Wall clock time and date at job start Thu Apr 9 2020 14:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47478 * 2 1 4 4 H 1.08999 * 109.46924 * 305.00030 * 3 2 1 5 5 O 1.42902 * 109.46823 * 65.00059 * 3 2 1 6 6 C 1.50694 * 109.47055 * 185.00196 * 3 2 1 7 7 C 1.38122 * 120.03626 * 264.99797 * 6 3 2 8 8 C 1.38283 * 120.07290 * 179.97438 * 7 6 3 9 9 C 1.38319 * 120.13593 * 0.02562 * 8 7 6 10 10 C 1.38082 * 120.06954 * 359.97438 * 9 8 7 11 11 C 1.38854 * 120.03794 * 84.72262 * 6 3 2 12 12 O 1.35756 * 120.06813 * 0.02562 * 11 6 3 13 13 C 1.34824 * 116.99912 * 174.12625 * 12 11 6 14 14 H 1.07995 * 120.00681 * 5.06018 * 13 12 11 15 15 C 1.38660 * 119.99650 * 185.06034 * 13 12 11 16 16 N 1.31556 * 119.99905 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99866 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47192 * 60.00055 * 17 15 13 19 19 H 1.48507 * 109.46834 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47170 * 299.99713 * 17 15 13 21 21 H 1.09008 * 109.47175 * 300.00249 * 1 2 3 22 22 H 1.09001 * 109.47051 * 59.99717 * 1 2 3 23 23 H 1.08995 * 109.47391 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46765 * 239.99558 * 2 1 3 25 25 H 1.09001 * 109.47051 * 120.00283 * 2 1 3 26 26 H 0.96703 * 113.99846 * 60.00389 * 5 3 2 27 27 H 1.08008 * 119.96604 * 359.97438 * 7 6 3 28 28 H 1.08004 * 119.93052 * 179.97438 * 8 7 6 29 29 H 1.08003 * 119.96345 * 179.97438 * 9 8 7 30 30 H 1.08001 * 120.03121 * 180.02562 * 10 9 8 31 31 H 0.97004 * 119.99771 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 8 1.6620 2.0813 1.2211 6 6 3.5419 1.4441 -0.1239 7 6 4.3290 1.5145 1.0090 8 6 5.7072 1.5156 0.8962 9 6 6.3020 1.4468 -0.3507 10 6 5.5207 1.3762 -1.4870 11 6 4.1361 1.3692 -1.3766 12 8 3.3653 1.2948 -2.4917 13 6 4.0007 1.3474 -3.6796 14 1 5.0800 1.3620 -3.7146 15 6 3.2684 1.3826 -4.8565 16 7 1.9537 1.3642 -4.8140 17 14 4.1488 1.4546 -6.5025 18 1 5.0139 0.2573 -6.6540 19 1 3.1472 1.4842 -7.5986 20 1 4.9848 2.6804 -6.5635 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 2.0143 1.6541 2.0139 27 1 3.8675 1.5688 1.9840 28 1 6.3204 1.5711 1.7835 29 1 7.3787 1.4482 -0.4355 30 1 5.9857 1.3221 -2.4602 31 1 1.4414 1.3892 -5.6373 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035625926.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:54 Heat of formation + Delta-G solvation = -86.457363 kcal Electronic energy + Delta-G solvation = -15156.349193 eV Core-core repulsion = 12595.246687 eV Total energy + Delta-G solvation = -2561.102506 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.104 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.06610 -38.87112 -37.58467 -34.32656 -33.71436 -31.84075 -30.56458 -27.38709 -26.78999 -23.37920 -22.98713 -21.94658 -19.81766 -18.99590 -17.49711 -16.89682 -16.41240 -16.13989 -15.73259 -15.54439 -15.25670 -14.89779 -14.36743 -13.92343 -13.56403 -13.45290 -13.09441 -12.87864 -12.59378 -12.47403 -12.36816 -12.15242 -11.86167 -11.81587 -11.41687 -10.80053 -10.79187 -9.62744 -8.94810 -8.46185 -6.13695 0.54208 0.75373 1.33734 1.44110 1.49190 2.16867 2.82896 3.14248 3.49309 3.54630 3.77910 4.12186 4.14475 4.21034 4.30506 4.50578 4.60993 4.70041 4.82548 4.90278 5.02211 5.08754 5.14751 5.27254 5.33965 5.36842 5.66509 5.73428 5.76567 6.01816 6.24927 6.87019 6.98653 7.78311 8.75805 Molecular weight = 222.10amu Principal moments of inertia in cm(-1) A = 0.024636 B = 0.010219 C = 0.007572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.268899 B = 2739.302615 C = 3697.025055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.136 4.136 3 C 0.173 3.827 4 H 0.062 0.938 5 O -0.561 6.561 6 C -0.202 4.202 7 C -0.069 4.069 8 C -0.190 4.190 9 C -0.077 4.077 10 C -0.250 4.250 11 C 0.117 3.883 12 O -0.220 6.220 13 C -0.416 4.416 14 H 0.098 0.902 15 C -0.018 4.018 16 N -0.915 5.915 17 Si 1.013 2.987 18 H -0.258 1.258 19 H -0.272 1.272 20 H -0.260 1.260 21 H 0.072 0.928 22 H 0.031 0.969 23 H 0.067 0.933 24 H 0.040 0.960 25 H 0.086 0.914 26 H 0.385 0.615 27 H 0.154 0.846 28 H 0.152 0.848 29 H 0.142 0.858 30 H 0.116 0.884 31 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.357 -1.916 9.892 10.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.173 4.173 3 C 0.114 3.886 4 H 0.080 0.920 5 O -0.369 6.369 6 C -0.203 4.203 7 C -0.087 4.087 8 C -0.209 4.209 9 C -0.095 4.095 10 C -0.269 4.269 11 C 0.066 3.934 12 O -0.126 6.126 13 C -0.492 4.492 14 H 0.115 0.885 15 C -0.216 4.216 16 N -0.552 5.552 17 Si 0.833 3.167 18 H -0.182 1.182 19 H -0.196 1.196 20 H -0.184 1.184 21 H 0.091 0.909 22 H 0.050 0.950 23 H 0.086 0.914 24 H 0.059 0.941 25 H 0.105 0.895 26 H 0.235 0.765 27 H 0.172 0.828 28 H 0.170 0.830 29 H 0.160 0.840 30 H 0.134 0.866 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.623 -1.544 9.316 10.115 hybrid contribution 0.544 -0.297 -0.978 1.158 sum 4.167 -1.841 8.338 9.501 Atomic orbital electron populations 1.21654 0.94403 1.01990 1.01672 1.22020 0.97370 0.95849 1.02092 1.20158 0.88950 0.93187 0.86314 0.91951 1.86562 1.76808 1.57739 1.15799 1.19980 0.97103 1.11891 0.91354 1.20911 0.93852 0.96859 0.97042 1.21167 0.94580 1.07377 0.97744 1.21201 1.00099 0.96372 0.91818 1.21323 0.93113 1.12172 1.00327 1.19705 0.91132 0.94543 0.87977 1.83938 1.35209 1.81130 1.12337 1.21736 0.92805 1.53333 0.81338 0.88475 1.26478 0.96438 0.95913 1.02800 1.70171 1.06713 1.48529 1.29835 0.84725 0.77588 0.79795 0.74613 1.18215 1.19632 1.18444 0.90931 0.94962 0.91408 0.94065 0.89500 0.76473 0.82817 0.83010 0.83978 0.86572 0.91929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.48 9.81 71.98 0.71 -3.77 16 2 C -0.14 -4.84 5.59 30.59 0.17 -4.67 16 3 C 0.17 6.91 2.93 29.85 0.09 6.99 16 4 H 0.06 3.11 7.70 -2.39 -0.02 3.09 16 5 O -0.56 -18.36 12.53 -148.98 -1.87 -20.22 16 6 C -0.20 -8.35 5.08 -19.75 -0.10 -8.45 16 7 C -0.07 -2.20 9.30 22.25 0.21 -1.99 16 8 C -0.19 -5.67 10.04 22.30 0.22 -5.44 16 9 C -0.08 -2.62 10.04 22.25 0.22 -2.39 16 10 C -0.25 -10.96 9.17 22.39 0.21 -10.75 16 11 C 0.12 5.79 6.62 22.58 0.15 5.94 16 12 O -0.22 -13.00 8.90 -22.74 -0.20 -13.20 16 13 C -0.42 -24.18 9.49 67.92 0.64 -23.53 16 14 H 0.10 5.23 5.20 -2.91 -0.02 5.21 16 15 C -0.02 -1.03 5.49 84.83 0.47 -0.56 16 16 N -0.91 -55.80 13.67 21.61 0.30 -55.51 16 17 Si 1.01 43.04 29.55 68.60 2.03 45.07 16 18 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 19 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 20 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 21 H 0.07 2.04 7.82 -2.38 -0.02 2.02 16 22 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 23 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.04 1.76 8.14 -2.39 -0.02 1.75 16 25 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 26 H 0.39 8.57 7.33 -74.05 -0.54 8.03 16 27 H 0.15 3.52 6.41 -2.91 -0.02 3.50 16 28 H 0.15 3.25 8.06 -2.91 -0.02 3.22 16 29 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 30 H 0.12 5.20 5.64 -2.91 -0.02 5.19 16 31 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -70.29 266.64 3.83 -66.45 By element: Atomic # 1 Polarization: 25.45 SS G_CDS: 0.60 Total: 26.04 kcal Atomic # 6 Polarization: -51.62 SS G_CDS: 2.98 Total: -48.64 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: 0.30 Total: -55.51 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -2.07 Total: -33.42 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -70.29 3.83 -66.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035625926.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.006 kcal (2) G-P(sol) polarization free energy of solvation -70.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds