Wall clock time and date at job start Thu Apr 9 2020 14:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30694 * 1 3 3 Si 1.86805 * 119.99745 * 2 1 4 4 H 1.48498 * 109.46909 * 90.00069 * 3 2 1 5 5 H 1.48496 * 109.47072 * 210.00079 * 3 2 1 6 6 H 1.48494 * 109.47142 * 329.99903 * 3 2 1 7 7 C 1.40050 * 120.00167 * 180.27373 * 2 1 3 8 8 H 1.08001 * 120.00311 * 179.97438 * 7 2 1 9 9 C 1.41583 * 120.00152 * 0.02562 * 7 2 1 10 10 N 1.33472 * 119.23367 * 0.02562 * 9 7 2 11 11 C 1.32348 * 120.47982 * 180.08476 * 10 9 7 12 12 O 1.35511 * 120.45369 * 179.97438 * 11 10 9 13 13 C 1.40006 * 119.09165 * 359.90585 * 11 10 9 14 14 C 1.38194 * 118.84593 * 359.95575 * 13 11 10 15 15 N 1.32350 * 119.16507 * 359.91626 * 14 13 11 16 16 C 1.50520 * 121.45604 * 180.28587 * 14 13 11 17 17 O 1.42792 * 110.14423 * 343.94120 * 16 14 13 18 18 C 1.43198 * 113.26598 * 51.77878 * 17 16 14 19 19 C 1.50489 * 119.60652 * 179.79118 * 13 11 10 20 20 H 0.97005 * 120.00041 * 359.72383 * 1 2 3 21 21 H 0.96699 * 114.00063 * 90.00082 * 12 11 10 22 22 H 1.08997 * 109.35596 * 223.73144 * 16 14 13 23 23 H 1.08998 * 109.24729 * 104.07504 * 16 14 13 24 24 H 1.09007 * 109.61595 * 169.62824 * 18 17 16 25 25 H 1.08994 * 109.77489 * 49.15983 * 18 17 16 26 26 H 1.08998 * 109.44505 * 283.40180 * 19 13 11 27 27 H 1.09005 * 109.44053 * 43.32974 * 19 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 2.4884 2.0465 1.4001 5 1 3.5384 1.4403 -0.7000 6 1 1.4383 2.6527 -0.7000 7 6 2.0072 -1.2128 -0.0058 8 1 3.0872 -1.2129 -0.0062 9 6 1.2994 -2.4390 -0.0122 10 7 -0.0352 -2.4212 -0.0131 11 6 -0.7217 -3.5528 -0.0174 12 8 -2.0767 -3.5341 -0.0178 13 6 -0.0287 -4.7693 -0.0229 14 6 1.3531 -4.7495 -0.0247 15 7 1.9815 -3.5847 -0.0228 16 6 2.1568 -6.0221 -0.0369 17 8 1.3307 -7.1290 0.3254 18 6 0.1247 -7.2099 -0.4424 19 6 -0.7977 -6.0629 -0.0230 20 1 -0.4850 0.8401 0.0040 21 1 -2.4696 -3.5256 -0.9013 22 1 2.9790 -5.9370 0.6736 23 1 2.5589 -6.1835 -1.0371 24 1 -0.3673 -8.1637 -0.2516 25 1 0.3568 -7.1236 -1.5039 26 1 -1.1840 -6.2554 0.9779 27 1 -1.6285 -5.9911 -0.7250 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260734752.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:47 Heat of formation + Delta-G solvation = -69.614870 kcal Electronic energy + Delta-G solvation = -15007.705698 eV Core-core repulsion = 12343.793194 eV Total energy + Delta-G solvation = -2663.912504 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.079 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.58872 -39.23705 -38.21629 -35.67930 -33.56199 -33.41980 -31.17644 -28.57642 -26.93708 -24.61623 -23.48060 -21.96744 -19.75126 -19.13473 -18.35503 -17.17616 -16.94674 -16.72232 -16.16363 -15.51899 -15.05095 -14.75457 -14.45733 -14.16139 -13.60340 -13.18660 -13.06728 -12.94872 -12.69442 -12.39747 -11.99789 -11.91398 -11.23148 -10.98717 -10.81763 -10.61271 -9.71697 -9.41429 -8.48146 -6.81676 0.51732 0.75417 1.38946 1.48196 1.56060 2.17531 2.59915 2.85821 3.07375 3.53099 3.67673 4.05054 4.16537 4.25477 4.42111 4.45886 4.62077 4.76597 4.82513 4.97471 5.07195 5.13582 5.32153 5.63385 6.03358 6.11279 6.30071 6.54941 6.89058 7.00475 8.07686 8.29648 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.045865 B = 0.008822 C = 0.007483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.341271 B = 3173.286023 C = 3740.964194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.746 5.746 2 C 0.021 3.979 3 Si 1.004 2.996 4 H -0.261 1.261 5 H -0.252 1.252 6 H -0.262 1.262 7 C -0.431 4.431 8 H 0.097 0.903 9 C 0.376 3.624 10 N -0.557 5.557 11 C 0.346 3.654 12 O -0.489 6.489 13 C -0.346 4.346 14 C 0.149 3.851 15 N -0.614 5.614 16 C 0.126 3.874 17 O -0.386 6.386 18 C 0.060 3.940 19 C -0.067 4.067 20 H 0.285 0.715 21 H 0.408 0.592 22 H 0.115 0.885 23 H 0.087 0.913 24 H 0.129 0.871 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.801 -6.619 -3.214 7.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.368 5.368 2 C -0.202 4.202 3 Si 0.822 3.178 4 H -0.185 1.185 5 H -0.175 1.175 6 H -0.186 1.186 7 C -0.466 4.466 8 H 0.115 0.885 9 C 0.139 3.861 10 N -0.285 5.285 11 C 0.151 3.849 12 O -0.297 6.297 13 C -0.356 4.356 14 C -0.001 4.001 15 N -0.337 5.337 16 C 0.049 3.951 17 O -0.303 6.303 18 C -0.016 4.016 19 C -0.105 4.105 20 H 0.096 0.904 21 H 0.267 0.733 22 H 0.133 0.867 23 H 0.105 0.895 24 H 0.146 0.854 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.444 -5.743 -2.481 6.272 hybrid contribution -0.684 0.373 -0.515 0.934 sum -1.128 -5.370 -2.996 6.252 Atomic orbital electron populations 1.70232 1.09133 1.29911 1.27515 1.27165 0.95891 1.04936 0.92242 0.84888 0.78859 0.74279 0.79733 1.18514 1.17518 1.18636 1.19781 0.95166 0.88477 1.43150 0.88469 1.20105 0.84792 0.91896 0.89297 1.68878 1.09343 1.28685 1.21583 1.19923 0.84663 0.88837 0.91487 1.84569 1.14457 1.96096 1.34625 1.20752 0.95062 0.96636 1.23157 1.22092 0.91607 0.95476 0.90942 1.68545 1.40959 0.98257 1.25977 1.21134 0.91371 0.80076 1.02552 1.88004 1.33870 1.45758 1.62705 1.22853 0.84405 0.99204 0.95174 1.20487 0.97716 0.90563 1.01768 0.90412 0.73349 0.86727 0.89506 0.85356 0.91931 0.92311 0.89576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.38 11.42 21.84 0.25 -40.13 15 2 C 0.02 1.09 5.50 85.30 0.47 1.56 15 3 Si 1.00 37.68 29.56 68.60 2.03 39.71 15 4 H -0.26 -9.45 7.11 99.48 0.71 -8.75 15 5 H -0.25 -9.07 7.11 99.48 0.71 -8.37 15 6 H -0.26 -9.21 7.11 99.48 0.71 -8.50 15 7 C -0.43 -24.21 9.37 23.54 0.22 -23.99 15 8 H 0.10 5.20 7.85 -2.91 -0.02 5.17 15 9 C 0.38 22.12 7.37 135.18 1.00 23.12 15 10 N -0.56 -32.41 7.90 -306.96 -2.43 -34.83 15 11 C 0.35 17.40 7.80 85.04 0.66 18.07 15 12 O -0.49 -20.77 12.89 -88.13 -1.14 -21.90 15 13 C -0.35 -15.54 5.82 -19.51 -0.11 -15.66 15 14 C 0.15 6.96 6.71 42.41 0.28 7.24 15 15 N -0.61 -33.24 10.26 -182.64 -1.87 -35.11 15 16 C 0.13 4.50 6.93 71.18 0.49 5.00 15 17 O -0.39 -12.70 10.80 -148.98 -1.61 -14.31 15 18 C 0.06 1.62 6.84 72.00 0.49 2.11 15 19 C -0.07 -2.22 5.68 29.80 0.17 -2.05 15 20 H 0.29 13.76 8.29 -92.70 -0.77 12.99 15 21 H 0.41 12.76 9.06 -74.06 -0.67 12.09 15 22 H 0.11 3.91 8.14 -2.39 -0.02 3.89 15 23 H 0.09 2.72 8.14 -2.39 -0.02 2.70 15 24 H 0.13 2.53 8.14 -2.38 -0.02 2.51 15 25 H 0.06 1.56 8.08 -2.39 -0.02 1.54 15 26 H 0.06 2.00 8.14 -2.39 -0.02 1.98 15 27 H 0.09 2.44 7.96 -2.38 -0.02 2.42 15 Total: -1.00 -70.95 239.99 -0.55 -71.50 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: 0.54 Total: 19.68 kcal Atomic # 6 Polarization: 11.72 SS G_CDS: 3.68 Total: 15.40 kcal Atomic # 7 Polarization: -106.03 SS G_CDS: -4.05 Total: -110.08 kcal Atomic # 8 Polarization: -33.47 SS G_CDS: -2.74 Total: -36.22 kcal Atomic # 14 Polarization: 37.68 SS G_CDS: 2.03 Total: 39.71 kcal Total: -70.95 -0.55 -71.50 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260734752.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.888 kcal (2) G-P(sol) polarization free energy of solvation -70.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds