Wall clock time and date at job start Thu Apr 9 2020 14:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46700 * 180.02562 * 9 7 2 11 11 H 1.08994 * 109.39226 * 55.19819 * 10 9 7 12 12 C 1.53095 * 109.39187 * 295.49309 * 10 9 7 13 13 S 1.81746 * 108.84506 * 176.83143 * 12 10 9 14 14 C 1.81751 * 102.22224 * 53.26018 * 13 12 10 15 15 C 1.53091 * 108.84279 * 306.74136 * 14 13 12 16 16 C 1.52582 * 109.95760 * 63.02179 * 15 14 13 17 17 F 1.39902 * 109.22672 * 169.00435 * 16 15 14 18 18 F 1.39899 * 109.19292 * 49.62447 * 16 15 14 19 19 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 21 21 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 22 22 H 1.09006 * 109.57502 * 296.63470 * 12 10 9 23 23 H 1.08996 * 109.57617 * 57.01697 * 12 10 9 24 24 H 1.08994 * 109.57891 * 186.92709 * 14 13 12 25 25 H 1.09007 * 109.57125 * 66.54826 * 14 13 12 26 26 H 1.09007 * 109.38790 * 302.87446 * 15 14 13 27 27 H 1.09000 * 109.30867 * 183.12126 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 1 3.5893 -3.1731 -0.8435 12 6 3.6045 -3.3232 1.3042 13 16 4.1352 -5.0605 1.2482 14 6 5.9040 -4.9101 0.8582 15 6 6.0622 -4.0448 -0.3948 16 6 5.5423 -2.6361 -0.1238 17 9 5.9178 -1.7959 -1.1775 18 9 6.1022 -2.1603 1.0667 19 1 -0.4850 0.8400 -0.0004 20 1 3.8753 -0.6803 -0.8889 21 1 3.8746 -0.6799 0.8911 22 1 4.0793 -2.8234 2.1486 23 1 2.5209 -3.2756 1.4115 24 1 6.3229 -5.8994 0.6741 25 1 6.4236 -4.4413 1.6939 26 1 5.4965 -4.4880 -1.2144 27 1 7.1163 -3.9952 -0.6678 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261210270.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:16:17 Heat of formation + Delta-G solvation = -135.285074 kcal Electronic energy + Delta-G solvation = -13931.839080 eV Core-core repulsion = 11257.142587 eV Total energy + Delta-G solvation = -2674.696493 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.058 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -50.09134 -48.02308 -37.64490 -35.09355 -33.63703 -29.68054 -27.77867 -25.42974 -22.97791 -21.44660 -19.23986 -18.50126 -18.07670 -17.38728 -16.94233 -16.29668 -15.82982 -14.93999 -14.76788 -14.67813 -14.36666 -14.27733 -14.09558 -13.87385 -13.46234 -13.07168 -12.93370 -12.70745 -12.55042 -12.17943 -11.79272 -11.53140 -11.07687 -10.84587 -10.70765 -8.76415 -8.33028 -6.37086 0.71185 1.31781 1.33768 1.44443 1.47668 2.31458 2.70225 3.01589 3.12536 3.22427 3.32685 3.69812 4.06542 4.19641 4.30684 4.43944 4.56927 4.64274 4.70593 4.86454 4.93159 5.09395 5.29345 5.54138 6.19668 6.68667 7.27279 8.82559 Molecular weight = 222.06amu Principal moments of inertia in cm(-1) A = 0.037215 B = 0.010490 C = 0.008877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.202120 B = 2668.450663 C = 3153.309731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.014 3.986 3 Si 0.937 3.063 4 H -0.267 1.267 5 H -0.255 1.255 6 H -0.281 1.281 7 C -0.523 4.523 8 H 0.048 0.952 9 C -0.005 4.005 10 C -0.111 4.111 11 H 0.102 0.898 12 C -0.056 4.056 13 S -0.285 6.285 14 C -0.072 4.072 15 C -0.152 4.152 16 C 0.279 3.721 17 F -0.206 7.206 18 F -0.208 7.208 19 H 0.267 0.733 20 H 0.024 0.976 21 H 0.019 0.981 22 H 0.085 0.915 23 H 0.103 0.897 24 H 0.149 0.851 25 H 0.096 0.904 26 H 0.115 0.885 27 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.382 -8.277 0.510 16.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.184 4.184 3 Si 0.761 3.239 4 H -0.192 1.192 5 H -0.179 1.179 6 H -0.206 1.206 7 C -0.561 4.561 8 H 0.066 0.934 9 C -0.044 4.044 10 C -0.132 4.132 11 H 0.120 0.880 12 C -0.204 4.204 13 S -0.057 6.057 14 C -0.220 4.220 15 C -0.191 4.191 16 C 0.243 3.757 17 F -0.187 7.187 18 F -0.189 7.189 19 H 0.076 0.924 20 H 0.042 0.958 21 H 0.037 0.963 22 H 0.103 0.897 23 H 0.122 0.878 24 H 0.167 0.833 25 H 0.115 0.885 26 H 0.134 0.866 27 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 13.654 -9.097 0.711 16.422 hybrid contribution 0.389 2.287 -0.157 2.326 sum 14.043 -6.809 0.554 15.616 Atomic orbital electron populations 1.70028 1.07930 1.28146 1.52166 1.25821 0.95474 1.02882 0.94185 0.85859 0.79427 0.79404 0.79242 1.19180 1.17939 1.20610 1.21227 0.90643 0.93569 1.50621 0.93421 1.19532 0.95510 0.92330 0.97036 1.22157 0.91288 0.99810 0.99913 0.87968 1.23310 1.05513 0.92632 0.98914 1.86858 1.12617 1.12300 1.93915 1.23505 0.93183 1.05732 0.99533 1.22728 1.05892 0.89869 1.00658 1.21467 0.93119 0.89225 0.71861 1.92967 1.92702 1.74811 1.58223 1.92936 1.87075 1.90462 1.48435 0.92363 0.95821 0.96312 0.89666 0.87845 0.83315 0.88525 0.86614 0.85778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.12 13.96 21.45 0.30 -57.82 15 2 C 0.01 0.83 5.47 84.65 0.46 1.29 15 3 Si 0.94 44.55 27.47 68.60 1.88 46.43 15 4 H -0.27 -12.26 7.11 99.48 0.71 -11.56 15 5 H -0.26 -11.65 6.54 99.48 0.65 -11.00 15 6 H -0.28 -13.01 7.11 99.48 0.71 -12.30 15 7 C -0.52 -29.17 8.91 25.60 0.23 -28.94 15 8 H 0.05 2.87 7.28 -2.91 -0.02 2.85 15 9 C -0.01 -0.24 3.30 29.85 0.10 -0.14 15 10 C -0.11 -4.17 1.71 -10.90 -0.02 -4.19 15 11 H 0.10 3.86 8.05 -2.39 -0.02 3.84 15 12 C -0.06 -2.00 5.42 72.01 0.39 -1.61 15 13 S -0.28 -8.16 22.33 -56.49 -1.26 -9.42 15 14 C -0.07 -1.44 6.29 72.01 0.45 -0.99 15 15 C -0.15 -3.27 5.32 30.49 0.16 -3.11 15 16 C 0.28 8.82 1.61 30.32 0.05 8.87 15 17 F -0.21 -7.14 15.96 44.97 0.72 -6.42 15 18 F -0.21 -6.92 15.04 44.97 0.68 -6.24 15 19 H 0.27 15.43 8.31 -92.71 -0.77 14.66 15 20 H 0.02 1.12 6.79 -2.39 -0.02 1.10 15 21 H 0.02 0.89 7.20 -2.39 -0.02 0.87 15 22 H 0.08 3.03 7.49 -2.38 -0.02 3.01 15 23 H 0.10 4.27 6.84 -2.39 -0.02 4.26 15 24 H 0.15 2.01 8.14 -2.39 -0.02 1.99 15 25 H 0.10 1.93 7.49 -2.38 -0.02 1.91 15 26 H 0.12 2.32 8.06 -2.38 -0.02 2.30 15 27 H 0.12 2.00 8.14 -2.39 -0.02 1.98 15 Total: -1.00 -63.63 237.33 5.25 -58.37 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: 1.11 Total: 3.91 kcal Atomic # 6 Polarization: -30.64 SS G_CDS: 1.83 Total: -28.81 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: 0.30 Total: -57.82 kcal Atomic # 9 Polarization: -14.06 SS G_CDS: 1.39 Total: -12.66 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.88 Total: 46.43 kcal Atomic # 16 Polarization: -8.16 SS G_CDS: -1.26 Total: -9.42 kcal Total: -63.63 5.25 -58.37 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261210270.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.910 kcal (2) G-P(sol) polarization free energy of solvation -63.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds