Wall clock time and date at job start Thu Apr 9 2020 14:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31447 * 1 3 3 Si 1.86800 * 120.00067 * 2 1 4 4 H 1.48501 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47216 * 299.99803 * 3 2 1 6 6 H 1.48500 * 109.47389 * 59.99950 * 3 2 1 7 7 C 1.38767 * 119.99943 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00150 * 179.97438 * 7 2 1 9 9 O 1.34884 * 119.99858 * 0.02562 * 7 2 1 10 10 C 1.34809 * 116.99930 * 179.97438 * 9 7 2 11 11 O 1.21579 * 120.00131 * 0.02562 * 10 9 7 12 12 C 1.47133 * 120.00090 * 180.02562 * 10 9 7 13 13 C 1.36425 * 126.23951 * 179.71469 * 12 10 9 14 14 N 1.35732 * 106.90237 * 179.97438 * 13 12 10 15 15 C 1.35711 * 107.71031 * 0.20652 * 14 13 12 16 16 N 1.30594 * 108.93463 * 359.97438 * 15 14 13 17 17 C 1.51601 * 109.81498 * 179.97438 * 15 14 13 18 18 C 1.54507 * 104.28375 * 16.62743 * 17 15 14 19 19 C 1.47076 * 141.29209 * 179.74782 * 14 13 12 20 20 H 0.97005 * 119.99897 * 0.02562 * 1 2 3 21 21 H 1.07995 * 126.54991 * 0.06373 * 13 12 10 22 22 H 1.08993 * 110.47351 * 135.33201 * 17 15 14 23 23 H 1.09004 * 110.47211 * 257.80136 * 17 15 14 24 24 H 1.09005 * 110.94224 * 92.78078 * 18 17 15 25 25 H 1.08997 * 110.94807 * 216.48365 * 18 17 15 26 26 H 1.08995 * 110.22990 * 44.23583 * 19 14 13 27 27 H 1.09004 * 110.22214 * 282.28896 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 3.7085 1.3463 0.0006 5 1 1.8898 2.3964 -1.2125 6 1 1.8898 2.3965 1.2125 7 6 2.0083 -1.2018 0.0005 8 1 3.0883 -1.2018 0.0001 9 8 1.3338 -2.3699 0.0005 10 6 2.0680 -3.5005 0.0005 11 8 3.2822 -3.4369 0.0010 12 6 1.4001 -4.8115 0.0000 13 6 2.0143 -6.0296 -0.0056 14 7 1.0324 -6.9667 -0.0034 15 6 -0.1588 -6.3165 -0.0012 16 7 0.0611 -5.0292 -0.0015 17 6 -1.2932 -7.3222 0.0007 18 6 -0.6260 -8.6487 0.4279 19 6 0.8371 -8.4244 -0.0099 20 1 -0.4850 0.8401 -0.0004 21 1 3.0785 -6.2132 -0.0094 22 1 -2.0590 -7.0318 0.7199 23 1 -1.7234 -7.4135 -0.9967 24 1 -0.6926 -8.7885 1.5068 25 1 -1.0657 -9.4941 -0.1011 26 1 1.5187 -8.8992 0.6959 27 1 0.9954 -8.8213 -1.0127 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118134126.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:07 Heat of formation + Delta-G solvation = -5.235756 kcal Electronic energy + Delta-G solvation = -14437.759836 eV Core-core repulsion = 11776.639020 eV Total energy + Delta-G solvation = -2661.120816 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.15814 -38.58063 -36.20631 -34.87811 -32.05730 -31.78588 -28.78866 -27.14812 -25.48536 -23.19825 -21.53008 -19.84419 -19.40185 -17.53471 -17.04116 -16.35509 -15.85793 -14.62025 -14.47626 -14.29540 -13.82300 -13.62420 -13.37992 -12.87000 -12.69697 -12.16188 -11.81024 -11.48240 -11.31378 -11.08446 -10.32514 -10.32115 -9.69502 -9.62140 -9.39090 -9.04148 -8.45772 -8.07880 -6.28085 -3.93103 2.03657 2.75036 2.87617 3.25848 3.26920 3.35273 3.83637 4.07181 4.30873 4.33251 4.48935 4.56629 4.88647 5.02495 5.19849 5.23977 5.30728 5.41167 5.65060 5.72783 5.82295 6.39693 6.59708 7.06102 7.29603 7.52422 8.06442 8.32536 8.84486 9.18807 10.04537 10.89488 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.064924 B = 0.006271 C = 0.005757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.172196 B = 4464.085661 C = 4862.293135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.041 3.959 3 Si 0.944 3.056 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.379 4.379 8 H 0.097 0.903 9 O -0.190 6.190 10 C 0.479 3.521 11 O -0.560 6.560 12 C 0.002 3.998 13 C 0.032 3.968 14 N -0.486 5.486 15 C 0.170 3.830 16 N -0.426 5.426 17 C -0.037 4.037 18 C -0.129 4.129 19 C 0.105 3.895 20 H 0.268 0.732 21 H 0.184 0.816 22 H 0.098 0.902 23 H 0.095 0.905 24 H 0.087 0.913 25 H 0.100 0.900 26 H 0.089 0.911 27 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.014 -17.621 0.179 17.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.164 4.164 3 Si 0.768 3.232 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.456 4.456 8 H 0.115 0.885 9 O -0.095 6.095 10 C 0.326 3.674 11 O -0.458 6.458 12 C -0.126 4.126 13 C -0.103 4.103 14 N -0.171 5.171 15 C -0.093 4.093 16 N -0.145 5.145 17 C -0.076 4.076 18 C -0.167 4.167 19 C -0.017 4.017 20 H 0.078 0.922 21 H 0.201 0.799 22 H 0.116 0.884 23 H 0.114 0.886 24 H 0.105 0.895 25 H 0.119 0.881 26 H 0.108 0.892 27 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.313 -16.924 0.180 17.082 hybrid contribution 1.121 0.186 -0.023 1.137 sum -1.192 -16.738 0.156 16.781 Atomic orbital electron populations 1.70062 1.06010 1.27419 1.45660 1.25384 0.95804 0.98859 0.96356 0.85607 0.79461 0.80067 0.78041 1.18904 1.20199 1.20201 1.21373 0.92479 0.80026 1.51697 0.88533 1.84039 1.38481 1.12770 1.74194 1.19285 0.84773 0.83978 0.79378 1.90643 1.14505 1.87622 1.53073 1.19805 0.88734 0.91883 1.12179 1.22029 0.94403 0.86385 1.07526 1.46271 1.08125 1.07673 1.55065 1.24555 0.88237 0.89204 1.07311 1.70481 1.15554 1.12128 1.16365 1.20598 0.93906 0.89069 1.04059 1.22717 0.92866 0.98034 1.03096 1.22356 0.98738 0.77303 1.03260 0.92172 0.79889 0.88361 0.88637 0.89451 0.88149 0.89230 0.89309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.69 13.67 55.48 0.76 -25.93 15 2 C 0.04 1.22 5.49 -17.52 -0.10 1.12 15 3 Si 0.94 22.27 29.55 -169.99 -5.02 17.25 15 4 H -0.26 -6.12 7.11 56.52 0.40 -5.72 15 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 15 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 15 7 C -0.38 -12.04 9.65 30.93 0.30 -11.74 15 8 H 0.10 3.03 6.86 -52.49 -0.36 2.67 15 9 O -0.19 -6.12 9.75 -21.94 -0.21 -6.33 15 10 C 0.48 13.68 7.89 34.34 0.27 13.95 15 11 O -0.56 -16.36 16.13 -19.33 -0.31 -16.67 15 12 C 0.00 0.05 7.01 -83.22 -0.58 -0.53 15 13 C 0.03 0.59 11.75 -16.48 -0.19 0.39 15 14 N -0.49 -7.25 3.55 -111.97 -0.40 -7.65 15 15 C 0.17 2.90 8.58 -154.28 -1.32 1.58 15 16 N -0.43 -9.87 11.34 -6.97 -0.08 -9.95 15 17 C -0.04 -0.38 6.85 -26.65 -0.18 -0.56 15 18 C -0.13 -0.83 7.16 -25.23 -0.18 -1.01 15 19 C 0.10 0.88 7.77 -3.02 -0.02 0.86 15 20 H 0.27 7.58 8.31 -40.82 -0.34 7.24 15 21 H 0.18 2.92 8.06 -52.49 -0.42 2.49 15 22 H 0.10 0.93 8.14 -51.93 -0.42 0.51 15 23 H 0.10 0.83 8.14 -51.93 -0.42 0.41 15 24 H 0.09 0.51 8.14 -51.93 -0.42 0.08 15 25 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 15 26 H 0.09 0.59 8.14 -51.93 -0.42 0.17 15 27 H 0.09 0.60 8.14 -51.93 -0.42 0.17 15 LS Contribution 249.54 15.07 3.76 3.76 Total: -1.00 -39.29 249.54 -5.97 -45.26 By element: Atomic # 1 Polarization: -1.34 SS G_CDS: -2.45 Total: -3.80 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -2.01 Total: 4.07 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: 0.28 Total: -43.54 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.53 Total: -23.00 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -39.29 -5.97 -45.26 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118134126.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.025 kcal (2) G-P(sol) polarization free energy of solvation -39.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds