G_CDS: 4.79 Total: 23.42 kcal Atomic # 7 Polarization: -101.97 SS G_CDS: -3.73 Total: -105.70 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -2.67 Total: -30.73 kcal Atomic # 14 Polarization: 35.86 SS G_CDS: 2.03 Total: 37.89 kcal Total: -64.93 1.61 -63.33 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260660002.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.811 kcal (2) G-P(sol) polarization free energy of solvation -64.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds