Wall clock time and date at job start Thu Apr 9 2020 14:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37733 * 120.00484 * 2 1 4 4 C 1.38320 * 121.26926 * 179.97438 * 3 2 1 5 5 C 1.38979 * 121.20196 * 359.74256 * 4 3 2 6 6 O 1.35611 * 120.04972 * 180.26731 * 5 4 3 7 7 C 1.39936 * 119.88918 * 0.51393 * 5 4 3 8 8 C 1.46928 * 120.59831 * 179.77400 * 7 5 4 9 9 O 1.21571 * 119.99494 * 269.33534 * 8 7 5 10 10 O 1.34842 * 120.00133 * 89.06334 * 8 7 5 11 11 C 1.40693 * 120.00039 * 179.97438 * 2 1 3 12 12 C 1.40833 * 120.57429 * 0.04129 * 11 2 1 13 13 H 1.08005 * 119.99764 * 133.40656 * 12 11 2 14 14 C 1.40274 * 120.00136 * 313.40184 * 12 11 2 15 15 N 1.30628 * 120.00463 * 340.12176 * 14 12 11 16 16 Si 1.86806 * 119.99952 * 160.11976 * 14 12 11 17 17 H 1.48503 * 109.47140 * 60.00143 * 16 14 12 18 18 H 1.48497 * 109.47181 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46796 * 299.99965 * 16 14 12 20 20 H 1.08993 * 109.47285 * 270.02338 * 1 2 3 21 21 H 1.09006 * 109.46924 * 30.02079 * 1 2 3 22 22 H 1.09001 * 109.47437 * 150.01916 * 1 2 3 23 23 H 1.08001 * 119.36148 * 359.95359 * 3 2 1 24 24 H 1.07995 * 119.39691 * 180.02562 * 4 3 2 25 25 H 0.96701 * 113.99487 * 270.24624 * 6 5 4 26 26 H 0.96701 * 116.99993 * 180.27053 * 10 8 7 27 27 H 0.96995 * 120.00038 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1927 0.0000 4 6 3.5786 1.2233 0.0005 5 6 4.3247 0.0507 0.0064 6 8 5.6796 0.1079 0.0123 7 6 3.6754 -1.1889 0.0011 8 6 4.4488 -2.4382 0.0022 9 8 4.7631 -2.9594 -1.0502 10 8 4.8146 -3.0037 1.1704 11 6 2.2105 -1.2184 0.0005 12 6 1.5186 -2.4451 0.0002 13 1 1.8135 -3.2313 -0.6791 14 6 0.4464 -2.6458 0.8822 15 7 0.3244 -1.8946 1.9438 16 14 -0.8071 -3.9876 0.5385 17 1 -0.1234 -5.3053 0.4990 18 1 -1.8321 -3.9944 1.6129 19 1 -1.4617 -3.7301 -0.7693 20 1 -0.3633 0.0004 1.0276 21 1 -0.3633 0.8899 -0.5142 22 1 -0.3634 -0.8901 -0.5135 23 1 1.6454 2.1220 -0.0008 24 1 4.0878 2.1756 0.0009 25 1 6.0762 0.1263 -0.8694 26 1 5.3258 -3.8230 1.1204 27 1 -0.4168 -2.0337 2.5538 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260877692.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:57 Heat of formation + Delta-G solvation = -144.035605 kcal Electronic energy + Delta-G solvation = -15112.772704 eV Core-core repulsion = 12413.340324 eV Total energy + Delta-G solvation = -2699.432380 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.17722 -39.66589 -37.97934 -36.88851 -35.35187 -32.30796 -31.82458 -28.40524 -26.38991 -25.01402 -22.50487 -21.52051 -19.87628 -18.98457 -18.18103 -17.48789 -17.26903 -16.69180 -16.02041 -15.50248 -15.06799 -14.66593 -14.20679 -14.08029 -13.81940 -13.32250 -13.02705 -12.75806 -12.48341 -12.30036 -12.17300 -12.09040 -11.98533 -11.71164 -11.08880 -10.77384 -9.41907 -9.00973 -8.66305 -6.56390 0.47682 0.83292 1.27991 1.37891 1.43199 1.48086 2.19703 2.47269 2.62565 3.24687 3.44048 4.36166 4.47974 4.57846 4.81079 4.87060 5.06839 5.18699 5.21038 5.24349 5.56118 5.58234 5.67186 5.77792 5.97715 6.07692 6.42072 6.67240 6.81363 6.94473 7.11916 8.29309 Molecular weight = 222.07amu Principal moments of inertia in cm(-1) A = 0.026991 B = 0.013018 C = 0.009677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.123377 B = 2150.431783 C = 2892.900770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.164 4.164 3 C -0.065 4.065 4 C -0.243 4.243 5 C 0.151 3.849 6 O -0.510 6.510 7 C -0.281 4.281 8 C 0.577 3.423 9 O -0.561 6.561 10 O -0.509 6.509 11 C 0.145 3.855 12 C -0.512 4.512 13 H 0.063 0.937 14 C 0.060 3.940 15 N -0.803 5.803 16 Si 0.962 3.038 17 H -0.270 1.270 18 H -0.259 1.259 19 H -0.256 1.256 20 H 0.061 0.939 21 H 0.059 0.941 22 H 0.046 0.954 23 H 0.137 0.863 24 H 0.137 0.863 25 H 0.401 0.599 26 H 0.416 0.584 27 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.313 2.155 -1.246 2.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.165 4.165 3 C -0.084 4.084 4 C -0.262 4.262 5 C 0.107 3.893 6 O -0.323 6.323 7 C -0.284 4.284 8 C 0.423 3.577 9 O -0.454 6.454 10 O -0.321 6.321 11 C 0.143 3.857 12 C -0.540 4.540 13 H 0.082 0.918 14 C -0.158 4.158 15 N -0.428 5.428 16 Si 0.783 3.217 17 H -0.195 1.195 18 H -0.183 1.183 19 H -0.180 1.180 20 H 0.080 0.920 21 H 0.078 0.922 22 H 0.065 0.935 23 H 0.154 0.846 24 H 0.155 0.845 25 H 0.258 0.742 26 H 0.276 0.724 27 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.026 2.424 -0.655 2.511 hybrid contribution 0.201 -1.352 -0.531 1.466 sum 0.175 1.072 -1.186 1.608 Atomic orbital electron populations 1.20536 0.91222 1.00318 1.01156 1.20231 0.96500 0.92114 1.07639 1.20871 0.93567 0.97417 0.96500 1.20874 0.94104 0.96570 1.14633 1.18275 0.82027 0.90899 0.98137 1.84617 1.16490 1.96387 1.34760 1.20678 0.94644 0.89600 1.23444 1.20761 0.73294 0.83338 0.80304 1.90747 1.55613 1.64902 1.34095 1.84792 1.68624 1.43359 1.35278 1.18398 0.87199 0.94194 0.85955 1.19324 1.14928 0.99910 1.19868 0.91845 1.26317 0.97988 0.98842 0.92663 1.69757 1.28574 1.36448 1.08031 0.85559 0.77975 0.78366 0.79811 1.19479 1.18305 1.18039 0.92034 0.92183 0.93505 0.84563 0.84512 0.74163 0.72432 0.89516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.20 8.28 71.24 0.59 -2.61 15 2 C -0.16 -7.69 5.59 -19.38 -0.11 -7.80 15 3 C -0.07 -2.67 9.61 22.17 0.21 -2.46 15 4 C -0.24 -9.82 9.93 22.47 0.22 -9.59 15 5 C 0.15 6.76 6.72 22.86 0.15 6.91 15 6 O -0.51 -19.74 12.96 -89.22 -1.16 -20.89 15 7 C -0.28 -14.27 5.95 -18.43 -0.11 -14.38 15 8 C 0.58 28.22 6.57 70.10 0.46 28.68 15 9 O -0.56 -28.46 17.90 19.60 0.35 -28.11 15 10 O -0.51 -21.74 13.44 -57.55 -0.77 -22.51 15 11 C 0.15 7.64 5.39 -19.88 -0.11 7.54 15 12 C -0.51 -27.20 7.58 23.40 0.18 -27.03 15 13 H 0.06 3.51 7.91 -2.91 -0.02 3.48 15 14 C 0.06 2.88 3.47 85.37 0.30 3.18 15 15 N -0.80 -39.41 10.74 21.88 0.24 -39.17 15 16 Si 0.96 37.14 29.61 68.60 2.03 39.17 15 17 H -0.27 -10.56 7.11 99.48 0.71 -9.85 15 18 H -0.26 -9.22 7.11 99.48 0.71 -8.51 15 19 H -0.26 -9.63 7.11 99.48 0.71 -8.92 15 20 H 0.06 2.67 6.63 -2.39 -0.02 2.66 15 21 H 0.06 2.09 8.08 -2.38 -0.02 2.07 15 22 H 0.05 2.05 6.37 -2.39 -0.02 2.04 15 23 H 0.14 4.53 8.06 -2.91 -0.02 4.50 15 24 H 0.14 4.60 8.06 -2.91 -0.02 4.58 15 25 H 0.40 11.57 9.06 -74.06 -0.67 10.90 15 26 H 0.42 12.47 9.11 -74.06 -0.67 11.79 15 27 H 0.29 12.98 8.29 -92.71 -0.77 12.21 15 Total: -1.00 -64.50 246.62 2.36 -62.14 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: -0.11 Total: 26.94 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: 1.79 Total: -17.56 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 0.24 Total: -39.17 kcal Atomic # 8 Polarization: -69.94 SS G_CDS: -1.58 Total: -71.52 kcal Atomic # 14 Polarization: 37.14 SS G_CDS: 2.03 Total: 39.17 kcal Total: -64.50 2.36 -62.14 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260877692.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.894 kcal (2) G-P(sol) polarization free energy of solvation -64.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds