Wall clock time and date at job start Thu Apr 9 2020 14:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31447 * 1 3 3 Si 1.86800 * 120.00067 * 2 1 4 4 H 1.48501 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47216 * 299.99803 * 3 2 1 6 6 H 1.48500 * 109.47389 * 59.99950 * 3 2 1 7 7 C 1.38767 * 119.99943 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00150 * 179.97438 * 7 2 1 9 9 O 1.34884 * 119.99858 * 0.02562 * 7 2 1 10 10 C 1.34809 * 116.99930 * 179.97438 * 9 7 2 11 11 O 1.21579 * 120.00131 * 0.02562 * 10 9 7 12 12 C 1.47133 * 120.00090 * 180.02562 * 10 9 7 13 13 C 1.36425 * 126.23951 * 179.71469 * 12 10 9 14 14 N 1.35732 * 106.90237 * 179.97438 * 13 12 10 15 15 C 1.35711 * 107.71031 * 0.20652 * 14 13 12 16 16 N 1.30594 * 108.93463 * 359.97438 * 15 14 13 17 17 C 1.51601 * 109.81498 * 179.97438 * 15 14 13 18 18 C 1.54507 * 104.28375 * 16.62743 * 17 15 14 19 19 C 1.47076 * 141.29209 * 179.74782 * 14 13 12 20 20 H 0.97005 * 119.99897 * 0.02562 * 1 2 3 21 21 H 1.07995 * 126.54991 * 0.06373 * 13 12 10 22 22 H 1.08993 * 110.47351 * 135.33201 * 17 15 14 23 23 H 1.09004 * 110.47211 * 257.80136 * 17 15 14 24 24 H 1.09005 * 110.94224 * 92.78078 * 18 17 15 25 25 H 1.08997 * 110.94807 * 216.48365 * 18 17 15 26 26 H 1.08995 * 110.22990 * 44.23583 * 19 14 13 27 27 H 1.09004 * 110.22214 * 282.28896 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 3.7085 1.3463 0.0006 5 1 1.8898 2.3964 -1.2125 6 1 1.8898 2.3965 1.2125 7 6 2.0083 -1.2018 0.0005 8 1 3.0883 -1.2018 0.0001 9 8 1.3338 -2.3699 0.0005 10 6 2.0680 -3.5005 0.0005 11 8 3.2822 -3.4369 0.0010 12 6 1.4001 -4.8115 0.0000 13 6 2.0143 -6.0296 -0.0056 14 7 1.0324 -6.9667 -0.0034 15 6 -0.1588 -6.3165 -0.0012 16 7 0.0611 -5.0292 -0.0015 17 6 -1.2932 -7.3222 0.0007 18 6 -0.6260 -8.6487 0.4279 19 6 0.8371 -8.4244 -0.0099 20 1 -0.4850 0.8401 -0.0004 21 1 3.0785 -6.2132 -0.0094 22 1 -2.0590 -7.0318 0.7199 23 1 -1.7234 -7.4135 -0.9967 24 1 -0.6926 -8.7885 1.5068 25 1 -1.0657 -9.4941 -0.1011 26 1 1.5187 -8.8992 0.6959 27 1 0.9954 -8.8213 -1.0127 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118134126.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:07 Heat of formation + Delta-G solvation = -34.192561 kcal Electronic energy + Delta-G solvation = -14439.015498 eV Core-core repulsion = 11776.639020 eV Total energy + Delta-G solvation = -2662.376477 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.50333 -40.79017 -37.48516 -36.93721 -34.32315 -33.05009 -30.19641 -28.16545 -27.63978 -24.88003 -22.45229 -21.44787 -20.97739 -19.84657 -18.62131 -17.69554 -17.21126 -16.59294 -16.46315 -16.21966 -15.10047 -14.92869 -14.54646 -14.15937 -13.93890 -13.65187 -13.33574 -13.15881 -12.45265 -12.42161 -12.18075 -11.99685 -11.88955 -11.36267 -11.06638 -10.73767 -10.71067 -9.57326 -8.54664 -6.34858 0.42640 1.27410 1.31938 1.46561 1.52392 1.62791 2.15420 2.37319 2.72265 2.96329 3.01402 3.50712 3.74748 3.99395 4.16746 4.33833 4.47189 4.60042 4.68873 4.89495 4.95305 5.09436 5.12471 5.18560 5.56807 5.79628 5.95835 6.52793 6.86698 6.94496 7.78167 8.67140 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.064924 B = 0.006271 C = 0.005757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.172196 B = 4464.085661 C = 4862.293135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.009 4.009 3 Si 1.028 2.972 4 H -0.260 1.260 5 H -0.257 1.257 6 H -0.257 1.257 7 C -0.427 4.427 8 H 0.087 0.913 9 O -0.230 6.230 10 C 0.477 3.523 11 O -0.580 6.580 12 C -0.065 4.065 13 C 0.067 3.933 14 N -0.475 5.475 15 C 0.177 3.823 16 N -0.497 5.497 17 C -0.041 4.041 18 C -0.110 4.110 19 C 0.090 3.910 20 H 0.280 0.720 21 H 0.209 0.791 22 H 0.105 0.895 23 H 0.116 0.884 24 H 0.097 0.903 25 H 0.145 0.855 26 H 0.116 0.884 27 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.193 -20.156 0.148 20.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.209 4.209 3 Si 0.846 3.154 4 H -0.184 1.184 5 H -0.181 1.181 6 H -0.181 1.181 7 C -0.503 4.503 8 H 0.104 0.896 9 O -0.136 6.136 10 C 0.326 3.674 11 O -0.479 6.479 12 C -0.192 4.192 13 C -0.072 4.072 14 N -0.157 5.157 15 C -0.089 4.089 16 N -0.218 5.218 17 C -0.080 4.080 18 C -0.148 4.148 19 C -0.028 4.028 20 H 0.089 0.911 21 H 0.225 0.775 22 H 0.123 0.877 23 H 0.134 0.866 24 H 0.116 0.884 25 H 0.163 0.837 26 H 0.134 0.866 27 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.513 -19.528 0.150 19.690 hybrid contribution 1.119 0.674 -0.020 1.306 sum -1.394 -18.854 0.131 18.906 Atomic orbital electron populations 1.70168 1.08046 1.29426 1.46211 1.26797 0.96972 1.02736 0.94404 0.84448 0.77749 0.73827 0.79412 1.18421 1.18104 1.18116 1.21687 0.92454 0.81151 1.54960 0.89575 1.84063 1.39776 1.13933 1.75863 1.20224 0.84990 0.84994 0.77214 1.90569 1.15278 1.88272 1.53782 1.19493 0.90182 0.91164 1.18319 1.22204 0.95817 0.85485 1.03735 1.46767 1.06377 1.10171 1.52418 1.25749 0.91252 0.88178 1.03674 1.70273 1.15627 1.16290 1.19561 1.21045 0.92222 0.88935 1.05751 1.22843 0.90663 0.96878 1.04385 1.23053 1.00897 0.72888 1.05921 0.91084 0.77456 0.87685 0.86615 0.88446 0.83678 0.86611 0.86587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -58.44 13.67 21.63 0.30 -58.15 15 2 C -0.01 -0.56 5.49 84.88 0.47 -0.10 15 3 Si 1.03 46.54 29.55 68.60 2.03 48.57 15 4 H -0.26 -11.45 7.11 99.48 0.71 -10.74 15 5 H -0.26 -10.75 7.11 99.48 0.71 -10.04 15 6 H -0.26 -10.75 7.11 99.48 0.71 -10.05 15 7 C -0.43 -28.77 9.65 67.95 0.66 -28.11 15 8 H 0.09 5.76 6.86 -2.91 -0.02 5.74 15 9 O -0.23 -15.91 9.75 10.24 0.10 -15.81 15 10 C 0.48 29.12 7.89 70.16 0.55 29.68 15 11 O -0.58 -35.81 16.13 19.58 0.32 -35.50 15 12 C -0.07 -3.27 7.01 40.47 0.28 -2.99 15 13 C 0.07 2.46 11.75 83.67 0.98 3.44 15 14 N -0.47 -12.98 3.55 -508.18 -1.80 -14.78 15 15 C 0.18 5.84 8.58 138.17 1.18 7.02 15 16 N -0.50 -24.01 11.34 -175.96 -2.00 -26.01 15 17 C -0.04 -0.69 6.85 30.65 0.21 -0.48 15 18 C -0.11 -0.78 7.16 31.57 0.23 -0.55 15 19 C 0.09 1.05 7.77 86.73 0.67 1.72 15 20 H 0.28 16.19 8.31 -92.70 -0.77 15.42 15 21 H 0.21 6.33 8.06 -2.91 -0.02 6.31 15 22 H 0.10 1.69 8.14 -2.39 -0.02 1.67 15 23 H 0.12 1.56 8.14 -2.39 -0.02 1.54 15 24 H 0.10 0.58 8.14 -2.38 -0.02 0.56 15 25 H 0.15 -0.11 8.14 -2.39 -0.02 -0.13 15 26 H 0.12 0.86 8.14 -2.39 -0.02 0.84 15 27 H 0.12 0.85 8.14 -2.38 -0.02 0.83 15 Total: -1.00 -95.45 249.54 5.37 -90.08 By element: Atomic # 1 Polarization: 0.77 SS G_CDS: 1.19 Total: 1.96 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: 5.24 Total: 9.64 kcal Atomic # 7 Polarization: -95.43 SS G_CDS: -3.50 Total: -98.94 kcal Atomic # 8 Polarization: -51.73 SS G_CDS: 0.42 Total: -51.31 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -95.45 5.37 -90.08 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118134126.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.889 kcal (2) G-P(sol) polarization free energy of solvation -95.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds