Wall clock time and date at job start Thu Apr 9 2020 14:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30694 * 1 3 3 Si 1.86805 * 119.99745 * 2 1 4 4 H 1.48498 * 109.46909 * 90.00069 * 3 2 1 5 5 H 1.48496 * 109.47072 * 210.00079 * 3 2 1 6 6 H 1.48494 * 109.47142 * 329.99903 * 3 2 1 7 7 C 1.40050 * 120.00167 * 180.27373 * 2 1 3 8 8 H 1.08001 * 120.00311 * 179.97438 * 7 2 1 9 9 C 1.41583 * 120.00152 * 0.02562 * 7 2 1 10 10 N 1.33472 * 119.23367 * 0.02562 * 9 7 2 11 11 C 1.32348 * 120.47982 * 180.08476 * 10 9 7 12 12 O 1.35511 * 120.45369 * 179.97438 * 11 10 9 13 13 C 1.40006 * 119.09165 * 359.90585 * 11 10 9 14 14 C 1.38194 * 118.84593 * 359.95575 * 13 11 10 15 15 N 1.32350 * 119.16507 * 359.91626 * 14 13 11 16 16 C 1.50520 * 121.45604 * 180.28587 * 14 13 11 17 17 O 1.42792 * 110.14423 * 343.94120 * 16 14 13 18 18 C 1.43198 * 113.26598 * 51.77878 * 17 16 14 19 19 C 1.50489 * 119.60652 * 179.79118 * 13 11 10 20 20 H 0.97005 * 120.00041 * 359.72383 * 1 2 3 21 21 H 0.96699 * 114.00063 * 90.00082 * 12 11 10 22 22 H 1.08997 * 109.35596 * 223.73144 * 16 14 13 23 23 H 1.08998 * 109.24729 * 104.07504 * 16 14 13 24 24 H 1.09007 * 109.61595 * 169.62824 * 18 17 16 25 25 H 1.08994 * 109.77489 * 49.15983 * 18 17 16 26 26 H 1.08998 * 109.44505 * 283.40180 * 19 13 11 27 27 H 1.09005 * 109.44053 * 43.32974 * 19 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 2.4884 2.0465 1.4001 5 1 3.5384 1.4403 -0.7000 6 1 1.4383 2.6527 -0.7000 7 6 2.0072 -1.2128 -0.0058 8 1 3.0872 -1.2129 -0.0062 9 6 1.2994 -2.4390 -0.0122 10 7 -0.0352 -2.4212 -0.0131 11 6 -0.7217 -3.5528 -0.0174 12 8 -2.0767 -3.5341 -0.0178 13 6 -0.0287 -4.7693 -0.0229 14 6 1.3531 -4.7495 -0.0247 15 7 1.9815 -3.5847 -0.0228 16 6 2.1568 -6.0221 -0.0369 17 8 1.3307 -7.1290 0.3254 18 6 0.1247 -7.2099 -0.4424 19 6 -0.7977 -6.0629 -0.0230 20 1 -0.4850 0.8401 0.0040 21 1 -2.4696 -3.5256 -0.9013 22 1 2.9790 -5.9370 0.6736 23 1 2.5589 -6.1835 -1.0371 24 1 -0.3673 -8.1637 -0.2516 25 1 0.3568 -7.1236 -1.5039 26 1 -1.1840 -6.2554 0.9779 27 1 -1.6285 -5.9911 -0.7250 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260734752.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:47 Heat of formation + Delta-G solvation = -43.491220 kcal Electronic energy + Delta-G solvation = -15006.572892 eV Core-core repulsion = 12343.793194 eV Total energy + Delta-G solvation = -2662.779697 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.079 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.81611 -37.70016 -36.42350 -33.82343 -31.97001 -31.56239 -29.44910 -26.77095 -25.30550 -22.97412 -21.67318 -20.29611 -18.00659 -17.22808 -16.61629 -15.68756 -15.35947 -15.05934 -14.49130 -13.92373 -13.37375 -13.11560 -12.78152 -12.55282 -12.04965 -11.51505 -11.45516 -11.13296 -11.06069 -10.64893 -10.59588 -10.35434 -9.50579 -9.41151 -8.98899 -8.76885 -7.86789 -7.49540 -6.61089 -4.82145 2.38679 2.62189 3.01409 3.03247 3.07224 3.82357 4.22671 4.46405 4.79905 5.19751 5.38502 5.55964 5.59391 5.69748 5.87881 5.90900 6.16169 6.21972 6.44833 6.50240 6.62041 6.98710 7.08471 7.32016 7.47336 8.02142 8.18312 8.46039 8.63749 8.91940 10.00419 10.15569 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.045865 B = 0.008822 C = 0.007483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.341271 B = 3173.286023 C = 3740.964194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.706 5.706 2 C 0.063 3.937 3 Si 0.921 3.079 4 H -0.266 1.266 5 H -0.258 1.258 6 H -0.275 1.275 7 C -0.394 4.394 8 H 0.097 0.903 9 C 0.406 3.594 10 N -0.517 5.517 11 C 0.363 3.637 12 O -0.489 6.489 13 C -0.345 4.345 14 C 0.167 3.833 15 N -0.592 5.592 16 C 0.119 3.881 17 O -0.380 6.380 18 C 0.061 3.939 19 C -0.068 4.068 20 H 0.277 0.723 21 H 0.386 0.614 22 H 0.108 0.892 23 H 0.064 0.936 24 H 0.089 0.911 25 H 0.048 0.952 26 H 0.061 0.939 27 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.818 -5.723 -2.763 6.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.327 5.327 2 C -0.164 4.164 3 Si 0.745 3.255 4 H -0.191 1.191 5 H -0.182 1.182 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.115 0.885 9 C 0.170 3.830 10 N -0.244 5.244 11 C 0.167 3.833 12 O -0.294 6.294 13 C -0.357 4.357 14 C 0.015 3.985 15 N -0.314 5.314 16 C 0.042 3.958 17 O -0.298 6.298 18 C -0.016 4.016 19 C -0.106 4.106 20 H 0.088 0.912 21 H 0.241 0.759 22 H 0.126 0.874 23 H 0.082 0.918 24 H 0.107 0.893 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.420 -4.784 -2.012 5.207 hybrid contribution -0.559 0.249 -0.647 0.890 sum -0.979 -4.535 -2.659 5.348 Atomic orbital electron populations 1.70151 1.07350 1.28413 1.26808 1.26161 0.95072 1.01585 0.93600 0.86094 0.80316 0.79653 0.79478 1.19138 1.18188 1.19945 1.19419 0.94868 0.87384 1.41234 0.88486 1.19663 0.84159 0.90737 0.88474 1.68930 1.09044 1.26781 1.19667 1.19518 0.83593 0.88483 0.91739 1.84628 1.16015 1.96167 1.32621 1.20212 0.94748 0.95132 1.25558 1.21219 0.90476 0.94610 0.92202 1.68509 1.40484 0.97614 1.24829 1.21096 0.91783 0.81951 1.01006 1.87996 1.33067 1.46802 1.61939 1.22599 0.85752 0.98550 0.94683 1.20364 0.96991 0.92227 1.01059 0.91170 0.75915 0.87413 0.91808 0.89294 0.93318 0.92070 0.91994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.65 11.42 55.55 0.63 -18.02 15 2 C 0.06 1.59 5.50 -17.36 -0.10 1.50 15 3 Si 0.92 18.28 29.56 -169.99 -5.02 13.26 15 4 H -0.27 -5.22 7.11 56.52 0.40 -4.82 15 5 H -0.26 -5.02 7.11 56.52 0.40 -4.61 15 6 H -0.27 -5.28 7.11 56.52 0.40 -4.88 15 7 C -0.39 -10.72 9.37 -37.63 -0.35 -11.07 15 8 H 0.10 2.50 7.85 -52.49 -0.41 2.09 15 9 C 0.41 11.54 7.37 -158.39 -1.17 10.37 15 10 N -0.52 -14.63 7.90 -12.69 -0.10 -14.73 15 11 C 0.36 9.07 7.80 -16.67 -0.13 8.94 15 12 O -0.49 -10.49 12.89 -18.23 -0.23 -10.73 15 13 C -0.35 -7.90 5.82 -104.08 -0.61 -8.51 15 14 C 0.17 3.91 6.71 -82.47 -0.55 3.36 15 15 N -0.59 -15.69 10.26 -9.08 -0.09 -15.78 15 16 C 0.12 2.24 6.93 35.92 0.25 2.49 15 17 O -0.38 -6.85 10.80 -35.23 -0.38 -7.23 15 18 C 0.06 0.95 6.84 37.18 0.25 1.20 15 19 C -0.07 -1.22 5.68 -27.96 -0.16 -1.37 15 20 H 0.28 6.57 8.29 -40.82 -0.34 6.23 15 21 H 0.39 6.21 9.06 45.56 0.41 6.62 15 22 H 0.11 1.92 8.14 -51.93 -0.42 1.49 15 23 H 0.06 1.08 8.14 -51.93 -0.42 0.66 15 24 H 0.09 1.11 8.14 -51.92 -0.42 0.69 15 25 H 0.05 0.71 8.08 -51.93 -0.42 0.29 15 26 H 0.06 1.12 8.14 -51.93 -0.42 0.70 15 27 H 0.06 0.98 7.96 -51.93 -0.41 0.57 15 LS Contribution 239.99 15.07 3.62 3.62 Total: -1.00 -31.90 239.99 -5.80 -37.70 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -1.66 Total: 5.02 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: -2.56 Total: 6.90 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: 0.44 Total: -48.53 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.62 Total: -17.96 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.02 Total: 13.26 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -31.90 -5.80 -37.70 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260734752.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.791 kcal (2) G-P(sol) polarization free energy of solvation -31.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds