Wall clock time and date at job start Thu Apr 9 2020 14:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31557 * 119.76644 * 2 1 4 4 C 1.33950 * 119.88355 * 179.72967 * 3 2 1 5 5 C 1.41042 * 120.26715 * 180.24511 * 4 3 2 6 6 H 1.08005 * 119.99399 * 209.26665 * 5 4 3 7 7 C 1.40293 * 120.00461 * 29.27517 * 5 4 3 8 8 N 1.30586 * 119.99824 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00171 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47013 * 59.99866 * 9 7 5 11 11 H 1.48506 * 109.47317 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47171 * 300.00173 * 9 7 5 13 13 C 1.41771 * 119.45190 * 0.53687 * 4 3 2 14 14 C 1.47748 * 120.23353 * 179.75260 * 13 4 3 15 15 O 1.21479 * 119.99717 * 5.59900 * 14 13 4 16 16 O 1.34760 * 120.00138 * 185.59305 * 14 13 4 17 17 N 1.32840 * 119.53385 * 359.73409 * 13 4 3 18 18 C 1.31844 * 120.09546 * 359.97438 * 17 13 4 19 19 C 1.50708 * 119.71819 * 179.97438 * 18 17 13 20 20 H 1.09002 * 109.47348 * 269.72963 * 1 2 3 21 21 H 1.09005 * 109.46797 * 29.73027 * 1 2 3 22 22 H 1.09000 * 109.47145 * 149.72655 * 1 2 3 23 23 H 0.97009 * 119.99775 * 179.97438 * 8 7 5 24 24 H 0.96697 * 117.00077 * 180.02562 * 16 14 13 25 25 H 1.09000 * 109.46552 * 270.02473 * 19 18 17 26 26 H 1.09002 * 109.46726 * 30.02226 * 19 18 17 27 27 H 1.08998 * 109.47024 * 150.02623 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1602 1.1420 0.0000 4 6 3.4997 1.1447 0.0055 5 6 4.2080 2.3643 0.0107 6 1 5.1867 2.4223 -0.4425 7 6 3.6416 3.5021 0.6047 8 7 2.4582 3.4321 1.1524 9 14 4.5802 5.1172 0.6123 10 1 4.8504 5.5391 -0.7856 11 1 3.7702 6.1573 1.2961 12 1 5.8663 4.9389 1.3329 13 6 4.1993 -0.0883 -0.0003 14 6 5.6767 -0.1054 0.0001 15 8 6.2961 0.9340 0.1080 16 8 6.3371 -1.2740 -0.1192 17 7 3.5172 -1.2282 -0.0058 18 6 2.1989 -1.2098 -0.0052 19 6 1.4336 -2.5081 -0.0120 20 1 -0.3634 -0.0048 1.0277 21 1 -0.3633 0.8924 -0.5097 22 1 -0.3633 -0.8875 -0.5181 23 1 2.0667 4.2188 1.5634 24 1 7.3032 -1.2349 -0.1134 25 1 1.2492 -2.8156 -1.0413 26 1 2.0158 -3.2756 0.4979 27 1 0.4824 -2.3718 0.5025 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260867558.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:55 Heat of formation + Delta-G solvation = -85.554881 kcal Electronic energy + Delta-G solvation = -14948.911612 eV Core-core repulsion = 12284.307898 eV Total energy + Delta-G solvation = -2664.603715 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.079 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.50968 -40.27464 -36.98302 -36.11900 -34.78155 -33.93085 -30.07762 -29.40669 -27.06484 -24.36213 -23.52006 -21.84979 -19.74424 -19.08917 -17.80602 -17.49998 -16.96882 -16.50308 -15.62122 -15.46217 -14.75140 -14.25416 -13.85200 -13.62996 -13.45335 -13.40683 -13.14955 -12.98717 -12.85363 -12.45856 -12.31327 -12.07749 -11.78650 -11.55534 -11.04078 -11.02611 -9.62048 -9.49278 -8.74899 -6.78904 0.00737 0.80440 1.33035 1.45502 1.48309 1.85675 2.13168 2.39370 2.61965 3.50643 3.78734 3.87299 4.14734 4.44778 4.69355 4.87202 4.89310 4.95500 4.99780 5.05719 5.12267 5.22345 5.36859 5.69459 5.79443 6.15063 6.30081 6.54210 7.01065 7.37348 7.64907 8.09750 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.023998 B = 0.013013 C = 0.008585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.472770 B = 2151.214704 C = 3260.818065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.124 3.876 3 N -0.474 5.474 4 C 0.212 3.788 5 C -0.404 4.404 6 H 0.109 0.891 7 C 0.025 3.975 8 N -0.750 5.750 9 Si 0.996 3.004 10 H -0.254 1.254 11 H -0.253 1.253 12 H -0.264 1.264 13 C -0.154 4.154 14 C 0.546 3.454 15 O -0.543 6.543 16 O -0.507 6.507 17 N -0.388 5.388 18 C -0.068 4.068 19 C -0.067 4.067 20 H 0.087 0.913 21 H 0.065 0.935 22 H 0.106 0.894 23 H 0.296 0.704 24 H 0.417 0.583 25 H 0.075 0.925 26 H 0.061 0.939 27 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.610 -3.325 -0.746 4.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.034 4.034 3 N -0.191 5.191 4 C 0.090 3.910 5 C -0.432 4.432 6 H 0.127 0.873 7 C -0.199 4.199 8 N -0.371 5.371 9 Si 0.814 3.186 10 H -0.178 1.178 11 H -0.176 1.176 12 H -0.188 1.188 13 C -0.292 4.292 14 C 0.394 3.606 15 O -0.435 6.435 16 O -0.319 6.319 17 N -0.104 5.104 18 C -0.220 4.220 19 C -0.125 4.125 20 H 0.105 0.895 21 H 0.084 0.916 22 H 0.124 0.876 23 H 0.108 0.892 24 H 0.277 0.723 25 H 0.094 0.906 26 H 0.080 0.920 27 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.855 -2.835 -0.598 4.068 hybrid contribution 1.232 0.647 0.118 1.396 sum -1.624 -2.188 -0.480 2.767 Atomic orbital electron populations 1.20739 0.86205 1.03943 1.03631 1.23145 0.99693 0.89618 0.90911 1.69238 1.07332 1.27351 1.15202 1.19283 0.89046 0.92802 0.89886 1.20576 1.03049 0.92556 1.27008 0.87313 1.27238 0.95444 1.04419 0.92770 1.69835 1.13932 1.33078 1.20245 0.85050 0.78649 0.74482 0.80371 1.17751 1.17630 1.18797 1.20449 0.90845 0.91223 1.26663 1.20260 0.87622 0.80517 0.72215 1.90726 1.69211 1.34126 1.49468 1.84676 1.27138 1.34642 1.85486 1.67530 1.09201 1.29300 1.04376 1.22206 0.89718 0.97600 1.12451 1.20415 0.98690 0.90573 1.02785 0.89452 0.91582 0.87597 0.89242 0.72329 0.90594 0.92023 0.88853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.81 9.36 71.24 0.67 -2.14 15 2 C 0.12 5.60 6.80 42.87 0.29 5.89 15 3 N -0.47 -25.71 8.59 -175.85 -1.51 -27.22 15 4 C 0.21 12.21 6.34 40.38 0.26 12.47 15 5 C -0.40 -22.81 7.97 23.46 0.19 -22.63 15 6 H 0.11 6.20 5.59 -2.91 -0.02 6.19 15 7 C 0.03 1.29 5.47 85.38 0.47 1.75 15 8 N -0.75 -38.84 11.95 21.88 0.26 -38.58 15 9 Si 1.00 38.59 29.56 68.60 2.03 40.62 15 10 H -0.25 -9.49 7.11 99.48 0.71 -8.79 15 11 H -0.25 -8.78 7.11 99.48 0.71 -8.07 15 12 H -0.26 -10.35 7.11 99.48 0.71 -9.65 15 13 C -0.15 -8.45 6.81 42.38 0.29 -8.17 15 14 C 0.55 27.39 8.28 70.34 0.58 27.98 15 15 O -0.54 -28.67 14.27 19.90 0.28 -28.39 15 16 O -0.51 -20.40 13.27 -56.70 -0.75 -21.16 15 17 N -0.39 -19.55 10.19 -170.68 -1.74 -21.29 15 18 C -0.07 -2.99 6.80 42.83 0.29 -2.69 15 19 C -0.07 -2.03 9.36 71.24 0.67 -1.37 15 20 H 0.09 2.54 8.14 -2.39 -0.02 2.52 15 21 H 0.07 2.18 8.14 -2.38 -0.02 2.16 15 22 H 0.11 2.54 6.68 -2.39 -0.02 2.53 15 23 H 0.30 13.54 8.29 -92.70 -0.77 12.77 15 24 H 0.42 11.43 9.11 -74.06 -0.67 10.75 15 25 H 0.08 2.03 8.14 -2.39 -0.02 2.01 15 26 H 0.06 1.86 8.14 -2.39 -0.02 1.84 15 27 H 0.09 2.24 6.68 -2.39 -0.02 2.22 15 Total: -1.00 -71.25 245.25 2.82 -68.43 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 0.55 Total: 16.48 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: 3.70 Total: 11.10 kcal Atomic # 7 Polarization: -84.09 SS G_CDS: -2.99 Total: -87.08 kcal Atomic # 8 Polarization: -49.08 SS G_CDS: -0.47 Total: -49.55 kcal Atomic # 14 Polarization: 38.59 SS G_CDS: 2.03 Total: 40.62 kcal Total: -71.25 2.82 -68.43 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260867558.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.124 kcal (2) G-P(sol) polarization free energy of solvation -71.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds