Wall clock time and date at job start Thu Apr 9 2020 14:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86805 * 119.99919 * 2 1 4 4 H 1.48496 * 109.47364 * 270.00174 * 3 2 1 5 5 H 1.48497 * 109.47215 * 30.00420 * 3 2 1 6 6 H 1.48501 * 109.46872 * 150.00294 * 3 2 1 7 7 C 1.40103 * 120.00085 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00463 * 179.97438 * 7 2 1 9 9 C 1.41541 * 119.99860 * 0.02562 * 7 2 1 10 10 N 1.34052 * 120.67211 * 359.97438 * 9 7 2 11 11 C 1.31910 * 120.40449 * 180.11453 * 10 9 7 12 12 O 1.35451 * 119.01119 * 180.08675 * 11 10 9 13 13 N 1.32514 * 121.96797 * 0.06352 * 11 10 9 14 14 C 1.32680 * 121.26292 * 359.97402 * 13 11 10 15 15 C 1.37804 * 119.11268 * 359.83355 * 14 13 11 16 16 C 1.50427 * 121.66986 * 180.36375 * 15 14 13 17 17 C 1.53065 * 109.65149 * 343.31267 * 16 15 14 18 18 O 1.43210 * 108.53836 * 48.82035 * 17 16 15 19 19 C 1.42795 * 113.26621 * 289.46403 * 18 17 16 20 20 H 0.97002 * 119.99740 * 359.97438 * 1 2 3 21 21 H 0.96702 * 113.99959 * 90.00832 * 12 11 10 22 22 H 1.08998 * 109.44268 * 223.26113 * 16 15 14 23 23 H 1.08998 * 109.41084 * 103.34646 * 16 15 14 24 24 H 1.09003 * 109.63006 * 289.10644 * 17 16 15 25 25 H 1.08997 * 109.78814 * 168.62648 * 17 16 15 26 26 H 1.09000 * 109.35755 * 171.96324 * 19 18 17 27 27 H 1.08994 * 109.36443 * 291.55130 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4882 2.0465 -1.4000 5 1 1.4382 2.6527 0.7001 6 1 3.5383 1.4402 0.7000 7 6 2.0072 -1.2133 -0.0005 8 1 3.0873 -1.2134 -0.0010 9 6 1.2995 -2.4391 -0.0016 10 7 -0.0409 -2.4548 -0.0017 11 6 -0.6951 -3.6002 -0.0004 12 8 -2.0495 -3.5832 -0.0022 13 7 -0.0669 -4.7670 0.0021 14 6 1.2581 -4.8356 0.0031 15 6 1.9899 -3.6679 -0.0022 16 6 3.4941 -3.6786 -0.0096 17 6 4.0011 -5.0625 0.4037 18 8 3.3015 -6.0508 -0.3609 19 6 1.9288 -6.1830 0.0096 20 1 -0.4850 0.8401 0.0004 21 1 -2.4417 -3.5800 -0.8862 22 1 3.8657 -2.9318 0.6919 23 1 3.8531 -3.4453 -1.0120 24 1 3.8119 -5.2196 1.4657 25 1 5.0706 -5.1374 0.2075 26 1 1.4251 -6.8407 -0.6988 27 1 1.8639 -6.6140 1.0086 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261095705.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:16:10 Heat of formation + Delta-G solvation = -71.928776 kcal Electronic energy + Delta-G solvation = -15087.295835 eV Core-core repulsion = 12423.282992 eV Total energy + Delta-G solvation = -2664.012842 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.079 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.52349 -39.39682 -37.75574 -35.97252 -33.92717 -33.34981 -30.72721 -28.83928 -26.65535 -24.95587 -23.24054 -21.88443 -19.95699 -19.02538 -18.17621 -17.24582 -16.88482 -16.81757 -16.09273 -15.47050 -14.90096 -14.79186 -14.56591 -14.00616 -13.44130 -13.13785 -13.01830 -12.84682 -12.59653 -12.50652 -12.01165 -11.88155 -11.49270 -11.04609 -10.86397 -10.50804 -9.60939 -9.38071 -8.42249 -6.85326 0.53305 0.83996 1.40203 1.52458 1.56613 2.16341 2.56105 2.81054 2.98788 3.59076 3.72079 4.18247 4.24203 4.36868 4.42519 4.50589 4.55419 4.81651 4.99119 5.04504 5.10857 5.15765 5.50692 5.67153 5.97640 6.11756 6.34929 6.61527 6.80320 7.10121 8.00853 8.27288 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.027187 B = 0.011712 C = 0.008289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.673038 B = 2390.117958 C = 3376.989874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.018 3.982 3 Si 0.996 3.004 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.245 1.245 7 C -0.428 4.428 8 H 0.114 0.886 9 C 0.247 3.753 10 N -0.557 5.557 11 C 0.460 3.540 12 O -0.482 6.482 13 N -0.636 5.636 14 C 0.126 3.874 15 C -0.300 4.300 16 C -0.073 4.073 17 C 0.061 3.939 18 O -0.384 6.384 19 C 0.128 3.872 20 H 0.285 0.715 21 H 0.409 0.591 22 H 0.081 0.919 23 H 0.067 0.933 24 H 0.057 0.943 25 H 0.130 0.870 26 H 0.117 0.883 27 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.934 -2.324 -0.460 7.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.363 5.363 2 C -0.206 4.206 3 Si 0.815 3.185 4 H -0.184 1.184 5 H -0.195 1.195 6 H -0.168 1.168 7 C -0.462 4.462 8 H 0.131 0.869 9 C 0.119 3.881 10 N -0.289 5.289 11 C 0.153 3.847 12 O -0.286 6.286 13 N -0.372 5.372 14 C -0.011 4.011 15 C -0.308 4.308 16 C -0.112 4.112 17 C -0.015 4.015 18 O -0.302 6.302 19 C 0.051 3.949 20 H 0.096 0.904 21 H 0.267 0.733 22 H 0.100 0.900 23 H 0.085 0.915 24 H 0.075 0.925 25 H 0.148 0.852 26 H 0.135 0.865 27 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.817 -2.324 -0.001 6.264 hybrid contribution 0.047 0.934 -0.320 0.988 sum 5.864 -1.390 -0.320 6.035 Atomic orbital electron populations 1.70206 1.09461 1.30060 1.26608 1.27283 0.95749 1.05370 0.92216 0.84988 0.79154 0.74584 0.79778 1.18404 1.19524 1.16783 1.20248 0.95716 0.89141 1.41048 0.86853 1.19067 0.86908 0.93594 0.88563 1.68933 1.10036 1.26932 1.23032 1.20648 0.85549 0.85278 0.93258 1.84533 1.13542 1.95829 1.34653 1.67459 1.10656 1.29728 1.29392 1.21607 0.88831 0.96817 0.93824 1.21032 0.98528 0.94009 1.17281 1.20595 0.89737 0.98811 1.02023 1.22859 0.97694 0.85966 0.95011 1.87993 1.20879 1.58802 1.62491 1.21080 0.81132 0.90518 1.02205 0.90408 0.73255 0.90036 0.91451 0.92457 0.85229 0.86547 0.90127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -39.15 11.52 21.85 0.25 -38.89 15 2 C 0.02 0.88 5.50 85.32 0.47 1.35 15 3 Si 1.00 35.14 29.56 68.60 2.03 37.17 15 4 H -0.26 -8.82 7.11 99.48 0.71 -8.12 15 5 H -0.27 -9.31 7.11 99.48 0.71 -8.61 15 6 H -0.24 -8.02 7.11 99.48 0.71 -7.32 15 7 C -0.43 -21.67 8.71 23.54 0.20 -21.47 15 8 H 0.11 5.07 6.37 -2.91 -0.02 5.06 15 9 C 0.25 13.49 6.58 40.28 0.27 13.75 15 10 N -0.56 -32.32 8.09 -307.15 -2.48 -34.80 15 11 C 0.46 24.90 8.70 180.63 1.57 26.47 15 12 O -0.48 -22.90 13.64 -87.49 -1.19 -24.10 15 13 N -0.64 -32.36 10.36 -302.10 -3.13 -35.49 15 14 C 0.13 5.87 6.71 42.27 0.28 6.16 15 15 C -0.30 -14.37 5.84 -19.39 -0.11 -14.48 15 16 C -0.07 -2.71 5.17 29.78 0.15 -2.56 15 17 C 0.06 1.80 6.85 72.00 0.49 2.29 15 18 O -0.38 -12.98 10.80 -148.98 -1.61 -14.58 15 19 C 0.13 4.59 6.93 71.18 0.49 5.09 15 20 H 0.29 13.52 8.29 -92.71 -0.77 12.75 15 21 H 0.41 14.90 9.06 -74.06 -0.67 14.23 15 22 H 0.08 2.87 7.09 -2.39 -0.02 2.86 15 23 H 0.07 2.45 8.14 -2.39 -0.02 2.43 15 24 H 0.06 1.61 8.08 -2.39 -0.02 1.59 15 25 H 0.13 2.84 8.14 -2.39 -0.02 2.82 15 26 H 0.12 3.85 8.14 -2.39 -0.02 3.83 15 27 H 0.08 2.59 8.14 -2.39 -0.02 2.57 15 Total: -1.00 -68.24 237.74 -1.77 -70.01 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: 0.55 Total: 24.09 kcal Atomic # 6 Polarization: 12.78 SS G_CDS: 3.82 Total: 16.60 kcal Atomic # 7 Polarization: -103.82 SS G_CDS: -5.36 Total: -109.18 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -2.80 Total: -38.68 kcal Atomic # 14 Polarization: 35.14 SS G_CDS: 2.03 Total: 37.17 kcal Total: -68.24 -1.77 -70.01 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261095705.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.923 kcal (2) G-P(sol) polarization free energy of solvation -68.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds