Wall clock time and date at job start Thu Apr 9 2020 14:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30467 * 1 3 3 Si 1.86805 * 119.99898 * 2 1 4 4 H 1.48498 * 109.47134 * 268.96268 * 3 2 1 5 5 H 1.48498 * 109.47012 * 28.96435 * 3 2 1 6 6 H 1.48497 * 109.47138 * 148.96455 * 3 2 1 7 7 C 1.40534 * 120.00161 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00037 * 346.17348 * 7 2 1 9 9 C 1.40223 * 120.00256 * 166.16519 * 7 2 1 10 10 C 1.39735 * 120.72925 * 329.69158 * 9 7 2 11 11 C 1.40487 * 118.54861 * 180.28294 * 10 9 7 12 12 O 1.35263 * 120.05082 * 179.70623 * 11 10 9 13 13 N 1.32398 * 119.89497 * 359.73026 * 11 10 9 14 14 C 1.33343 * 121.51757 * 359.97438 * 13 11 10 15 15 O 1.21915 * 119.23835 * 180.02562 * 14 13 11 16 16 N 1.34559 * 121.52745 * 359.97438 * 14 13 11 17 17 C 1.46506 * 120.02135 * 179.97438 * 16 14 13 18 18 C 1.53004 * 117.49527 * 47.55945 * 17 16 14 19 19 C 1.52998 * 117.49651 * 116.21514 * 17 16 14 20 20 H 0.97004 * 119.99947 * 359.97438 * 1 2 3 21 21 H 1.08002 * 120.71779 * 359.97438 * 10 9 7 22 22 H 0.96699 * 113.99449 * 180.02562 * 12 11 10 23 23 H 1.08994 * 115.55419 * 261.88790 * 17 16 14 24 24 H 1.09001 * 117.49619 * 215.00368 * 18 17 16 25 25 H 1.09009 * 117.49609 * 0.02562 * 18 17 16 26 26 H 1.09007 * 117.49872 * 359.97438 * 19 17 16 27 27 H 1.08993 * 117.50320 * 144.97699 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3047 0.0000 0.0000 3 14 2.2387 1.6178 0.0000 4 1 2.5081 2.0338 -1.3998 5 1 1.4253 2.6589 0.6780 6 1 3.5251 1.4467 0.7218 7 6 2.0074 -1.2170 0.0005 8 1 1.4908 -2.1388 0.2245 9 6 3.3791 -1.2348 -0.2898 10 6 3.9390 -0.2872 -1.1507 11 6 5.3175 -0.3512 -1.4144 12 8 5.8901 0.5472 -2.2478 13 7 6.0550 -1.2927 -0.8463 14 6 5.5209 -2.1929 -0.0202 15 8 6.2389 -3.0415 0.4804 16 7 4.2080 -2.1858 0.2744 17 6 3.6559 -3.1911 1.1860 18 6 4.4000 -3.4377 2.5000 19 6 3.0606 -2.6968 2.5059 20 1 -0.4850 0.8401 0.0004 21 1 3.3246 0.4747 -1.6072 22 1 6.8415 0.4221 -2.3670 23 1 3.1799 -4.0476 0.7088 24 1 4.4136 -4.4566 2.8871 25 1 5.3000 -2.8517 2.6863 26 1 3.0801 -1.6236 2.6962 27 1 2.1927 -3.2278 2.8968 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260789143.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:49 Heat of formation + Delta-G solvation = -21.776284 kcal Electronic energy + Delta-G solvation = -15299.504672 eV Core-core repulsion = 12637.666605 eV Total energy + Delta-G solvation = -2661.838067 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.079 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.31780 -37.79872 -36.21023 -35.51466 -33.91197 -31.99375 -30.11114 -26.75036 -23.35104 -22.57690 -21.53366 -20.75090 -18.86580 -17.71345 -16.84711 -16.32489 -15.33596 -14.91541 -14.45972 -14.25671 -13.83603 -13.26584 -13.01695 -12.83593 -12.33056 -11.98060 -11.49692 -11.25553 -11.03525 -10.66510 -10.26560 -9.91893 -9.86727 -9.56214 -9.36895 -8.95165 -8.44515 -7.55944 -7.39211 -5.44505 2.04832 2.82966 2.95348 2.96335 3.13478 3.61763 3.66259 4.20904 4.30553 4.43019 5.05657 5.35125 5.36098 5.50413 5.73397 6.09552 6.12336 6.27552 6.39093 6.51379 6.63719 6.73826 6.83929 7.02183 7.47106 7.63586 7.98753 8.10044 8.15364 9.19322 9.39617 9.47227 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.022795 B = 0.016343 C = 0.010406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.037837 B = 1712.809856 C = 2690.205216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.757 5.757 2 C 0.092 3.908 3 Si 0.931 3.069 4 H -0.257 1.257 5 H -0.288 1.288 6 H -0.246 1.246 7 C -0.402 4.402 8 H 0.113 0.887 9 C 0.325 3.675 10 C -0.435 4.435 11 C 0.440 3.560 12 O -0.469 6.469 13 N -0.694 5.694 14 C 0.670 3.330 15 O -0.583 6.583 16 N -0.530 5.530 17 C 0.075 3.925 18 C -0.158 4.158 19 C -0.166 4.166 20 H 0.301 0.699 21 H 0.133 0.867 22 H 0.397 0.603 23 H 0.113 0.887 24 H 0.097 0.903 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.562 1.601 1.709 2.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.377 5.377 2 C -0.136 4.136 3 Si 0.756 3.244 4 H -0.183 1.183 5 H -0.215 1.215 6 H -0.169 1.169 7 C -0.433 4.433 8 H 0.130 0.870 9 C 0.216 3.784 10 C -0.461 4.461 11 C 0.255 3.745 12 O -0.265 6.265 13 N -0.457 5.457 14 C 0.372 3.628 15 O -0.463 6.463 16 N -0.252 5.252 17 C -0.030 4.030 18 C -0.195 4.195 19 C -0.204 4.204 20 H 0.112 0.888 21 H 0.150 0.850 22 H 0.250 0.750 23 H 0.130 0.870 24 H 0.115 0.885 25 H 0.117 0.883 26 H 0.117 0.883 27 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.072 1.240 1.872 2.246 hybrid contribution -0.133 0.659 -0.197 0.701 sum -0.205 1.899 1.675 2.540 Atomic orbital electron populations 1.69418 1.08407 1.32204 1.27715 1.26297 0.95006 1.02336 0.89982 0.85976 0.80174 0.77759 0.80453 1.18272 1.21496 1.16869 1.19379 0.89713 0.97138 1.37080 0.86959 1.17979 0.90547 0.82939 0.86919 1.20401 0.92581 1.13611 1.19529 1.19962 0.89041 0.83387 0.82138 1.84959 1.28719 1.51052 1.61781 1.69128 1.36563 1.14147 1.25883 1.17206 0.79309 0.84746 0.81500 1.90795 1.59260 1.39681 1.56541 1.46068 1.08847 1.29459 1.40812 1.21336 1.03019 0.93506 0.85129 1.23131 0.96200 1.01654 0.98520 1.23223 0.96682 1.01412 0.99101 0.88754 0.84952 0.74999 0.86972 0.88468 0.88284 0.88348 0.88189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -16.60 13.91 55.58 0.77 -15.82 15 2 C 0.09 2.03 5.47 -17.27 -0.09 1.94 15 3 Si 0.93 18.72 24.48 -169.99 -4.16 14.55 15 4 H -0.26 -5.16 6.47 56.52 0.37 -4.79 15 5 H -0.29 -5.44 7.11 56.52 0.40 -5.04 15 6 H -0.25 -5.30 6.92 56.52 0.39 -4.91 15 7 C -0.40 -9.18 8.19 -37.97 -0.31 -9.49 15 8 H 0.11 2.59 7.43 -52.48 -0.39 2.21 15 9 C 0.33 7.69 5.88 -83.69 -0.49 7.20 15 10 C -0.43 -10.28 7.25 -38.18 -0.28 -10.55 15 11 C 0.44 10.23 7.91 -16.46 -0.13 10.10 15 12 O -0.47 -9.03 13.55 -17.48 -0.24 -9.27 15 13 N -0.69 -17.51 10.34 -16.77 -0.17 -17.68 15 14 C 0.67 17.48 8.17 -88.38 -0.72 16.76 15 15 O -0.58 -16.07 15.57 5.00 0.08 -16.00 15 16 N -0.53 -12.56 2.96 -111.94 -0.33 -12.89 15 17 C 0.08 1.51 4.94 -67.93 -0.34 1.18 15 18 C -0.16 -2.83 9.20 -26.69 -0.25 -3.08 15 19 C -0.17 -2.87 9.39 -26.70 -0.25 -3.12 15 20 H 0.30 5.89 8.29 -40.82 -0.34 5.55 15 21 H 0.13 3.04 4.36 -52.49 -0.23 2.81 15 22 H 0.40 5.83 8.98 45.56 0.41 6.24 15 23 H 0.11 2.09 8.14 -51.93 -0.42 1.67 15 24 H 0.10 1.48 8.14 -51.93 -0.42 1.05 15 25 H 0.10 2.00 7.40 -51.92 -0.38 1.62 15 26 H 0.10 1.82 8.14 -51.93 -0.42 1.40 15 27 H 0.10 1.46 8.14 -51.93 -0.42 1.04 15 LS Contribution 236.72 15.07 3.57 3.57 Total: -1.00 -28.95 236.72 -4.81 -33.76 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -1.46 Total: 8.84 kcal Atomic # 6 Polarization: 13.80 SS G_CDS: -2.86 Total: 10.94 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: 0.27 Total: -46.40 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -0.16 Total: -25.26 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -4.16 Total: 14.55 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -28.95 -4.81 -33.76 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260789143.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.982 kcal (2) G-P(sol) polarization free energy of solvation -28.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds