Wall clock time and date at job start Thu Apr 9 2020 14:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37733 * 120.00484 * 2 1 4 4 C 1.38320 * 121.26926 * 179.97438 * 3 2 1 5 5 C 1.38979 * 121.20196 * 359.74256 * 4 3 2 6 6 O 1.35611 * 120.04972 * 180.26731 * 5 4 3 7 7 C 1.39936 * 119.88918 * 0.51393 * 5 4 3 8 8 C 1.46928 * 120.59831 * 179.77400 * 7 5 4 9 9 O 1.21571 * 119.99494 * 269.33534 * 8 7 5 10 10 O 1.34842 * 120.00133 * 89.06334 * 8 7 5 11 11 C 1.40693 * 120.00039 * 179.97438 * 2 1 3 12 12 C 1.40833 * 120.57429 * 0.04129 * 11 2 1 13 13 H 1.08005 * 119.99764 * 133.40656 * 12 11 2 14 14 C 1.40274 * 120.00136 * 313.40184 * 12 11 2 15 15 N 1.30628 * 120.00463 * 340.12176 * 14 12 11 16 16 Si 1.86806 * 119.99952 * 160.11976 * 14 12 11 17 17 H 1.48503 * 109.47140 * 60.00143 * 16 14 12 18 18 H 1.48497 * 109.47181 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46796 * 299.99965 * 16 14 12 20 20 H 1.08993 * 109.47285 * 270.02338 * 1 2 3 21 21 H 1.09006 * 109.46924 * 30.02079 * 1 2 3 22 22 H 1.09001 * 109.47437 * 150.01916 * 1 2 3 23 23 H 1.08001 * 119.36148 * 359.95359 * 3 2 1 24 24 H 1.07995 * 119.39691 * 180.02562 * 4 3 2 25 25 H 0.96701 * 113.99487 * 270.24624 * 6 5 4 26 26 H 0.96701 * 116.99993 * 180.27053 * 10 8 7 27 27 H 0.96995 * 120.00038 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1927 0.0000 4 6 3.5786 1.2233 0.0005 5 6 4.3247 0.0507 0.0064 6 8 5.6796 0.1079 0.0123 7 6 3.6754 -1.1889 0.0011 8 6 4.4488 -2.4382 0.0022 9 8 4.7631 -2.9594 -1.0502 10 8 4.8146 -3.0037 1.1704 11 6 2.2105 -1.2184 0.0005 12 6 1.5186 -2.4451 0.0002 13 1 1.8135 -3.2313 -0.6791 14 6 0.4464 -2.6458 0.8822 15 7 0.3244 -1.8946 1.9438 16 14 -0.8071 -3.9876 0.5385 17 1 -0.1234 -5.3053 0.4990 18 1 -1.8321 -3.9944 1.6129 19 1 -1.4617 -3.7301 -0.7693 20 1 -0.3633 0.0004 1.0276 21 1 -0.3633 0.8899 -0.5142 22 1 -0.3634 -0.8901 -0.5135 23 1 1.6454 2.1220 -0.0008 24 1 4.0878 2.1756 0.0009 25 1 6.0762 0.1263 -0.8694 26 1 5.3258 -3.8230 1.1204 27 1 -0.4168 -2.0337 2.5538 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260877692.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:58 Heat of formation + Delta-G solvation = -122.379035 kcal Electronic energy + Delta-G solvation = -15111.833605 eV Core-core repulsion = 12413.340324 eV Total energy + Delta-G solvation = -2698.493281 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.072 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.37479 -37.92623 -36.28785 -35.07511 -33.58036 -30.54869 -30.06311 -26.60928 -24.64944 -23.20363 -20.75275 -19.75410 -18.14487 -17.15802 -16.40267 -15.71216 -15.50285 -14.94873 -14.36629 -13.72549 -13.35171 -12.98152 -12.47606 -12.35160 -12.12134 -11.58643 -11.31417 -11.09007 -10.67676 -10.61513 -10.48248 -10.42247 -10.26768 -9.93071 -9.33444 -9.00185 -7.62665 -7.23049 -6.88547 -4.67977 2.25098 2.57449 3.00957 3.02905 3.05745 3.14717 3.85280 4.16166 4.38946 4.97966 5.13105 5.99223 6.13872 6.28194 6.49258 6.55732 6.81229 6.87922 6.94008 7.00663 7.25591 7.27114 7.41747 7.52926 7.73538 7.82818 8.24113 8.39921 8.59801 8.66166 8.82821 10.05084 Molecular weight = 222.07amu Principal moments of inertia in cm(-1) A = 0.026991 B = 0.013018 C = 0.009677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.123377 B = 2150.431783 C = 2892.900770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.142 4.142 3 C -0.067 4.067 4 C -0.248 4.248 5 C 0.156 3.844 6 O -0.509 6.509 7 C -0.243 4.243 8 C 0.576 3.424 9 O -0.542 6.542 10 O -0.507 6.507 11 C 0.175 3.825 12 C -0.479 4.479 13 H 0.085 0.915 14 C 0.087 3.913 15 N -0.778 5.778 16 Si 0.903 3.097 17 H -0.265 1.265 18 H -0.276 1.276 19 H -0.261 1.261 20 H 0.069 0.931 21 H 0.029 0.971 22 H 0.059 0.941 23 H 0.101 0.899 24 H 0.105 0.895 25 H 0.379 0.621 26 H 0.391 0.609 27 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.725 1.187 -1.366 1.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.143 4.143 3 C -0.086 4.086 4 C -0.267 4.267 5 C 0.112 3.888 6 O -0.318 6.318 7 C -0.246 4.246 8 C 0.422 3.578 9 O -0.433 6.433 10 O -0.316 6.316 11 C 0.172 3.828 12 C -0.508 4.508 13 H 0.102 0.898 14 C -0.133 4.133 15 N -0.402 5.402 16 Si 0.727 3.273 17 H -0.189 1.189 18 H -0.201 1.201 19 H -0.185 1.185 20 H 0.088 0.912 21 H 0.048 0.952 22 H 0.078 0.922 23 H 0.119 0.881 24 H 0.123 0.877 25 H 0.233 0.767 26 H 0.247 0.753 27 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.357 1.456 -0.778 1.689 hybrid contribution -0.078 -1.122 -0.507 1.234 sum 0.279 0.334 -1.285 1.357 Atomic orbital electron populations 1.20617 0.92408 0.99500 1.01502 1.19883 0.95289 0.91926 1.07194 1.20466 0.93166 0.96754 0.98185 1.20464 0.93929 0.95788 1.16561 1.18089 0.80938 0.91079 0.98726 1.84685 1.17762 1.96518 1.32839 1.20268 0.94216 0.88210 1.21880 1.20763 0.73610 0.83360 0.80112 1.90777 1.54690 1.64342 1.33455 1.84865 1.68397 1.41875 1.36433 1.18021 0.86521 0.93186 0.85064 1.19314 1.12849 0.99883 1.18745 0.89757 1.25737 0.97140 0.96959 0.93468 1.69746 1.27805 1.35115 1.07566 0.86442 0.80027 0.81445 0.79434 1.18905 1.20062 1.18496 0.91239 0.95180 0.92224 0.88113 0.87695 0.76670 0.75307 0.90364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.81 8.28 36.01 0.30 -1.51 15 2 C -0.14 -3.39 5.59 -103.88 -0.58 -3.97 15 3 C -0.07 -1.46 9.61 -39.74 -0.38 -1.84 15 4 C -0.25 -5.34 9.93 -39.28 -0.39 -5.73 15 5 C 0.16 3.58 6.72 -38.67 -0.26 3.32 15 6 O -0.51 -10.29 12.96 -18.53 -0.24 -10.53 15 7 C -0.24 -6.14 5.95 -102.41 -0.61 -6.75 15 8 C 0.58 13.96 6.57 34.25 0.22 14.18 15 9 O -0.54 -13.57 17.90 -19.32 -0.35 -13.92 15 10 O -0.51 -10.85 13.44 -40.88 -0.55 -11.40 15 11 C 0.18 4.55 5.39 -104.65 -0.56 3.99 15 12 C -0.48 -12.44 7.58 -37.84 -0.29 -12.73 15 13 H 0.08 2.23 7.91 -52.48 -0.42 1.81 15 14 C 0.09 2.09 3.47 -17.30 -0.06 2.03 15 15 N -0.78 -19.11 10.74 55.56 0.60 -18.51 15 16 Si 0.90 18.15 29.61 -169.99 -5.03 13.12 15 17 H -0.26 -5.37 7.11 56.52 0.40 -4.97 15 18 H -0.28 -5.33 7.11 56.52 0.40 -4.93 15 19 H -0.26 -5.16 7.11 56.52 0.40 -4.76 15 20 H 0.07 1.54 6.63 -51.93 -0.34 1.20 15 21 H 0.03 0.55 8.08 -51.93 -0.42 0.13 15 22 H 0.06 1.32 6.37 -51.93 -0.33 0.99 15 23 H 0.10 1.88 8.06 -52.49 -0.42 1.45 15 24 H 0.10 1.98 8.06 -52.49 -0.42 1.56 15 25 H 0.38 5.84 9.06 45.56 0.41 6.25 15 26 H 0.39 5.98 9.11 45.56 0.42 6.39 15 27 H 0.29 6.37 8.29 -40.82 -0.34 6.03 15 LS Contribution 246.62 15.07 3.72 3.72 Total: -1.00 -30.25 246.62 -5.13 -35.37 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -0.66 Total: 11.15 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -2.61 Total: -9.00 kcal Atomic # 7 Polarization: -19.11 SS G_CDS: 0.60 Total: -18.51 kcal Atomic # 8 Polarization: -34.71 SS G_CDS: -1.14 Total: -35.85 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.03 Total: 13.12 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -30.25 -5.13 -35.37 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260877692.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.007 kcal (2) G-P(sol) polarization free energy of solvation -30.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds